View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21544_low_2 (Length: 368)
Name: NF21544_low_2
Description: NF21544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21544_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 121 - 351
Target Start/End: Original strand, 561237 - 561470
Alignment:
| Q |
121 |
aagttagttgaatgttaaatattttctattaagatacatgtaaaagtcacttaaactttaaattttaatgtaaaatcacattgtaaatgaaaagaaatct |
220 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
561237 |
aagttagtcaaatgttaaatattttctattaagatacatgtaaaagtcacttaaactttaaatttcaatgtaaaatcacattgtaaataaaaagaaatct |
561336 |
T |
|
| Q |
221 |
tagcatcaaattagaattaattccaagacaaaatcaattctattt---gacatgcagatatgtcaaaatctaatgtataattcttgaatcaattttgccc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
561337 |
tagcatcaaattagaattaattccaagacaaaatcaattctatttgaggacatgcagatatgtcaaaatctaatgtataattcttgaatcaattttgccc |
561436 |
T |
|
| Q |
318 |
tatccccaaccatactttaaataatgttataatt |
351 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
561437 |
tatccccaaccatactttaaataatgttataatt |
561470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 561122 - 561058
Alignment:
| Q |
39 |
tttctcaaatttgttaattcttgttaagttgtattgaactgagcttttcacttcagttataaatt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
561122 |
tttctcaaatttgttaattcttgttaagttgtattgaactgagcttttcacttcagttataaatt |
561058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 561240 - 561206
Alignment:
| Q |
1 |
acttttgactaaaattaattttacaagtcaccgta |
35 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
561240 |
acttttgactaaaattaattttacaagtcaccgta |
561206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University