View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21545_high_12 (Length: 485)
Name: NF21545_high_12
Description: NF21545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21545_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 19 - 474
Target Start/End: Original strand, 47212364 - 47212819
Alignment:
| Q |
19 |
cttaggattcaagaatgatgctgcactttactctgctgtgattactggtgcaatcaatgttatctcaactatagtttcaatatattcagtggataaactt |
118 |
Q |
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| T |
47212364 |
cttaggatttaagaatgatgctgcactttactctgctgtgattactggtgcaatcaatgtcatctcaactatagtttcaatatattcagtggataaactt |
47212463 |
T |
|
| Q |
119 |
ggtcgtcgaaagctattactcgaagccggtgttcaaatgttcttgtcacaaatggtgatagcaattgtactaggaatcaaagtgaaggatcattctgagg |
218 |
Q |
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| T |
47212464 |
ggtcgtcgaaagctattactggaagctggtgttcaaatgttgttgtcacaaatggtgatagcaattgtactaggaatcaaagtgaaggatcattctgagg |
47212563 |
T |
|
| Q |
219 |
aactctcaaaagggtatgcagctcttgtagttgttatggtttgtatttttgtgtcagcatttgcatggtcatggggtccacttgcttggcttattccaag |
318 |
Q |
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| T |
47212564 |
aactctcaaaagggtatgcagctcttgtagttgttatggtttgtatttttgtgtcagcatttgcatggtcatggggtccacttgcttggcttattccaag |
47212663 |
T |
|
| Q |
319 |
tgagatatttccactagagactcgttctgcaggacaaagtgtaacagtttgtgtcaacttcctcttcactgctgtcattgcacaagctttcctttcaatg |
418 |
Q |
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| T |
47212664 |
tgagatatttccactagagactcgttctgcaggacaaagtgtaacagtttgtgtcaacttcctcttcactgctgtcattgcacaagctttcctttcaatg |
47212763 |
T |
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| Q |
419 |
ctttgctatttcaagtttggtatcttctttttcttctctggttggatcttgttcat |
474 |
Q |
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| T |
47212764 |
ctttgctatttcaagtttggtatcttctttttcttctctggttggatcttgttcat |
47212819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 360
Target Start/End: Original strand, 47185995 - 47186077
Alignment:
| Q |
278 |
tttgcatggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagtgt |
360 |
Q |
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| T |
47185995 |
tttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgt |
47186077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 278 - 360
Target Start/End: Original strand, 47198534 - 47198616
Alignment:
| Q |
278 |
tttgcatggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagtgt |
360 |
Q |
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| T |
47198534 |
tttgcatggtcatggggtccacttggttggttaattcctagtgagacatttcctttggagactagatcagctggacaaagtgt |
47198616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 23 - 459
Target Start/End: Complemental strand, 748923 - 748487
Alignment:
| Q |
23 |
ggattcaagaatgatgctgcactttactctgctgtgattactggtgcaatcaatgttatctcaactatagtttcaatatattcagtggataaacttggtc |
122 |
Q |
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| T |
748923 |
ggattcaagaatgatgcttccctctattcagctgtgattactggtgcagttaatgtcctctccacaattgtgtctatctacttcgttgataaacttggtc |
748824 |
T |
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| Q |
123 |
gtcgaaagctattactcgaagccggtgttcaaatgttcttgtcacaaatggtgatagcaattgtactaggaatcaaagtgaaggatcattctgaggaact |
222 |
Q |
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| T |
748823 |
gtcgtatgttactgttggaagccggtgtacaaatgttcttgtctcaaattgtgatagcaatcattcttgggatcaaggtgactgatcattctgacgatct |
748724 |
T |
|
| Q |
223 |
ctcaaaagggtatgcagctcttgtagttgttatggtttgtatttttgtgtcagcatttgcatggtcatggggtccacttgcttggcttattccaagtgag |
322 |
Q |
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| T |
748723 |
ttcaaaaggctatgcaatatttgttgttatcttggtatgcactttcgtgtctgcctttgcttggtcttggggtcctctcggttggcttattccaagtgag |
748624 |
T |
|
| Q |
323 |
atatttccactagagactcgttctgcaggacaaagtgtaacagtttgtgtcaacttcctcttcactgctgtcattgcacaagctttcctttcaatgcttt |
422 |
Q |
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| T |
748623 |
acatttccactcgagactcgatcagctggacaaagtgtcacagtttgtgtcaacatgttgttcacctttgtcattgctcaggcttttctatctatgttat |
748524 |
T |
|
| Q |
423 |
gctatttcaagtttggtatcttctttttcttctctgg |
459 |
Q |
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|| | ||||||||||| |||||||| ||||||||||| |
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| T |
748523 |
gccacttcaagtttggaatcttcttgttcttctctgg |
748487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 41414096 - 41414021
Alignment:
| Q |
283 |
atggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagt |
358 |
Q |
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||||||||||||||| |||| |||| ||||||||||||||||||||| |||| | ||||| ||||| |||||| |
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| T |
41414096 |
atggtcatggggtcctcttggttggacaattccaagtgagatatttccattagaaatccgttcagcagggcaaagt |
41414021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 362
Target Start/End: Original strand, 36202701 - 36202786
Alignment:
| Q |
277 |
atttgcatggtcatggggtccacttgcttggcttattccaagtgagatatttccactagagactcgttctgcaggacaaagtgtaa |
362 |
Q |
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| T |
36202701 |
atttgcttggtcatggggtcctcttggttggttggttcctagtgagattttcccattggagattcgttctgcagctcaaagtgtaa |
36202786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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