View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21544_high_9 (Length: 324)
Name: NF21544_high_9
Description: NF21544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21544_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 126; Significance: 6e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 11 - 172
Target Start/End: Original strand, 37483645 - 37483804
Alignment:
| Q |
11 |
cacagaccataaactctatcagtcaaacaccaaaaacaaatacaatttaagtctctgcgcaattatagagtgttttggttttagtccctgtaagnnnnnn |
110 |
Q |
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| T |
37483645 |
cacagaccataaactctatcaatcaaacaccaaaaacaaatacaatttaagtctctgc--aattatagagtgttttggttttagtccctgtaagtttttt |
37483742 |
T |
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| Q |
111 |
ngtttcaactcagtccctgcaaatttaaaacaagagtttttgaatttgcaggaaccgaatac |
172 |
Q |
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| T |
37483743 |
tgtttcaactcagtccctgcaaatttaaaacaagagtttttgaatttgcaggaaccgaatac |
37483804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 211 - 324
Target Start/End: Original strand, 37483843 - 37483955
Alignment:
| Q |
211 |
cactataattgcggaaactagaatcatgaataacactataattgcggaaacttaaataataccaagatcataaacaacaggtctacttccagatttgcgt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37483843 |
cactataattgcggaaactagaatcatgaataacactataatt-cggaaacttaaataataccaagatcataaacaacaggtctacttccagatttgcgt |
37483941 |
T |
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| Q |
311 |
aagtgaggactatt |
324 |
Q |
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|||||||||||||| |
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| T |
37483942 |
aagtgaggactatt |
37483955 |
T |
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