View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21545_high_10 (Length: 493)

Name: NF21545_high_10
Description: NF21545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21545_high_10
NF21545_high_10
[»] chr6 (4 HSPs)
chr6 (8-476)||(33711076-33711547)
chr6 (418-461)||(21166711-21166754)
chr6 (418-458)||(21218114-21218154)
chr6 (420-476)||(20998350-20998409)
[»] chr8 (1 HSPs)
chr8 (418-476)||(24943728-24943786)
[»] chr1 (3 HSPs)
chr1 (293-386)||(11331221-11331314)
chr1 (293-386)||(11489242-11489335)
chr1 (287-360)||(39140681-39140754)
[»] chr7 (2 HSPs)
chr7 (287-406)||(25731471-25731590)
chr7 (340-404)||(44192094-44192158)
[»] chr4 (1 HSPs)
chr4 (332-406)||(40424541-40424615)
[»] scaffold0060 (1 HSPs)
scaffold0060 (443-476)||(21709-21742)
[»] scaffold0016 (1 HSPs)
scaffold0016 (420-460)||(70767-70807)


Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 8 - 476
Target Start/End: Complemental strand, 33711547 - 33711076
Alignment:
Q  8 attattctttgtttgatattgtttcttgaagttattgtataacttttgtttcttttcttctttgacttgagtgtttaattaatttaaatttggtaaataa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33711547 attattctttgtttgatattgtttcttgaagttattgtataacttttgtttcttttcttctttgacttgagtgtttaattaatttaaatttggtaaataa 33711448  T
Q  108 tnnnnnnngaatgatcaaatctattagcaaccttgactagtaatgaatgcatatttgttaaaatgtattgaannnnnnnnctttctgaatttacatgctg 207  Q
    |       |||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||        ||||||||||||||||||||    
T  33711447 taaaaaaagaatgatctaatctattagcaaccttgagtagtaatgaatgcatattagttaaaatgtattgaattttttttctttctgaatttacatgctg 33711348  T
Q  208 tagtacattaaacaataagaatgtctcttacgcaccggtttctatacttaatacattaaacaataagataagattatccggaaaaatttacaggttaata 307  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||    
T  33711347 tagtacattaaacaataagaatgtctcttacgtaccggtttctatacttaatatattaaacaataagataagactatacggaaaaatttacaggttaata 33711248  T
Q  308 agttggatttaaatatggtctcggataaaatatgatgacataatttgattcatatagtcaacctcatttaataagataagatctggttgttgttg---tt 404  Q
    |||||||||||||||||||||||| || || |||||||| ||||||||| ||||||||||| | ||||||||||||||||| |||||||||||||   ||    
T  33711247 agttggatttaaatatggtctcgggtagaacatgatgacgtaatttgatccatatagtcaatcccatttaataagataagacctggttgttgttgttgtt 33711148  T
Q  405 gtagaggagcacatccaatggataaatgctttcttattgtaagattatgagttgttactaaattcttctttt 476  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  33711147 gtagaggagcacatccaatggataaatgctttatgattgtaagattatgagttgttactaaattcttctttt 33711076  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 418 - 461
Target Start/End: Complemental strand, 21166754 - 21166711
Alignment:
Q  418 tccaatggataaatgctttcttattgtaagattatgagttgtta 461  Q
    |||||||| ||||||||||||||||||||||||||||| |||||    
T  21166754 tccaatgggtaaatgctttcttattgtaagattatgagctgtta 21166711  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 458
Target Start/End: Complemental strand, 21218154 - 21218114
Alignment:
Q  418 tccaatggataaatgctttcttattgtaagattatgagttg 458  Q
    |||||||||||||||||| ||||| ||||||||||||||||    
T  21218154 tccaatggataaatgcttacttatagtaagattatgagttg 21218114  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 476
Target Start/End: Original strand, 20998350 - 20998409
Alignment:
Q  420 caatggataaatgctttcttattgtaagattatga---gttgttactaaattcttctttt 476  Q
    ||||||||| |||||| ||||| ||||||||||||   |||||| |||||||||||||||    
T  20998350 caatggatagatgcttgcttatagtaagattatgagttgttgttgctaaattcttctttt 20998409  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 418 - 476
Target Start/End: Complemental strand, 24943786 - 24943728
Alignment:
Q  418 tccaatggataaatgctttcttattgtaagattatgagttgttactaaattcttctttt 476  Q
    |||||||||||||||||| ||||| ||| |||||||||||||| || ||||||||||||    
T  24943786 tccaatggataaatgcttgcttatggtatgattatgagttgttgctgaattcttctttt 24943728  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 11331314 - 11331221
Alignment:
Q  293 atttacaggttaataagttggatttaaatatggtctcggataaaatatgatgacataatttgattcatatagtcaacctcatttaataagataa 386  Q
    ||||| |||||||||||||||||||||||||||| |  ||| ||| || ||||  ||||||||| |||| |||| | |||||||| | ||||||    
T  11331314 atttagaggttaataagttggatttaaatatggtttatgatgaaacattatgatgtaatttgatccataaagtcgatctcatttactcagataa 11331221  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 293 - 386
Target Start/End: Complemental strand, 11489335 - 11489242
Alignment:
Q  293 atttacaggttaataagttggatttaaatatggtctcggataaaatatgatgacataatttgattcatatagtcaacctcatttaataagataa 386  Q
    ||||| |||||||||||||||||||||||||||| |  ||| ||| || ||||  ||||||||| |||| |||| | |||||||| | ||||||    
T  11489335 atttagaggttaataagttggatttaaatatggtttatgatgaaacattatgatgtaatttgatccataaagtcgatctcatttactcagataa 11489242  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 360
Target Start/End: Original strand, 39140681 - 39140754
Alignment:
Q  287 ggaaaaatttacaggttaataagttggatttaaatatggtctcggataaaatatgatgacataatttgattcat 360  Q
    ||||||||||| |||||||| ||||||||  ||||||||| || |||| || || ||| | |||||||||||||    
T  39140681 ggaaaaatttagaggttaattagttggatccaaatatggtttcagatagaacattatggcgtaatttgattcat 39140754  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 406
Target Start/End: Complemental strand, 25731590 - 25731471
Alignment:
Q  287 ggaaaaatttacaggttaataagttggatttaaatatggtctcggataaaatatgatgacataatttgattcatatagtcaacctcatttaataagataa 386  Q
    ||||| |||||||||||||||| ||||||  ||||||||| ||| ||| || || ||| | |||||||||  || |||   ||||| ||||||  |||||    
T  25731590 ggaaagatttacaggttaataaattggatccaaatatggtttcgaatagaacattatggcgtaatttgatcaatgtagcagacctcgtttaatgggataa 25731491  T
Q  387 gatctggttgttgttgttgt 406  Q
    ||  ||||||||||||||||    
T  25731490 gacttggttgttgttgttgt 25731471  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 404
Target Start/End: Complemental strand, 44192158 - 44192094
Alignment:
Q  340 tgatgacataatttgattcatatagtcaacctcatttaataagataagatctggttgttgttgtt 404  Q
    |||||||||  |||||| || ||||||||||||| ||||| | ||||||| || |||||||||||    
T  44192158 tgatgacattgtttgatacaaatagtcaacctcacttaatgatataagatttgattgttgttgtt 44192094  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 406
Target Start/End: Original strand, 40424541 - 40424615
Alignment:
Q  332 ataaaatatgatgacataatttgattcatatagtcaacctcatttaataagataagatctggttgttgttgttgt 406  Q
    ||||||||| ||||| |||||| ||  || ||||| |||||||||| || |||||||  ||||||||||||||||    
T  40424541 ataaaatattatgacgtaatttaatctatgtagtcgacctcatttagtaggataagacttggttgttgttgttgt 40424615  T

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Target: scaffold0060 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 476
Target Start/End: Original strand, 21709 - 21742
Alignment:
Q  443 gtaagattatgagttgttactaaattcttctttt 476  Q
    |||||||||||||||||||||||||| |||||||    
T  21709 gtaagattatgagttgttactaaattgttctttt 21742  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 420 - 460
Target Start/End: Original strand, 70767 - 70807
Alignment:
Q  420 caatggataaatgctttcttattgtaagattatgagttgtt 460  Q
    |||||||||||||||| ||| | ||||||||||||||||||    
T  70767 caatggataaatgcttgcttgtagtaagattatgagttgtt 70807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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