View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21544_low_1 (Length: 404)
Name: NF21544_low_1
Description: NF21544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21544_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 248
Target Start/End: Original strand, 49097194 - 49097429
Alignment:
| Q |
15 |
aagaagagattggatggaaatatatggttaagcaaagaaacaagaatacaattacatgtcaatttgcaagtttatcgtagaagttttgtata--tgtgtg |
112 |
Q |
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| T |
49097194 |
aagaagagattagatggaaatatatggttaagcaaagaaacaagaatacaattacatgtcaatttgcaagtttatcgttgaagttttgtatatatgtgtg |
49097293 |
T |
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| Q |
113 |
tgtgacaatcacgtaattatcctgcttatttatttattcaaagtaatactgaaaatgcgtcaatttgcaaagtctttttaagcaaatacacgcatttaac |
212 |
Q |
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| T |
49097294 |
tgtgacaatcacgtaattatcctgctcatttgtttattcaacgtaacactgaaaatgcgtcaatttgcaaaatctttttaagcaaatacaagcatttaac |
49097393 |
T |
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| Q |
213 |
catttttcaatgattaggacaaaagtgactaattcc |
248 |
Q |
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| T |
49097394 |
cattttccaatgattaggacaaaagtgactaattcc |
49097429 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 333 - 389
Target Start/End: Original strand, 49097514 - 49097570
Alignment:
| Q |
333 |
ggttaaattcttctttttaaataagtgtattgttgttttgtgtttttctcaaagttt |
389 |
Q |
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| T |
49097514 |
ggttaaattcttctttttaaataagtgtattgttgttttgtgtttttctcaaagttt |
49097570 |
T |
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