View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21545_high_19 (Length: 377)
Name: NF21545_high_19
Description: NF21545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21545_high_19 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 9 - 377
Target Start/End: Complemental strand, 45501268 - 45500900
Alignment:
| Q |
9 |
agatattattaagataaaaggtgatttaatagttcttttttgcatgtgtgtgattctaaactaaggatctggaaacagcactgagagattcaactgccaa |
108 |
Q |
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| T |
45501268 |
agatattattaagataaaaggtgatttaatagttcttttttgcatgtgtgtgattctaaacgaaggatctggaaacagcactgagagattcaactgccaa |
45501169 |
T |
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| Q |
109 |
gtggaagattgttgtgggacatcatccagtgagaagcatagggcaccacggcgacaccaaagagctcttaacacacctcctgccaattcttgaggtcact |
208 |
Q |
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| T |
45501168 |
gtggaagattgttgtgggacatcatccagtgagaagcatagggcaccacggcgacaccaaagagctcttaacacacctcctgccaattcttgaggtcact |
45501069 |
T |
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| Q |
209 |
cattatatataactagtactcatactgtcctactagttataaagataaggtgcatcgtcctttatttaccgataaacatctctcattttaaaatgaaatt |
308 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45501068 |
cattatatataactagcactcatactgtcctactagttataaagataaggtgcatcgtcctttatttactgataaacatctctcattttaaaatgaaatt |
45500969 |
T |
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| Q |
309 |
tgcaggccaacaatgttgatatgtacatgaatgggcacgaccactgcttggaacacataagtagcaccg |
377 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45500968 |
tgcaggccaacaatgttgatatgtacatgaatgggcacgaccactgcttggaacacataagtagcaccg |
45500900 |
T |
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