View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21544_high_3 (Length: 588)
Name: NF21544_high_3
Description: NF21544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21544_high_3 |
 | |
|
| [»] chr6 (5 HSPs) |
| |
|
| [»] scaffold0065 (2 HSPs) |
| | |
|
| [»] scaffold0553 (1 HSPs) |
| | |
|
| [»] scaffold0661 (2 HSPs) |
| | |
|
| [»] scaffold0019 (4 HSPs) |
| | |
|
| [»] scaffold0144 (2 HSPs) |
| | |
|
| [»] scaffold0337 (1 HSPs) |
| | |
|
| [»] scaffold0023 (2 HSPs) |
| | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
| [»] scaffold1281 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 480; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 2 - 588
Target Start/End: Complemental strand, 34402069 - 34401490
Alignment:
| Q |
2 |
aacaacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtct |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
34402069 |
aacaacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtagctgatgtct |
34401970 |
T |
|
| Q |
102 |
catcatacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaatgtaaatgaacttaatcagaacaaaata |
201 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34401969 |
catcataaagtagcgcaacaccaaataaaacactcttacaatgattgtcaaaaccaataaagacagcagaaatgtaaatgaactaaatcagaacaaaata |
34401870 |
T |
|
| Q |
202 |
caacatatatataaattacactaaataatgaaagcaatcactaatttaagtgcattccaaccctcaattagaatgcatttatgtttcatataattagtga |
301 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
34401869 |
caacatatataaaaattacactaaataatgaaagcaatcactaatttaagtgcattccaaccctcaattagaatgcatttatgtttcatatacttagtga |
34401770 |
T |
|
| Q |
302 |
ttgctagtatggaatcactaattataagaaatcacgcctcagaatgataaaacaaaaatgagaaactctcgatcatagcatatctaataagcatgtactc |
401 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34401769 |
ttactagtctggaatcactaattataagaaatcacgcctcagaataataaaacaaaaatgagaaactctcgatcatagcatatctaataagcatgtactc |
34401670 |
T |
|
| Q |
402 |
aaacactaaaattcatcacaaaaataattaaactgttgagaaaaataatttgaaattgattgagatgattcgaccagcttggatgttcattaatttgaaa |
501 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34401669 |
aaacactaaaattcatcac-aaaataattaaattgttgaaaaaaat------aaattgattgagatgattcgaccagcttggatgttcattaatttgaaa |
34401577 |
T |
|
| Q |
502 |
atcaaatggactactgaaatgtcatggctcattctcccacctagtcaaatggattcaatagatgttcttgatactctcagtatctat |
588 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| ||||| |
|
|
| T |
34401576 |
atcaaatggactactgaaatgtcatggctcattctcccacctagtcaaatggattcaacagatgtccttgatactgtcagtgtctat |
34401490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 5 - 234
Target Start/End: Original strand, 22040184 - 22040421
Alignment:
| Q |
5 |
aacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtctcat |
104 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||| |
|
|
| T |
22040184 |
aacgcactagtctggtctgtatatatagtctgtggtgtcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaactagctgctgtctcat |
22040283 |
T |
|
| Q |
105 |
catacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaat--------gtaaatgaacttaatcagaaca |
196 |
Q |
| |
|
| |||| ||||||| |||||||||||||||| || |||||||||||||||| |||||||||||| ||||| ||||||| || |||||||||| |
|
|
| T |
22040284 |
cgtacaatagcgcagcaccaaataaaacactattgcgatgattgtcaaaaccaataaaggcagctgaaataatgaccaataaatgacctaaatcagaaca |
22040383 |
T |
|
| Q |
197 |
aaatacaacatatatataaattacactaaataatgaaa |
234 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22040384 |
aaatacaacatatatataacttacactaaataatgaaa |
22040421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 28121458 - 28121221
Alignment:
| Q |
5 |
aacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtctcat |
104 |
Q |
| |
|
|||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28121458 |
aacgcactagcctggtctgtatatatagtatgaggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtagttgttgtctcat |
28121359 |
T |
|
| Q |
105 |
catacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaat--------gtaaatgaacttaatcagaaca |
196 |
Q |
| |
|
| |||| ||| ||| |||||||||||||||||||||||||||||||||||| |||||||| ||| ||||| ||||||| || ||| |||||| |
|
|
| T |
28121358 |
cgtacaatagtgcagcaccaaataaaacactcttacgatgattgtcaaaaccaataaaggaagctgaaataatgaccaataaatgacctaaataagaaca |
28121259 |
T |
|
| Q |
197 |
aaatacaacatatatataaattacactaaataatgaaa |
234 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28121258 |
aaatacaacatatatataacttacactaaataatgaaa |
28121221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 22040447 - 22040487
Alignment:
| Q |
303 |
tgctagtatggaatcactaattataagaaatcacgcctcag |
343 |
Q |
| |
|
||||||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
22040447 |
tgctagtctgtaatcacaaattataagaaatcacgcctcag |
22040487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 28121195 - 28121155
Alignment:
| Q |
303 |
tgctagtatggaatcactaattataagaaatcacgcctcag |
343 |
Q |
| |
|
||||||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
28121195 |
tgctagtctgtaatcacaaattataagaaatcacgcctcag |
28121155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 2 - 433
Target Start/End: Complemental strand, 4363 - 3919
Alignment:
| Q |
2 |
aacaacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtct |
101 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
4363 |
aacaacgcactagcctggtctgtacatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtagctgctgtct |
4264 |
T |
|
| Q |
102 |
catcatacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaatgtaaatgaacttaatcagaacaaaata |
201 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
4263 |
catcatacagtagcgcagcaccaaataaaacactcttacga-gattgtcaaaaccaataaaggcagctgaaatgtaaatgaactaaatcagaacaaaata |
4165 |
T |
|
| Q |
202 |
caacatatatataaattacactaaataatgaaagcaatcactaatttaagtgcattccaaccctcaattagaatgcatttatgtttcatataattagtga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4164 |
caacatatatataaattacactaaataatgaaagcaatcactaatttaagtgcattccaaccttcaattagaatgcatttatgtttcttataattagtga |
4065 |
T |
|
| Q |
302 |
ttgctagtatggaatcactaattataagaaatcacgcctcag--------------aatgataaaacaaaaatgagaaactctcgatcatagcatatcta |
387 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4064 |
ttgctagtctataatcactaattataataaatcacgccttagcagtgagtaaactcaatgataaaacaaaaatgagaaactctcgatcatagaatatcta |
3965 |
T |
|
| Q |
388 |
ataagcatgtactcaaacactaaaattcatcacaaaaataattaaa |
433 |
Q |
| |
|
||||| ||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
3964 |
ataagtatgtactcaaatactaaaatttatcacaaaaataattaaa |
3919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 425 - 586
Target Start/End: Complemental strand, 3531 - 3369
Alignment:
| Q |
425 |
ataattaaactgtt-gagaaaaataatttgaaattgattgagatgattcgaccagcttggatgttcattaatttgaaaatcaaatggactactgaaatgt |
523 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3531 |
ataattaaactgtttgaaaaaaataatttgaaattgattgagatgattcgaccagcttggatgttcattaatttgaaaatcaaatggactactgagatgt |
3432 |
T |
|
| Q |
524 |
catggctcattctcccacctagtcaaatggattcaatagatgttcttgatactctcagtatct |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||| ||||||||| | ||||||| |
|
|
| T |
3431 |
catggctcattctcccacctagtcaaatggattcaacatatgtccttgatactgttagtatct |
3369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0553 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0553
Description:
Target: scaffold0553; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 2 - 275
Target Start/End: Complemental strand, 4949 - 4676
Alignment:
| Q |
2 |
aacaacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtct |
101 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
4949 |
aacaacgcactagcctggtctatatatatcgtctgtggtttcttattggacatgcactttaagaatgttgtaaacaaccaatcaaaagtagctgctgtct |
4850 |
T |
|
| Q |
102 |
catcatacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaatgtaaatgaacttaatcagaacaaaata |
201 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
4849 |
catcatacagtagcgcaacaccaaataaaacactcttacgatgattgtcaaaaccaataaaggcagctgaaatgtaaatgaactaaatcagaacaaaata |
4750 |
T |
|
| Q |
202 |
caacatatatataaattacactaaataatgaaagcaatcactaatttaagtgcattccaaccctcaattagaat |
275 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4749 |
caacatatatacaaattacactaaataatgaaagcaatcactaatttaagtgcattccaaccctcaatcagaat |
4676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 12282665 - 12282416
Alignment:
| Q |
2 |
aacaacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtct |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
12282665 |
aacaacgcactagcctggtctgtatatatcgtctgtggtttcttattgcacatacacttcaagaatgttgtaaacaaccaatcaaaagtagctgctgtct |
12282566 |
T |
|
| Q |
102 |
catcatacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaatgtaaatgaacttaatcagaacaaaata |
201 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
12282565 |
catcatacagtagcgcaacaccaaataaaacactcttacgatgattgtcaaaaccaataaaggcagctgaaatgtaaatgaactaaatcagaacaaaata |
12282466 |
T |
|
| Q |
202 |
caacatatatataaattacactaaataatgaaagcaatcactaatttaag |
251 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12282465 |
caacatatatacaaattacactaaataatgaaagcaatcactaatttaag |
12282416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 246
Target Start/End: Complemental strand, 10562336 - 10562092
Alignment:
| Q |
2 |
aacaacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtct |
101 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
10562336 |
aacaacgcactagcatggtttgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtacctgctgtct |
10562237 |
T |
|
| Q |
102 |
catcatacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaatgtaaatgaacttaatcagaacaaaata |
201 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
10562236 |
catcatacggtagcgcagcaccaaataaaacactcttacgatgattgtcaaaaccaataaaggcagctgaaatgtaaatgaactaaatcagaacaaaata |
10562137 |
T |
|
| Q |
202 |
caacatatatataaattacactaaataatgaaagcaatcactaat |
246 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
10562136 |
caagatatatataaattacactaaataatgaaaacaataactaat |
10562092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 4720572 - 4720741
Alignment:
| Q |
5 |
aacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtctcat |
104 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
4720572 |
aacgcactagcctggtctgtatatatagtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtagctgctgtctcat |
4720671 |
T |
|
| Q |
105 |
catacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaat |
174 |
Q |
| |
|
| |||| ||||||| ||||||||||||||||| | |||||||||||||||| |||||||||||| ||||| |
|
|
| T |
4720672 |
cgtacaatagcgcagcaccaaataaaacactcctgcgatgattgtcaaaaccaataaaggcagctgaaat |
4720741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 4720837 - 4720877
Alignment:
| Q |
303 |
tgctagtatggaatcactaattataagaaatcacgcctcag |
343 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
4720837 |
tgctagtatgtaatcacaaattataagaaatcacgcctcag |
4720877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 2 - 248
Target Start/End: Original strand, 24406446 - 24406692
Alignment:
| Q |
2 |
aacaacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtct |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
24406446 |
aacaacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtagctgctgtct |
24406545 |
T |
|
| Q |
102 |
catcatacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaatgtaaatgaacttaatcagaacaaaata |
201 |
Q |
| |
|
||||||||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||| |||||||| |
|
|
| T |
24406546 |
catcatacaatagcgcagcaccaagtaaaacactcttacgatgattgtcaaaaccaataaaggcagctgaaatgtaaatgaactaaatcaggacaaaata |
24406645 |
T |
|
| Q |
202 |
caacatatatataaattacactaaataatgaaagcaatcactaattt |
248 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
24406646 |
caacatatatataaattacactaaataatgaaaacaatcactaattt |
24406692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 19844314 - 19844082
Alignment:
| Q |
5 |
aacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtctcat |
104 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
19844314 |
aacgcactagcctggtctgtatatatagtctgtggttttttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtagctgctgtctcat |
19844215 |
T |
|
| Q |
105 |
catacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaat--------gtaaatgaacttaatcagaaca |
196 |
Q |
| |
|
| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| || |||||||||| |
|
|
| T |
19844214 |
cgtacaatagcgcagcaccaaataaaacactcttacgatgattgtcaaaaccaataaaggcagctgaaataatgaccaataaatgacctaaatcagaaca |
19844115 |
T |
|
| Q |
197 |
aaatacaacatatatataaattacactaaataa |
229 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| |
|
|
| T |
19844114 |
aaatacaacatatatataacttacgctaaataa |
19844082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0661 (Bit Score: 161; Significance: 1e-85; HSPs: 2)
Name: scaffold0661
Description:
Target: scaffold0661; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 6767 - 6530
Alignment:
| Q |
5 |
aacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtctcat |
104 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6767 |
aacgcactagcctggtctgtatatatagtctgtggtttcttattggacatacacttctagaatgttgtaaacaaccaatcaaaagtagctgttgtctcat |
6668 |
T |
|
| Q |
105 |
catacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaat--------gtaaatgaacttaatcagaaca |
196 |
Q |
| |
|
| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| || |||||||||| |
|
|
| T |
6667 |
cgtacaatagcgcaacaccaaataaaacactcttacgatgattgtcaaaaccaataaaggcagctgaaataatgatcaataaatgacctaaatcagaaca |
6568 |
T |
|
| Q |
197 |
aaatacaacatatatataaattacactaaataatgaaa |
234 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6567 |
aaatacaacatatatataacttacactaaataatgaaa |
6530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0661; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 303 - 345
Target Start/End: Complemental strand, 6504 - 6462
Alignment:
| Q |
303 |
tgctagtatggaatcactaattataagaaatcacgcctcagaa |
345 |
Q |
| |
|
||||||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
6504 |
tgctagtctgtaatcacaaattataagaaatcacgcctcagaa |
6462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 157; Significance: 3e-83; HSPs: 4)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 166881 - 166644
Alignment:
| Q |
5 |
aacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtctcat |
104 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
166881 |
aacgcactagcctggtctgtatatatagtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtagctgctgtctcat |
166782 |
T |
|
| Q |
105 |
catacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaat--------gtaaatgaacttaatcagaaca |
196 |
Q |
| |
|
| |||| ||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||| || |||||||||| |
|
|
| T |
166781 |
cgtacaatagcgcagcaccaaataaaacactcttgcgatgattgtcaaaaccaataaaggcagctgaaataatgaccaataaatgacctaaatcagaaca |
166682 |
T |
|
| Q |
197 |
aaatacaacatatatataaattacactaaataatgaaa |
234 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
166681 |
aaatacaacatatatataacttacactaaataatgaaa |
166644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 5 - 174
Target Start/End: Complemental strand, 170829 - 170660
Alignment:
| Q |
5 |
aacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtctcat |
104 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
170829 |
aacgcactagcctggtgtgtatatatagtctgtgatttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtagctgatgtctcat |
170730 |
T |
|
| Q |
105 |
catacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaat |
174 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
170729 |
catacaatagcgcagcaccaaataaaacactcttacgatgattgtcaaaaccaataaaggcagctgaaat |
170660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 166618 - 166578
Alignment:
| Q |
303 |
tgctagtatggaatcactaattataagaaatcacgcctcag |
343 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
166618 |
tgctagtatgtaatcacaaattataagaaatcacgcctcag |
166578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 170563 - 170523
Alignment:
| Q |
303 |
tgctagtatggaatcactaattataagaaatcacgcctcag |
343 |
Q |
| |
|
||||||| || |||||| ||||||||||||||||||||||| |
|
|
| T |
170563 |
tgctagtctgtaatcacaaattataagaaatcacgcctcag |
170523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 153; Significance: 8e-81; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 17223881 - 17223644
Alignment:
| Q |
5 |
aacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtctcat |
104 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
17223881 |
aacgcactagcctggtctgtatatatagtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtagctgctgtctcat |
17223782 |
T |
|
| Q |
105 |
catacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaat--------gtaaatgaacttaatcagaaca |
196 |
Q |
| |
|
| |||| ||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||| || |||||||||| |
|
|
| T |
17223781 |
cgtacaatagcgcagcaccaaataaaacactcttgcgatgattgtcaaaaccaataaaggcagctgaaataatgaccaataaatgacctaaatcagaaca |
17223682 |
T |
|
| Q |
197 |
aaatacaacatatatataaattacactaaataatgaaa |
234 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
17223681 |
aaatacaacatatatataacttacactaaataacgaaa |
17223644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 344 - 586
Target Start/End: Complemental strand, 18663581 - 18663341
Alignment:
| Q |
344 |
aatgataaaacaaaaatgagaaactctcgatcatagcatatctaataagcatgtactcaaacactaaaattcatcacaaaaataattaaactgttgagaa |
443 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| | |||||||||| | | | ||||||||| |||||||||||||||| ||||||||| ||| | || |
|
|
| T |
18663581 |
aatggtaaaacaaaaatgagaaactt--gatcatggaatatctaatatgtacgcgctcaaacaccaaaattcatcacaaaactaattaaacagttcaaaa |
18663484 |
T |
|
| Q |
444 |
aaataatttgaaattgattgagatgattcgaccagcttggatgttcattaatttgaaaatcaaatggactactgaaatgtcatggctcattctcccacct |
543 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18663483 |
aaataatttgaaattgattgagatgattcaaccagcttggatgttcgttaatttggaaatcaaatggactactgaaatgtcatggctcattcccccacct |
18663384 |
T |
|
| Q |
544 |
agtcaaatggattcaatagatgttcttgatactctcagtatct |
586 |
Q |
| |
|
||| ||||| |||||| |||||| ||||||||| ||||||||| |
|
|
| T |
18663383 |
agtaaaatgcattcaacagatgtccttgatactgtcagtatct |
18663341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 17059235 - 17059453
Alignment:
| Q |
5 |
aacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtctcat |
104 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
17059235 |
aacgcactagcctggtctgtatatatagtctgtgatttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtagctgctgtctcat |
17059334 |
T |
|
| Q |
105 |
catacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaat--------gtaaatgaacttaatcagaaca |
196 |
Q |
| |
|
| |||| ||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||| || |||||||||| |
|
|
| T |
17059335 |
cgtacaatagcgcagcaccaaataaaacactcttgcgatgattgtcaaaaccaataaaggcagctgaaataatgaccaataaatgacctaaatcagaaca |
17059434 |
T |
|
| Q |
197 |
aaatacaacatatatataa |
215 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
17059435 |
aaatacaacatatatataa |
17059453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 5 - 215
Target Start/End: Complemental strand, 17593422 - 17593204
Alignment:
| Q |
5 |
aacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtctcat |
104 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
17593422 |
aacgcactagcctggtctgtatatatagtctgtgatttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtagctgctgtctcat |
17593323 |
T |
|
| Q |
105 |
catacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaat--------gtaaatgaacttaatcagaaca |
196 |
Q |
| |
|
| |||| ||||| | ||||||||||||||||||| |||||||||||||||| |||||||| || ||||| ||||||| || |||||||||| |
|
|
| T |
17593322 |
cgtacaatagcgaagcaccaaataaaacactcttgcgatgattgtcaaaaccaataaaggaagatgaaataatgaccaataaatgacctaaatcagaaca |
17593223 |
T |
|
| Q |
197 |
aaatacaacatatatataa |
215 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
17593222 |
aaatacaacatatatataa |
17593204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 17223618 - 17223578
Alignment:
| Q |
303 |
tgctagtatggaatcactaattataagaaatcacgcctcag |
343 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
17223618 |
tgctagtatgtaatcacaaattataagaaatcacgcctcag |
17223578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 11973271 - 11973034
Alignment:
| Q |
5 |
aacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtctcat |
104 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
11973271 |
aacgcactagcctggtctgtatatatagtttgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtagctactgtctcat |
11973172 |
T |
|
| Q |
105 |
catacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaat--------gtaaatgaacttaatcagaaca |
196 |
Q |
| |
|
| |||| ||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||| || |||||||||| |
|
|
| T |
11973171 |
cgtacaatagcgcagcaccaaataaaacactcttgcgatgattgtcaaaaccaataaaggcagctgaaataatgaccaataaatgacctaaatcagaaca |
11973072 |
T |
|
| Q |
197 |
aaatacaacatatatataaattacactaaataatgaaa |
234 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11973071 |
aaatacaacatatatataacttacactaaataatgaaa |
11973034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 303 - 342
Target Start/End: Complemental strand, 11973008 - 11972969
Alignment:
| Q |
303 |
tgctagtatggaatcactaattataagaaatcacgcctca |
342 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
11973008 |
tgctagtatgtaatcacaaattataagaaatcacgcctca |
11972969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 2e-72; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 344 - 586
Target Start/End: Original strand, 43063782 - 43064018
Alignment:
| Q |
344 |
aatgataaaacaaaaatgagaaactctcgatcatagcatatctaataagcatgtactcaaacactaaaattcatcacaaaaataattaaactgttgagaa |
443 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||| | || |
|
|
| T |
43063782 |
aatgataaaacaaaaatgacaaactca--atcat----tatctaataagtatgcgctcaaacactaaaattcatcacaaaaataattaaaccgttcaaaa |
43063875 |
T |
|
| Q |
444 |
aaataatttgaaattgattgagatgattcgaccagcttggatgttcattaatttgaaaatcaaatggactactgaaatgtcatggctcattctcccacct |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||| | |
|
|
| T |
43063876 |
aaataatttgaaattgattgagatgattcgaccagcttggatgttcattaatttggaaatcaaatggactactgaaatgtcatgcctcattcccccacat |
43063975 |
T |
|
| Q |
544 |
agtcaaatggattcaatagatgttcttgatactctcagtatct |
586 |
Q |
| |
|
||| ||||| || ||| |||||| ||||||||| || |||||| |
|
|
| T |
43063976 |
agtaaaatgcatccaacagatgtccttgatactgtcggtatct |
43064018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 5 - 215
Target Start/End: Complemental strand, 54754844 - 54754626
Alignment:
| Q |
5 |
aacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtctcat |
104 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
54754844 |
aacgcactagcctggtctgtatatatagtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtagctgctgtctcat |
54754745 |
T |
|
| Q |
105 |
catacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaat--------gtaaatgaacttaatcagaaca |
196 |
Q |
| |
|
| |||| ||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||| ||||| ||||||| || |||||||||| |
|
|
| T |
54754744 |
cgtacaatagcgcagcaccaaataaaacactcttgcgatgattgtcaaaaccaataaaggcagatgaaataatgaccaataaatgacctaaatcagaaca |
54754645 |
T |
|
| Q |
197 |
aaatacaacatatatataa |
215 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
54754644 |
aaatacaacatacatataa |
54754626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 54754577 - 54754537
Alignment:
| Q |
303 |
tgctagtatggaatcactaattataagaaatcacgcctcag |
343 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
54754577 |
tgctagtatgtaatcacaaattataagaaatcacgcctcag |
54754537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 137; Significance: 3e-71; HSPs: 2)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 5 - 234
Target Start/End: Complemental strand, 29317 - 29080
Alignment:
| Q |
5 |
aacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtctcat |
104 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
29317 |
aacgcactagcctggtctgtatatatagtctgtggtttcttattggacatacacttcaagaattttgtaaacaaccaatcaaaagtagctgctgtctcat |
29218 |
T |
|
| Q |
105 |
catacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaat--------gtaaatgaacttaatcagaaca |
196 |
Q |
| |
|
| |||| |||| || ||||||||||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||| || |||||||| | |
|
|
| T |
29217 |
cgtacaatagctcagcaccaaataaaacactcttgcgatgattgtcaaaaccaataaaggcagctgaaataatgaccaataaatgacctaaatcagaata |
29118 |
T |
|
| Q |
197 |
aaatacaacatatatataaattacactaaataatgaaa |
234 |
Q |
| |
|
|||||||||||| |||||| ||||| |||||||||||| |
|
|
| T |
29117 |
aaatacaacatacatataacttacaataaataatgaaa |
29080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Complemental strand, 29054 - 29014
Alignment:
| Q |
303 |
tgctagtatggaatcactaattataagaaatcacgcctcag |
343 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
29054 |
tgctagtatgtaatcacaaattataagaaatcacgcctcag |
29014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0337 (Bit Score: 135; Significance: 5e-70; HSPs: 1)
Name: scaffold0337
Description:
Target: scaffold0337; HSP #1
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 425 - 586
Target Start/End: Complemental strand, 12524 - 12362
Alignment:
| Q |
425 |
ataattaaactgtt-gagaaaaataatttgaaattgattgagatgattcgaccagcttggatgttcattaatttgaaaatcaaatggactactgaaatgt |
523 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12524 |
ataattaaactgtttgaaaaaaataatttgaaattgattgagatgattcgaccagcttggatgttcattaatttgaaaatcaaatggactactgagatgt |
12425 |
T |
|
| Q |
524 |
catggctcattctcccacctagtcaaatggattcaatagatgttcttgatactctcagtatct |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
12424 |
catggctcattctcccacctagtcaaatggattcaacagatgtccttgatactgtcagtatct |
12362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 128132 - 128301
Alignment:
| Q |
5 |
aacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtctcat |
104 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
128132 |
aacgcactagcctggtctgtatatatagtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtagctgctgtctcat |
128231 |
T |
|
| Q |
105 |
catacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaat |
174 |
Q |
| |
|
| |||| ||||||| ||||||||||||||||| | |||||||||||||||| |||||||||||| ||||| |
|
|
| T |
128232 |
cgtacaatagcgcagcaccaaataaaacactcctgcgatgattgtcaaaaccaataaaggcagctgaaat |
128301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 128397 - 128437
Alignment:
| Q |
303 |
tgctagtatggaatcactaattataagaaatcacgcctcag |
343 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
128397 |
tgctagtatgtaatcacaaattataagaaatcacgcctcag |
128437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 4e-67; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 5 - 174
Target Start/End: Original strand, 44350335 - 44350504
Alignment:
| Q |
5 |
aacgcactagcctggtctgtatatatcgtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtctcat |
104 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
44350335 |
aacgcactagcctggtctgtatatatagtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtagctgctgtctcat |
44350434 |
T |
|
| Q |
105 |
catacagtagcgcaccaccaaataaaacactcttacgatgattgtcaaaactaataaaggcagcagaaat |
174 |
Q |
| |
|
| |||| ||||||| ||||||||||||||||| | |||||||||||||||| |||||||||||| ||||| |
|
|
| T |
44350435 |
cgtacaatagcgcagcaccaaataaaacactcctgcgatgattgtcaaaaccaataaaggcagctgaaat |
44350504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 32 - 234
Target Start/End: Original strand, 21175371 - 21175583
Alignment:
| Q |
32 |
gtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtatctgttgtctcatcatacagtagcgcaccaccaaataaaa |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||| ||||||| |||||||||||| |
|
|
| T |
21175371 |
gtctgtggtttcttattggacatacacttcaagaatgttgtaaacaaccaatcaaaagtagctgctgtctcatcgtacaatagcgcagcaccaaataaaa |
21175470 |
T |
|
| Q |
132 |
cactcttacgatgattgtcaaaactaataaaggcagcagaaat--------gtaaatgaacttaatcagaacaaaatacaac--atatatataaattaca |
221 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||| ||||| ||||||| || ||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
21175471 |
cactcttgcgatgattgtcaaaaccaataaaggcagctgaaataatgaccaataaatgacctaaatcagaacaaaatacaacatatatatataacttaca |
21175570 |
T |
|
| Q |
222 |
ctaaataatgaaa |
234 |
Q |
| |
|
||||||||||||| |
|
|
| T |
21175571 |
ctaaataatgaaa |
21175583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 21175609 - 21175649
Alignment:
| Q |
303 |
tgctagtatggaatcactaattataagaaatcacgcctcag |
343 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
21175609 |
tgctagtatgtaatcacaaattataagaaatcacgcctcag |
21175649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 44350600 - 44350640
Alignment:
| Q |
303 |
tgctagtatggaatcactaattataagaaatcacgcctcag |
343 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
44350600 |
tgctagtatgtaatcacaaattataagaaatcacgcctcag |
44350640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 149 - 246
Target Start/End: Original strand, 17152 - 17249
Alignment:
| Q |
149 |
tcaaaactaataaaggcagcagaaatgtaaatgaacttaatcagaacaaaatacaacatatatataaattacactaaataatgaaagcaatcactaat |
246 |
Q |
| |
|
||||||| |||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17152 |
tcaaaaccaataaaagcagctgaaatgtaaatgaactaaatcagaacaaaatacaacatatatataaattacactaaataatgaaaacaatcactaat |
17249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1281 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold1281
Description:
Target: scaffold1281; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 140 - 234
Target Start/End: Original strand, 1 - 103
Alignment:
| Q |
140 |
cgatgattgtcaaaactaataaaggcagcagaaatg--------taaatgaacttaatcagaacaaaatacaacatatatataaattacactaaataatg |
231 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||| ||||||| || ||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1 |
cgatgattgtcaaaaccaataaaggcagctgaaataatgaccaataaatgacctaaatcataacaaaatacaacatatatataacttacactaaataatg |
100 |
T |
|
| Q |
232 |
aaa |
234 |
Q |
| |
|
||| |
|
|
| T |
101 |
aaa |
103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1281; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 129 - 169
Alignment:
| Q |
303 |
tgctagtatggaatcactaattataagaaatcacgcctcag |
343 |
Q |
| |
|
|||||||||| |||||| ||||| ||||||||||||||||| |
|
|
| T |
129 |
tgctagtatgtaatcacaaattagaagaaatcacgcctcag |
169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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