View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21545_high_23 (Length: 262)

Name: NF21545_high_23
Description: NF21545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21545_high_23
NF21545_high_23
[»] chr2 (13 HSPs)
chr2 (5-233)||(26650839-26651069)
chr2 (24-235)||(18929235-18929445)
chr2 (24-227)||(17402729-17402932)
chr2 (5-214)||(25520391-25520601)
chr2 (24-183)||(31404046-31404205)
chr2 (11-183)||(24543870-24544042)
chr2 (11-62)||(19878981-19879033)
chr2 (24-150)||(20478255-20478379)
chr2 (22-135)||(29891263-29891376)
chr2 (80-131)||(28760672-28760724)
chr2 (82-168)||(17162015-17162101)
chr2 (82-183)||(17636690-17636791)
chr2 (80-127)||(15438056-15438104)
[»] chr5 (17 HSPs)
chr5 (12-207)||(19217982-19218177)
chr5 (27-193)||(20060802-20060975)
chr5 (5-193)||(20064457-20064653)
chr5 (34-193)||(20058658-20058824)
chr5 (24-142)||(23210122-23210240)
chr5 (5-142)||(20713228-20713366)
chr5 (5-142)||(25951315-25951452)
chr5 (11-111)||(23379373-23379474)
chr5 (24-183)||(17167275-17167433)
chr5 (77-183)||(19924022-19924128)
chr5 (35-231)||(23355581-23355777)
chr5 (50-183)||(24878356-24878489)
chr5 (77-183)||(19926749-19926855)
chr5 (29-162)||(17987487-17987619)
chr5 (200-231)||(24878288-24878319)
chr5 (82-131)||(31533052-31533102)
chr5 (155-187)||(25951260-25951292)
[»] chr7 (11 HSPs)
chr7 (24-233)||(20145813-20146021)
chr7 (11-231)||(2546914-2547131)
chr7 (5-215)||(14987066-14987278)
chr7 (5-215)||(15416677-15416889)
chr7 (11-227)||(17600539-17600754)
chr7 (11-233)||(3743380-3743608)
chr7 (24-193)||(24832402-24832577)
chr7 (24-186)||(4173452-4173615)
chr7 (31-135)||(10649240-10649344)
chr7 (50-182)||(18046371-18046501)
chr7 (80-135)||(9022558-9022614)
[»] chr6 (16 HSPs)
chr6 (5-233)||(22397548-22397777)
chr6 (24-224)||(17524797-17524998)
chr6 (11-142)||(16177304-16177436)
chr6 (11-142)||(1177214-1177349)
chr6 (24-138)||(15830026-15830140)
chr6 (50-183)||(18713709-18713842)
chr6 (50-183)||(17947890-17948023)
chr6 (78-183)||(14762985-14763090)
chr6 (80-181)||(28712360-28712461)
chr6 (80-131)||(13002854-13002906)
chr6 (99-193)||(31126249-31126351)
chr6 (98-168)||(25945846-25945916)
chr6 (82-131)||(24154179-24154229)
chr6 (80-124)||(10163272-10163317)
chr6 (80-131)||(16143188-16143240)
chr6 (80-183)||(16793265-16793368)
[»] chr8 (22 HSPs)
chr8 (11-233)||(28371034-28371257)
chr8 (12-228)||(9218079-9218298)
chr8 (11-142)||(23540219-23540351)
chr8 (104-230)||(10660970-10661095)
chr8 (11-183)||(9286326-9286498)
chr8 (11-145)||(16600591-16600725)
chr8 (30-172)||(13110204-13110345)
chr8 (5-111)||(10661748-10661856)
chr8 (95-142)||(26136195-26136242)
chr8 (32-172)||(18672125-18672261)
chr8 (77-183)||(22713661-22713767)
chr8 (11-75)||(24577344-24577408)
chr8 (33-168)||(25095052-25095187)
chr8 (11-183)||(27123582-27123752)
chr8 (80-131)||(15340931-15340983)
chr8 (80-131)||(15429996-15430048)
chr8 (80-131)||(15521300-15521352)
chr8 (80-131)||(41652021-41652073)
chr8 (122-168)||(9006930-9006976)
chr8 (80-131)||(23355487-23355539)
chr8 (80-131)||(32352217-32352269)
chr8 (80-131)||(32368878-32368930)
[»] chr3 (17 HSPs)
chr3 (5-226)||(24699055-24699275)
chr3 (5-233)||(15686859-15687089)
chr3 (11-227)||(26010836-26011055)
chr3 (31-214)||(13428733-13428914)
chr3 (11-206)||(4769742-4769937)
chr3 (11-231)||(4765689-4765916)
chr3 (11-233)||(4832516-4832740)
chr3 (35-177)||(23378488-23378631)
chr3 (11-142)||(7148790-7148922)
chr3 (5-150)||(9033475-9033622)
chr3 (11-139)||(29614594-29614724)
chr3 (11-142)||(16242937-16243069)
chr3 (50-173)||(27304424-27304547)
chr3 (99-173)||(8737234-8737308)
chr3 (99-173)||(9089472-9089546)
chr3 (122-168)||(13409833-13409879)
chr3 (80-131)||(48896075-48896127)
[»] chr4 (9 HSPs)
chr4 (5-233)||(11361595-11361824)
chr4 (25-226)||(9409168-9409370)
chr4 (11-183)||(16675086-16675259)
chr4 (80-142)||(5358040-5358102)
chr4 (11-183)||(4697454-4697626)
chr4 (121-168)||(18558469-18558516)
chr4 (80-130)||(26654144-26654195)
chr4 (80-131)||(12424798-12424850)
chr4 (80-131)||(24924906-24924958)
[»] chr1 (15 HSPs)
chr1 (10-207)||(11013828-11014027)
chr1 (5-188)||(20146169-20146359)
chr1 (24-177)||(33103021-33103174)
chr1 (11-183)||(36571655-36571826)
chr1 (12-139)||(20150435-20150563)
chr1 (13-163)||(22607834-22607984)
chr1 (22-139)||(13202076-13202192)
chr1 (11-169)||(17615272-17615430)
chr1 (50-140)||(22620063-22620153)
chr1 (111-183)||(20866221-20866293)
chr1 (24-168)||(22533687-22533830)
chr1 (122-161)||(20886571-20886610)
chr1 (81-131)||(23455191-23455242)
chr1 (5-62)||(13232743-13232801)
chr1 (29-153)||(18780587-18780712)
[»] scaffold0264 (1 HSPs)
scaffold0264 (29-233)||(20793-20995)
[»] scaffold0555 (1 HSPs)
scaffold0555 (5-188)||(5660-5851)
[»] scaffold0002 (1 HSPs)
scaffold0002 (11-183)||(374125-374294)
[»] scaffold0337 (2 HSPs)
scaffold0337 (11-183)||(17221-17392)
scaffold0337 (68-183)||(4546-4661)
[»] scaffold0016 (1 HSPs)
scaffold0016 (11-111)||(12991-13092)
[»] scaffold0142 (1 HSPs)
scaffold0142 (5-152)||(20572-20719)
[»] scaffold1102 (1 HSPs)
scaffold1102 (11-135)||(871-996)
[»] scaffold0040 (1 HSPs)
scaffold0040 (80-183)||(26930-27031)
[»] scaffold0431 (1 HSPs)
scaffold0431 (80-131)||(5125-5177)
[»] scaffold0024 (1 HSPs)
scaffold0024 (80-131)||(38915-38967)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 26651069 - 26650839
Alignment:
Q  5 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgt 103  Q
    ||||||||||||||||||  ||||| |||||||||||||||||||| |||||||||||| || ||| ||||  |||||||||||||||||||||||||||    
T  26651069 aataagagttttccatagggaaaacaggtcgcaaatcacctatacagaattctaaaacactcgaagcaccgacgcgagagaaaagagtcataaagaatgt 26650970  T
Q  104 atgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgctttt 203  Q
    ||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| ||| ||| |||||||||||    
T  26650969 atgtaaaggatttgtcgaaccacctttatttataatccattgtattttacctttcctttaagtttctgcaatttaaacttcatgtctttactttgctttt 26650870  T
Q  204 aaaa-ccttttttctgtcgaaagacgccaca 233  Q
    |||| ||||||||||||||||||| ||||||    
T  26650869 aaaacccttttttctgtcgaaagaagccaca 26650839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 235
Target Start/End: Complemental strand, 18929445 - 18929235
Alignment:
Q  24 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 123  Q
    |||| |||| |||||||||||||| | |||||||||||| || ||||||||| | ||||||| | |||||||||||||||||||||| ||||| ||||||    
T  18929445 aaaatgggttgcaaatcacctatatagaattctaaaacactcgaagtaccggcgtgagagaagatagtcataaagaatgtatgtaaaagatttatcgaac 18929346  T
Q  124 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaa 223  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||    
T  18929345 cacctttatttttaatgcattgtattttacctttcctttaagtttctgcaatttaaacttaatgcctttactttgcttttaaaacct-ttttatgtcgaa 18929247  T
Q  224 agacgccacagg 235  Q
    | ||||||||||    
T  18929246 atacgccacagg 18929235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 24 - 227
Target Start/End: Complemental strand, 17402932 - 17402729
Alignment:
Q  24 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 123  Q
    ||||| |||||||||||||||||| | |||||||||||| || |||||||||  |||||||||| ||| ||||||||||||||||||||||||||  |||    
T  17402932 aaaacaggtcgcaaatcacctatatagaattctaaaacactctaagtaccggcacgagagaaaaaagttataaagaatgtatgtaaaggatttgtataac 17402833  T
Q  124 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaa 223  Q
    |||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||| ||| |||    
T  17402832 cacctttatttttaatgcattgtattttatatttcctttaagtttctgcaatttaaacttattgcctttactttgcttttaaaaccttttttttgttgaa 17402733  T
Q  224 agac 227  Q
    ||||    
T  17402732 agac 17402729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 214
Target Start/End: Original strand, 25520391 - 25520601
Alignment:
Q  5 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgt 103  Q
    ||||| ||||||||||||  ||||||||| |||||||||||||||| |||| ||||||| || ||||  ||| ||||||||||||||||||| | |||||    
T  25520391 aataatagttttccatagggaaaacgggttgcaaatcacctatacagaattataaaacactcgaagtgacggcgcgagagaaaagagtcatacataatgt 25520490  T
Q  104 atgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgctttt 203  Q
    ||||||||| ||||||||||| ||||||||||||||||| |||| |||| |||| |||||  |||||||||||| ||||||||||||| |||||||||||    
T  25520491 atgtaaaggttttgtcgaacctcctttatttttaatgcaatgtagtttatcttttctttaactttctgcaattttaacttaatgcctttactttgctttt 25520590  T
Q  204 aaaaccttttt 214  Q
    |||||||||||    
T  25520591 aaaaccttttt 25520601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 31404046 - 31404205
Alignment:
Q  24 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgt-aaaggatttgtcgaa 122  Q
    |||| |||||||||||||| |||  ||| |||||||||| || ||||||||| ||||||||||||||| ||| ||||||||||| ||| |||||||||||    
T  31404046 aaaatgggtcgcaaatcacttattgaaa-ttctaaaacactcgaagtaccggcgcgagagaaaagagttatacagaatgtatgtaaaatgatttgtcgaa 31404144  T
Q  123 ccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 183  Q
    ||||||||  |||||||||| || | ||||||||| ||||| ||||||||| |||||||||    
T  31404145 ccaccttttattttaatgcaatgcaatttaccttttctttaagtttctgcattttaaactt 31404205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 24544042 - 24543870
Alignment:
Q  11 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    |||||||||||| ||||||||||| |||||||| |||| ||| ||  | |||| || ||||| ||| ||||||||||||| | ||| | ||| |||||||    
T  24544042 agttttccataggaaaaacgggtcacaaatcacttatagaaatttg-acaacactcgaagtatcggcgcgagagaaaagatttatacataatatatgtaa 24543944  T
Q  110 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 183  Q
    ||||||| | ||||||||||||||||||||||| || | ||||  ||||||  | |||| |||||||| |||||    
T  24543943 aggatttctggaaccacctttatttttaatgcaatgcaatttatttttcctacaagtttttgcaattttaactt 24543870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 19879033 - 19878981
Alignment:
Q  11 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaaca 62  Q
    |||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  19879033 agttttccataggaaaaacgggtcgcaaatcacctatacagaattctaaaaca 19878981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 24 - 150
Target Start/End: Original strand, 20478255 - 20478379
Alignment:
Q  24 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaa 122  Q
    |||| |||||||||||||  |||||| ||||||| |||| ||||| |||||| ||||| |||| |||| ||| ||||||||||||||  ||||||| | |    
T  20478255 aaaatgggtcgcaaatca--tatacataattctacaacactcaaactaccggcgcgagggaaacgagttatacagaatgtatgtaaactgatttgtag-a 20478351  T
Q  123 ccacctttatttttaatgcattgtattt 150  Q
    ||||||||| |||||||| |||| ||||    
T  20478352 ccacctttaattttaatgaattgcattt 20478379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 135
Target Start/End: Original strand, 29891263 - 29891376
Alignment:
Q  22 gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgta-aaggatttgtcg 120  Q
    ||||||||||||||| ||||| |||| ||| || ||||||| |||||||| ||| ||||||||||||| | ||| | |||||||||| |  ||| |||||    
T  29891263 gaaaaacgggtcgcagatcacttatagaaa-ttataaaacactcaaagtatcggcgcgagagaaaagatttatacaaaatgtatgtacactgatatgtcg 29891361  T
Q  121 aaccacctttatttt 135  Q
    |||||| ||||||||    
T  29891362 aaccacatttatttt 29891376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 28760672 - 28760724
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 131  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  28760672 agagaaaagagtcatatagaatgtatgtaaactgatttgtcgaaccaccttta 28760724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 17162015 - 17162101
Alignment:
Q  82 agaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgttt 168  Q
    |||||||| ||||| |||||||||||||   |||||||||| ||||||||| | |||||||| || | ||||||||||||||| ||||    
T  17162015 agaaaagaatcatacagaatgtatgtaatctgatttgtcgagccaccttta-tattaatgcaatgcaatttacctttcctttaagttt 17162101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 17636791 - 17636690
Alignment:
Q  82 agaaaagagtcataaagaatgtatgtaaag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaa 180  Q
    |||||||||||||| | |||||||||||   ||||||||||||||||||||   ||||||||  | | ||||||||| ||||| ||||||||  ||||||    
T  17636791 agaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccaccttta-cattaatgcaaggcaatttaccttttctttaagtttctgcgttttaaa 17636693  T
Q  181 ctt 183  Q
    |||    
T  17636692 ctt 17636690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 15438056 - 15438104
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacc 127  Q
    |||||||||||||||| |||||||||||||   ||||||||||||||||    
T  15438056 agagaaaagagtcatacagaatgtatgtaatttgatttgtcgaaccacc 15438104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 149; Significance: 9e-79; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 19217982 - 19218177
Alignment:
Q  12 gttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 110  Q
    |||||||||||  |||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||    
T  19217982 gttttccatagggaaaacgggtcgcaaatcacctatacaaa-ttctaaaacactcaaagtaccggcgcgagagaaaagagccataaagaatgtatgtaaa 19218080  T
Q  111 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||    
T  19218081 ggatttgtcgaaccacctttatttttaatgcattgtattttacatttcctttaagtttctacaatttaaacttaatgcctttactttgcttttaaaa 19218177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 27 - 193
Target Start/End: Complemental strand, 20060975 - 20060802
Alignment:
Q  27 acgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccac 126  Q
    |||||| ||||||| |||||||| ||||||||||||||  || |||||| || |||||||||||||||||| ||||||||||||||||||||||||||||    
T  20060975 acgggttgcaaatcgcctatacagaattctaaaacatttgaactaccggcgcaagagaaaagagtcataaacaatgtatgtaaaggatttgtcgaaccac 20060876  T
Q  127 ctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 193  Q
    ||||||||||||||||       |||||||||  |||| ||||| |||||||||||||||||||||||| ||||    
T  20060875 ctttatttttaatgcacttgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20060802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 5 - 193
Target Start/End: Original strand, 20064457 - 20064653
Alignment:
Q  5 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgt 103  Q
    ||||| ||||||||||||  ||||||||||||||||| |||||||| |||||||||||| | |||||||||| || |||||||||||| ||||| |||||    
T  20064457 aataatagttttccatagggaaaacgggtcgcaaatcgcctatacagaattctaaaacactgaaagtaccggtgcaagagaaaagagttataaaaaatgt 20064556  T
Q  104 atgtaaaggatttgtcgaaccacctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 193  Q
    ||||||| ||||||| |||||||||||||||||||||||       || ||||||  |||| ||||| |||||||||||||||||||||||| ||||    
T  20064557 atgtaaatgatttgttgaaccacctttatttttaatgcacttgcatttatattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 20064653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 193
Target Start/End: Original strand, 20058658 - 20058824
Alignment:
Q  34 gcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatt 133  Q
    ||||||| ||||| |||||||||||||||||||||||||  | || |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20058658 gcaaatcgcctatgcaaaattctaaaacattcaaagtactagcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaaccacctttatt 20058757  T
Q  134 tttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 193  Q
    |||||||||       |||||||||   |||  |||| |||||||||||||||||||||||| ||||    
T  20058758 tttaatgcaattgcatttgtattttttattttatttaagtttctgcaatttaaacttaatgcattaa 20058824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 23210122 - 23210240
Alignment:
Q  24 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 123  Q
    ||||| |||||||||||   |||||| |||||||||||| || ||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||    
T  23210122 aaaacaggtcgcaaatcgtatatacataattctaaaacactcgaagtaccggcgcaagagaaaagagtcttaaagaatgtatgtaaaggatttgtcgaac 23210221  T
Q  124 cacctttatttttaatgca 142  Q
    ||| |||||||||||||||    
T  23210222 cacttttatttttaatgca 23210240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 20713366 - 20713228
Alignment:
Q  5 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgt 103  Q
    ||||| ||||||||||||  ||||||||||||||||| | |||||| |||||||||||| || || |||||  || ||||||||||||||||||||||||    
T  20713366 aataatagttttccatagggaaaacgggtcgcaaatcgcatatacagaattctaaaacactcgaaataccgatgcaagagaaaagagtcataaagaatgt 20713267  T
Q  104 atgtaaaggatttgtcgaaccacctttatttttaatgca 142  Q
    ||||||  ||||||| |||| ||||||||||||||||||    
T  20713266 atgtaacagatttgttgaacaacctttatttttaatgca 20713228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 142
Target Start/End: Complemental strand, 25951452 - 25951315
Alignment:
Q  5 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgt 103  Q
    ||||| ||||||||||||  ||||| ||||| ||||| | |||||| |||||||||||| ||||||||||| |  |||||||||||||||||||||||||    
T  25951452 aataatagttttccataggtaaaacaggtcgtaaatcgcttatacataattctaaaacactcaaagtaccg-acagagagaaaagagtcataaagaatgt 25951354  T
Q  104 atgtaaaggatttgtcgaaccacctttatttttaatgca 142  Q
    ||||||| ||||||||||||||  |||| | ||||||||    
T  25951353 atgtaaaagatttgtcgaaccaattttactcttaatgca 25951315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 111
Target Start/End: Original strand, 23379373 - 23379474
Alignment:
Q  11 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    ||||||||||||  ||||||||||||||||||||||| || |||||||||||| || ||||||  | |||||||||||||||||||||||||||||||||    
T  23379373 agttttccatagggaaaacgggtcgcaaatcacctatgcagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaa 23379472  T
Q  110 ag 111  Q
    ||    
T  23379473 ag 23379474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 183
Target Start/End: Original strand, 17167275 - 17167433
Alignment:
Q  24 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 123  Q
    |||||||||| |||||||| |||| ||| ||||| ||||    ||||||| | ||||||||||||||| ||| | |||||||||||||||||||||||||    
T  17167275 aaaacgggtcccaaatcacttatagaaa-ttctacaacaccagaagtaccagcgcgagagaaaagagtaatacaaaatgtatgtaaaggatttgtcgaac 17167373  T
Q  124 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 183  Q
    ||||||||||||||||| | || | |||| |||| ||||| |||||| || ||| |||||    
T  17167374 cacctttatttttaatgtaatgcaatttatcttttctttaagtttctacacttttaactt 17167433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 19924022 - 19924128
Alignment:
Q  77 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatt 176  Q
    ||||||||||||||| ||| ||||||||| |||| ||||||||||||||||||||||||||||||| |||| |||| |||| ||||| |||| |||| ||    
T  19924022 gcgagagaaaagagttatacagaatgtatataaaagatttgtcgaaccacctttatttttaatgcaatgtaatttatcttttctttaagtttatgcactt 19924121  T
Q  177 taaactt 183  Q
    | |||||    
T  19924122 ttaactt 19924128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 35 - 231
Target Start/End: Complemental strand, 23355777 - 23355581
Alignment:
Q  35 caaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttattt 134  Q
    ||||| ||||||||| ||||||| |||| |  ||||||||| |  || ||||| ||||||| | ||| |||||||| ||||| ||  |||||||||| ||    
T  23355777 caaattacctatacagaattctagaacacttgaagtaccggcgttagggaaaatagtcatacaaaatatatgtaaatgatttttcagaccacctttactt 23355678  T
Q  135 ttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacgcca 231  Q
    |||||||| || | |||| |||| ||||| ||||||||||||| ||||| || |||| ||||||| |||||||| ||||| |  ||||| |||||||    
T  23355677 ttaatgcaatgcaatttatcttttctttatgtttctgcaattttaactttattcctttactttgcatttaaaacgtttttcccatcgaatgacgcca 23355581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 183
Target Start/End: Complemental strand, 24878489 - 24878356
Alignment:
Q  50 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 149  Q
    |||||||| |||| || || |||||  ||||||||||||||| |||   ||| ||||||||||||||||| |||||||||||||||||||||| || | |    
T  24878489 aaattctacaacactcgaattaccgacgcgagagaaaagagttatacgtaatttatgtaaaggatttgtcaaaccacctttatttttaatgcaatgcaat 24878390  T
Q  150 ttacctttcctttacgtttctgcaatttaaactt 183  Q
    ||| |||| ||||| ||||||||  |||||||||    
T  24878389 ttatcttttctttaagtttctgcgttttaaactt 24878356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 19926749 - 19926855
Alignment:
Q  77 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatt 176  Q
    ||||||||||| ||| ||| ||||||||  |||| ||||||||||||||||||||||||||||||| || | |||| |||| ||||| |||| |||| ||    
T  19926749 gcgagagaaaatagttatacagaatgtaaataaaagatttgtcgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtttatgcactt 19926848  T
Q  177 taaactt 183  Q
    | |||||    
T  19926849 ttaactt 19926855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 17987619 - 17987487
Alignment:
Q  29 gggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggag-cgagagaaaagagtcataaagaatgtatgtaaag-gatttgtcgaaccac 126  Q
    |||||||||||||  |||||| |||||||||||| ||||| |||||  | | || |||| |||| ||| |||||||||||| |  ||||||| || ||||    
T  17987619 gggtcgcaaatca--tatacagaattctaaaacactcaaactaccgacgtctagggaaacgagttatacagaatgtatgtagactgatttgtaga-ccac 17987523  T
Q  127 ctttatttttaatgcattgtattttacctttccttt 162  Q
    |||||||||||||||| || ||||||||||||||||    
T  17987522 ctttatttttaatgcaatgcattttacctttccttt 17987487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 231
Target Start/End: Complemental strand, 24878319 - 24878288
Alignment:
Q  200 ttttaaaaccttttttctgtcgaaagacgcca 231  Q
    ||||||||||||||||||||||||||||||||    
T  24878319 ttttaaaaccttttttctgtcgaaagacgcca 24878288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 31533052 - 31533102
Alignment:
Q  82 agaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 131  Q
    |||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  31533052 agaaaagagtcatagagaatgtatgtaatctgatttgtcgaaccaccttta 31533102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 25951292 - 25951260
Alignment:
Q  155 tttcctttacgtttctgcaatttaaacttaatg 187  Q
    ||||||||| |||||||||||||||||||||||    
T  25951292 tttcctttaagtttctgcaatttaaacttaatg 25951260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 24 - 233
Target Start/End: Complemental strand, 20146021 - 20145813
Alignment:
Q  24 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 123  Q
    |||||||||||||||||||| || || |||||||||||| || |||||| || ||||||||| |||||||||||||||||||||||||||||||||||||    
T  20146021 aaaacgggtcgcaaatcacccatgcataattctaaaacactcgaagtactggcgcgagagaagagagtcataaagaatgtatgtaaaggatttgtcgaac 20145922  T
Q  124 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaa 223  Q
    |||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| ||||||| || |||||||||||||||||| ||||||||||||    
T  20145921 cacctttatttttaatgcattgtattctacctttccttgaagtttctgcaatttaaagttaatgcatttactttgcttttaaaacct-ttttctgtcgaa 20145823  T
Q  224 agacgccaca 233  Q
    ||||||||||    
T  20145822 agacgccaca 20145813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 2547131 - 2546914
Alignment:
Q  11 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    ||||||||||||  |||||||||||||||||||||||| | |||||||||||| || ||||||||   |||||||||| |||||||||||||| ||||||    
T  2547131 agttttccatagggaaaacgggtcgcaaatcacctatatagaattctaaaacactcgaagtaccgacccgagagaaaaaagtcataaagaatggatgtaa 2547032  T
Q  110 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacc 209  Q
    |||||||| |  ||||||||||||||     ||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||    
T  2547031 aggatttggcagaccacctttatttta----cattgtattttacctttcctttaagtttctgcaatttaaacttaatgccttttctttgcttttaaaacc 2546936  T
Q  210 ttttttctgtcgaaagacgcca 231  Q
    ||||||| ||||||||||||||    
T  2546935 ttttttccgtcgaaagacgcca 2546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 14987066 - 14987278
Alignment:
Q  5 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgt 103  Q
    ||||||||||||||||||  |||| |||||||| |||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||||    
T  14987066 aataagagttttccatagggaaaatgggtcgcatatcacctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgt 14987165  T
Q  104 atgtaaaggatttgtcgaaccacctttatttttaatgcattgta-ttttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttt 202  Q
    ||||||| ||||| |||||||||||||||||||||||   |||| ||||| |||| ||||| |||||| |||||||||||||||||||| ||||| ||||    
T  14987166 atgtaaaagatttttcgaaccacctttatttttaatgagatgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttt 14987265  T
Q  203 taaaacctttttt 215  Q
    |||| ||||||||    
T  14987266 taaaccctttttt 14987278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 5 - 215
Target Start/End: Original strand, 15416677 - 15416889
Alignment:
Q  5 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgt 103  Q
    ||||||||||||||||||  |||| |||||||| |||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||||||||||    
T  15416677 aataagagttttccatagggaaaatgggtcgcatatcacctatacataattctaaaacactcgaagtaccggtgcgagagaaaagagtcataaagaatgt 15416776  T
Q  104 atgtaaaggatttgtcgaaccacctttatttttaatgcattgta-ttttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttt 202  Q
    ||||||| ||||| |||||||||||||||||||||||   |||| ||||| |||| ||||| |||||| |||||||||||||||||||| ||||| ||||    
T  15416777 atgtaaaagatttttcgaaccacctttatttttaatgagatgtatttttatcttttctttaagtttctccaatttaaacttaatgcctttacttttcttt 15416876  T
Q  203 taaaacctttttt 215  Q
    |||| ||||||||    
T  15416877 taaaccctttttt 15416889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 17600754 - 17600539
Alignment:
Q  11 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    ||||||||||| | |||||| ||||||||||||||||||| |||||||||||| || |||||||||  |||||| |||||||||||||||||||||||||    
T  17600754 agttttccataaggaaaacgtgtcgcaaatcacctatacagaattctaaaacactcgaagtaccggcacgagaggaaagagtcataaagaatgtatgtaa 17600655  T
Q  110 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacc 209  Q
    |||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| |||| || ||||||||| |  | |||| ||||| |||||||||||    
T  17600654 aggatttgtcgaacaacctttatttttaatgctttgtatgttatctttcctttaagtttatggaatttaaacct--ttcctttacttttcttttaaaacc 17600557  T
Q  210 ttttttctgtcgaaagac 227  Q
    |||||| |||||||||||    
T  17600556 ttttttttgtcgaaagac 17600539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 3743608 - 3743380
Alignment:
Q  11 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgta 108  Q
    ||||||||| ||| |||||||||||||||||||||||||| |||||||||| || || ||||||||| ||   |||||||||||||||| |||||||  |    
T  3743608 agttttccaaagagaaaacgggtcgcaaatcacctatacataattctaaaaacactcgaagtaccggtgctgaagaaaagagtcataaaaaatgtataca 3743509  T
Q  109 aaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattt-aaactt-aatgccttaactttgctttt--a 204  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||  ||||||| | | ||||||||||| |||||| |||||||| ||||| || ||  |    
T  3743508 aaggatttgtcgaaccacctttatttttaatgccttgtactttatttttccttcaagattctgcaatttcaaacttgaatgcctttactttactgttaaa 3743409  T
Q  205 aaaccttttttctgtcgaaagacgccaca 233  Q
    ||||| ||||| ||||||||||| |||||    
T  3743408 aaaccctttttttgtcgaaagacaccaca 3743380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 24832577 - 24832402
Alignment:
Q  24 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 123  Q
    ||||||||||||||||| |||||||| |||| ||||||| || ||||| ||| || |||||||||||||||||||||||||||||||| |||||||||||    
T  24832577 aaaacgggtcgcaaatcgcctatacagaatt-taaaacactcgaagtatcggcgcaagagaaaagagtcataaagaatgtatgtaaagaatttgtcgaac 24832479  T
Q  124 cacctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaa 193  Q
    |||| ||||||||||||||       |||||||||  |||| ||||| |||||||||||||||||||||||| ||||    
T  24832478 caccattatttttaatgcacttgcatttgtattttttcttttctttaagtttctgcaatttaaacttaatgcattaa 24832402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 186
Target Start/End: Original strand, 4173452 - 4173615
Alignment:
Q  24 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 123  Q
    ||||||||||||||||| |||||| | |||||||||||| || ||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  4173452 aaaacgggtcgcaaatcgcctatagagaattctaaaacactcgaagtatcgacgcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 4173551  T
Q  124 cacctttatttttaatgca-ttgtattttacctttcctttacgtttctgcaatttaaacttaat 186  Q
     |  ||||| ||||||||| ||| ||||    ||| ||||| ||||||||||||||||||||||    
T  4173552 tagttttatctttaatgcacttgcatttgtatttttctttaagtttctgcaatttaaacttaat 4173615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 10649240 - 10649344
Alignment:
Q  31 gtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccacctt 129  Q
    |||||||||||| |||| ||| ||| |||||| || |||||||||  |||||||||||||| ||||||||||||||||||  |||||  | |||||||||    
T  10649240 gtcgcaaatcacttatagaaatttc-aaaacactcgaagtaccggcacgagagaaaagagttataaagaatgtatgtaaactgattttccaaaccacctt 10649338  T
Q  130 tatttt 135  Q
    ||||||    
T  10649339 tatttt 10649344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 182
Target Start/End: Complemental strand, 18046501 - 18046371
Alignment:
Q  50 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtat 148  Q
    ||||||||||||| |  ||||||||| |||||| |||||   |||| | ||||| ||||| | |||||||||||||||||||| |||||||||| || |     
T  18046501 aaattctaaaacaattgaagtaccggcgcgagaaaaaagg--catacataatgtgtgtaatatgatttgtcgaaccaccttta-ttttaatgcaatgcaa 18046405  T
Q  149 tttacctttcctttacgtttctgcaatttaaact 182  Q
    ||||||||| ||||| |||| |||  ||||||||    
T  18046404 tttaccttttctttaagtttttgcgttttaaact 18046371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 135
Target Start/End: Original strand, 9022558 - 9022614
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttt 135  Q
    |||| ||||||||||| |||||||||||||   ||||| ||||||||||||||||||    
T  9022558 agagtaaagagtcatacagaatgtatgtaatctgatttctcgaaccacctttatttt 9022614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 22397548 - 22397777
Alignment:
Q  5 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaa-cattcaaagtaccggagcgagagaaaagagtcataaagaatg 102  Q
    |||||||||||||| |||  |||||||||||||||||||||||||| |||||||||| || || ||||||||| ||||||||||| ||||||||||||||    
T  22397548 aataagagttttccgtagggaaaacgggtcgcaaatcacctatacagaattctaaaaacactcgaagtaccggcgcgagagaaaatagtcataaagaatg 22397647  T
Q  103 tatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcc-tttacgtttctgcaatttaaacttaatgccttaactttgctt 201  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    ||||| |||    
T  22397648 tatgtaaaggatttgtcgaacaacctttatttttaatgcattgtattttacctttccttttaagtttctgcaatttaaacttaatgc--agacttttctt 22397745  T
Q  202 ttaaaaccttttttctgtcgaaagacgccaca 233  Q
    |||||||||||||| |||||||||||||||||    
T  22397746 ttaaaaccttttttttgtcgaaagacgccaca 22397777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 24 - 224
Target Start/End: Complemental strand, 17524998 - 17524797
Alignment:
Q  24 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 123  Q
    ||||| |||||||||||||||||||| |||||||||||| || |||| | || | ||||||||||||||||||||||||||| ||||||| |||||| ||    
T  17524998 aaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtgctggcgtgagagaaaagagtcataaagaatgtatttaaagga-ttgtcggac 17524900  T
Q  124 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaa-tttaaacttaatgccttaactttgctttt-aaaaccttttttctgtcg 221  Q
     |||||||||||||||||||| || ||||  ||| ||||| |||||| ||| |||||| ||||| |||| |||||| |||| |||||||||||| | |||    
T  17524899 aacctttatttttaatgcattataatttattttttctttaagtttctacaattttaaaattaattcctttactttgtttttaaaaaccttttttttatcg 17524800  T
Q  222 aaa 224  Q
    |||    
T  17524799 aaa 17524797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 16177436 - 16177304
Alignment:
Q  11 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    ||||||||||| | |||||||||||||||| |||||||||||||||||||||| || |||||||      ||||||||||||||||||||||||||||||    
T  16177436 agttttccatatggaaaacgggtcgcaaataacctatacaaaattctaaaacactcgaagtaccaacataagagaaaagagtcataaagaatgtatgtaa 16177337  T
Q  110 aggatttgtcgaaccacctttatttttaatgca 142  Q
    ||||||| ||||||||| |||||||||||||||    
T  16177336 aggatttttcgaaccacatttatttttaatgca 16177304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 1177214 - 1177349
Alignment:
Q  11 agttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaaga----atgtatg 106  Q
    |||||| ||||| ||||| || ||||||||| ||||||| |||||||||||| || ||||||  | |||||||||||||||||||||||    |||||||    
T  1177214 agttttgcataggaaaacaggacgcaaatcatctatacagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatacatgtatg 1177313  T
Q  107 taaaggatttgtcgaaccacctttatttttaatgca 142  Q
    ||||||||||||||||||||||||||||||||||||    
T  1177314 taaaggatttgtcgaaccacctttatttttaatgca 1177349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 138
Target Start/End: Complemental strand, 15830140 - 15830026
Alignment:
Q  24 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 123  Q
    ||||||||||||||||| |||||||| |||||||||||| |||||||| | | | ||||||||||||||||||| |||||||||||| |||||||||||     
T  15830140 aaaacgggtcgcaaatcgcctatacagaattctaaaacactcaaagtatcagtgtgagagaaaagagtcataaataatgtatgtaaaagatttgtcgaat 15830041  T
Q  124 cacctttatttttaa 138  Q
    ||| |||||||||||    
T  15830040 cacttttatttttaa 15830026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 50 - 183
Target Start/End: Complemental strand, 18713842 - 18713709
Alignment:
Q  50 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 149  Q
    |||||||| |||| |||||||||||   |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| || | |    
T  18713842 aaattctataacactcaaagtaccgtcacgagagaaaagagttatacagaatgtatgtaaaggatttgtcgaaccacctttatttttaaagcaatgcaat 18713743  T
Q  150 ttacctttcctttacgtttctgcaatttaaactt 183  Q
    ||| | || ||||| ||||||||| ||| |||||    
T  18713742 ttatcatttctttaagtttctgcacttttaactt 18713709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 50 - 183
Target Start/End: Original strand, 17947890 - 17948023
Alignment:
Q  50 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 149  Q
    |||||||| ||||||| ||||| ||| || |||| ||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| || || | |    
T  17947890 aaattctacaacattcgaagtaacggcgcaagaggaaagagttatataaaatgtatgtaaaggatttgtcgaaccacctttatttttaattcaatgcaat 17947989  T
Q  150 ttacctttcctttacgtttctgcaatttaaactt 183  Q
    ||| |||||||||| |||| |||| ||| |||||    
T  17947990 ttatctttcctttaagtttatgcatttttaactt 17948023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 14762985 - 14763090
Alignment:
Q  78 cgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattt 177  Q
    |||||||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||| || | |||| |||| ||||| ||||||||| |||    
T  14762985 cgagagaaaagagttatacagaatgtatgtaaaggagttctcgaaccacctttatttttaatgcaatgcaatttatcttttctttaagtttctgcacttt 14763084  T
Q  178 aaactt 183  Q
     |||||    
T  14763085 taactt 14763090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 80 - 181
Target Start/End: Complemental strand, 28712461 - 28712360
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattta 178  Q
    |||||||||||||||| | |||||||||||   ||||||||||||||||||||   |||||||| |||| ||||||||| ||||| ||||||||  ||||    
T  28712461 agagaaaagagtcatatataatgtatgtaatctgatttgtcgaaccaccttta-cattaatgcaatgtaatttaccttttctttaagtttctgcgtttta 28712363  T
Q  179 aac 181  Q
    |||    
T  28712362 aac 28712360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 13002854 - 13002906
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 131  Q
    |||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  13002854 agagaaaagagtcatacagaatgtatgtaaactgatttgtcgaaccaccttta 13002906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 193
Target Start/End: Original strand, 31126249 - 31126351
Alignment:
Q  99 aatgtatgtaaaggatttgtcgaaccacctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaattt-aaacttaatgcct 190  Q
    ||||||||||||||||||| |||||||||||||||| |||||||       |||||||||  |||| ||||  ||||||||||||| ||||||||||| |    
T  31126249 aatgtatgtaaaggatttgccgaaccacctttatttataatgcacttgcatttgtattttttcttttctttgagtttctgcaatttaaaacttaatgcat 31126348  T
Q  191 taa 193  Q
    |||    
T  31126349 taa 31126351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 25945916 - 25945846
Alignment:
Q  98 gaatgtatgtaaag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgttt 168  Q
    |||||||||||||  ||||||| || |||||||||||||||||||| || ||||||||| ||||||| ||||    
T  25945916 gaatgtatgtaaactgatttgtaga-ccacctttatttttaatgcaatgcattttacctctcctttaagttt 25945846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 24154179 - 24154229
Alignment:
Q  82 agaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 131  Q
    |||||||||||||| | ||||||||||||  ||||||||||||||||||||    
T  24154179 agaaaagagtcatacaaaatgtatgtaaactgatttgtcgaaccaccttta 24154229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 10163272 - 10163317
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaacc 124  Q
    |||||||||||||||| ||||||||||||||  |||||||||||||    
T  10163272 agagaaaagagtcatatagaatgtatgtaaactgatttgtcgaacc 10163317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 16143240 - 16143188
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 131  Q
    |||||||||||| ||| |||||||||||||   ||||||||||||||||||||    
T  16143240 agagaaaagagttatatagaatgtatgtaatctgatttgtcgaaccaccttta 16143188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 16793368 - 16793265
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattta 178  Q
    |||||||||||||||| |  ||||||||||   ||||||||||||||  |||| |||||||||| || | ||||||||| | ||| ||||||||| |||     
T  16793368 agagaaaagagtcatacaatatgtatgtaatctgatttgtcgaaccattttta-ttttaatgcaatgcaatttaccttttccttaagtttctgcattttt 16793270  T
Q  179 aactt 183  Q
    |||||    
T  16793269 aactt 16793265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 144; Significance: 8e-76; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 28371257 - 28371034
Alignment:
Q  11 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    ||||||||||||  |||| ||||||||||||||||||| |||||||||||||| || ||||||| | | ||| ||||| |||||||||||||||||||||    
T  28371257 agttttccatagggaaaatgggtcgcaaatcacctatataaaattctaaaacactcgaagtaccagtgtgagtgaaaaaagtcataaagaatgtatgtaa 28371158  T
Q  110 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacc 209  Q
    || |||||||||||| ||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||| || |||||||||||||||||    
T  28371157 agtatttgtcgaacctcctttatttttaatgcattgtattttactgttcctttaagtttctgcaatttaaacttaatgcatttactttgcttttaaaacc 28371058  T
Q  210 ttttttctgtcgaaagacgccaca 233  Q
     |||||||||||||||||||||||    
T  28371057 atttttctgtcgaaagacgccaca 28371034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 228
Target Start/End: Complemental strand, 9218298 - 9218079
Alignment:
Q  12 gttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 110  Q
    |||||||||||  ||||||||||||||||||| |||||| |||||||||||| || ||||||||  ||||||||||||  ||||| ||||||||||||||    
T  9218298 gttttccatagggaaaacgggtcgcaaatcacatatacagaattctaaaacactcgaagtaccgacgcgagagaaaag--tcatacagaatgtatgtaaa 9218201  T
Q  111 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaacc- 209  Q
     |||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||  || ||||||||||||||| |     
T  9218200 tgatttgtcgaaccatctttatttttaatgcattgtattttatctttcctttaagtttctgcaatttaaacttaatgtttttactttgcttttaaaaacc 9218101  T
Q  210 ---ttttttctgtcgaaagacg 228  Q
       |||||||||||||||||||    
T  9218100 tttttttttctgtcgaaagacg 9218079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 23540219 - 23540351
Alignment:
Q  11 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    ||||||||||||  ||||||||| |||||||||||||||| |||||||||| | ||||||||||||  | |||||||||| |||||||||||||||||||    
T  23540219 agttttccatagggaaaacgggttgcaaatcacctatacagaattctaaaatactcaaagtaccggctcaagagaaaagaatcataaagaatgtatgtaa 23540318  T
Q  110 aggatttgtcgaaccacctttatttttaatgca 142  Q
    | ||||| |||||||||||||||||||||||||    
T  23540319 aagatttttcgaaccacctttatttttaatgca 23540351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 104 - 230
Target Start/End: Complemental strand, 10661095 - 10660970
Alignment:
Q  104 atgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgctttt 203  Q
    |||||||||||||||||||||||||||||||| |||||||||  ||| ||||||||||||  || ||||||||||||||||||| ||| |||||||||||    
T  10661095 atgtaaaggatttgtcgaaccacctttattttgaatgcattgcgtttcacctttcctttaacttcctgcaatttaaacttaatgtctttactttgctttt 10660996  T
Q  204 aaaaccttttttctgtcgaaagacgcc 230  Q
    ||||||  ||||||||| |||||||||    
T  10660995 aaaacc-cttttctgtccaaagacgcc 10660970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 9286326 - 9286498
Alignment:
Q  11 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    ||||||||||||  ||||||||||||||||||| |||| ||| ||||| |||| || ||||||||| ||||||||||| ||| ||| | |||||||||||    
T  9286326 agttttccatagggaaaacgggtcgcaaatcacatatagaaa-ttctacaacactcgaagtaccggtgcgagagaaaatagttatacaaaatgtatgtaa 9286424  T
Q  110 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 183  Q
    |||||||||||||| |||||||||||||||||| || | |||| ||||  |||| ||||||||| ||| |||||    
T  9286425 aggatttgtcgaactacctttatttttaatgcaatgcaatttatcttttttttaagtttctgcacttttaactt 9286498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 145
Target Start/End: Complemental strand, 16600725 - 16600591
Alignment:
Q  11 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    |||||||||||| |||||||||| ||||||||| |||| ||| ||||| |||| || ||||||||| ||||||||| ||||| ||| | |||||| ||||    
T  16600725 agttttccataggaaaaacgggttgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgcgagagaatagagttatacataatgtacgtaa 16600627  T
Q  110 aggatttgtcgaaccacctttatttttaatgcattg 145  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16600626 aggatttgtcgaaccacatttatttttaatgcattg 16600591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 13110345 - 13110204
Alignment:
Q  30 ggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctt 129  Q
    ||||||||||||| |||| ||| ||||| |||| || ||||||||| | ||||||||||||| ||| | ||| |||||| | ||||||| ||||||||||    
T  13110345 ggtcgcaaatcacttatagaaa-ttctacaacactcgaagtaccggcgagagagaaaagagttatacaaaatatatgtatatgatttgttgaaccacctt 13110247  T
Q  130 tatttttaatgcattgtattttacctttcctttacgtttctgc 172  Q
    ||||||||||||| || | |||| |||| ||||| ||||||||    
T  13110246 tatttttaatgcaatgcaatttatcttttctttaagtttctgc 13110204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 10661856 - 10661748
Alignment:
Q  5 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacat-tcaaagtaccggagcgagagaaaagagtcataaagaatg 102  Q
    |||||||||||||||| |  ||||| |||||||||||||||||||| ||||||||||  | |||| ||||||| |||| | |||||||||||||||||||    
T  10661856 aataagagttttccattgggaaaacaggtcgcaaatcacctatacagaattctaaaaactctcaatgtaccggtgcgataaaaaagagtcataaagaatg 10661757  T
Q  103 tatgtaaag 111  Q
    |||||||||    
T  10661756 tatgtaaag 10661748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 26136195 - 26136242
Alignment:
Q  95 aaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 142  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  26136195 aaagaatgtatgtaaaggatttgtcggaccacctttatttttaatgca 26136242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 32 - 172
Target Start/End: Original strand, 18672125 - 18672261
Alignment:
Q  32 tcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccaccttta 131  Q
    ||||||||||| |||| ||| ||||| |||| || |||||| || | ||||||||||||| ||| | |||||||||||| ||||||| ||   |||||||    
T  18672125 tcgcaaatcacttatagaaa-ttctacaacactcgaagtactggcgagagagaaaagagttatacaaaatgtatgtaaatgatttgttga---accttta 18672220  T
Q  132 tttttaatgcattgtattttacctttcctttacgtttctgc 172  Q
    ||||||||||| |||| |||| |||| ||| | ||||||||    
T  18672221 tttttaatgcaatgtaatttatcttttcttgaagtttctgc 18672261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 22713661 - 22713767
Alignment:
Q  77 gcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatt 176  Q
    |||| |||||||| | ||| ||||| ||||||||| ||||||| |||||||||||||||||||||| ||||  ||| |||| ||||| |||||| || ||    
T  22713661 gcgatagaaaagatttatatagaatatatgtaaagaatttgtcaaaccacctttatttttaatgcaatgtaaattatcttttctttaagtttctacactt 22713760  T
Q  177 taaactt 183  Q
    | |||||    
T  22713761 ttaactt 22713767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 24577344 - 24577408
Alignment:
Q  11 agttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccgg 75  Q
    |||||| ||||| ||||||||| |||||||||||||||| |||||||||||| || |||||||||    
T  24577344 agtttttcataggaaaacgggtggcaaatcacctatacagaattctaaaacaatcgaagtaccgg 24577408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 25095187 - 25095052
Alignment:
Q  33 cgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgt-aaaggatttgtcgaaccaccttta 131  Q
    |||||||||| |||| ||| ||||||||||  | ||||||||| |||||| |||||||| ||| |  |||||||| |||  |||||||||||||||||||    
T  25095187 cgcaaatcacttatagaaa-ttctaaaacacccgaagtaccggcgcgagataaaagagttatacatgatgtatgtaaaattatttgtcgaaccaccttta 25095089  T
Q  132 tttttaatgcattgtattttacctttcctttacgttt 168  Q
    || | |||||| || | |||| |||| ||||| ||||    
T  25095088 ttataaatgcaatgcaatttatcttttctttaagttt 25095052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 27123582 - 27123752
Alignment:
Q  11 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    |||||||||||| ||||| | |||||||||||  |||| ||| ||||| |||| |||  ||||||  ||||||||||||||| ||| | |||||||||||    
T  27123582 agttttccataggaaaaatgagtcgcaaatcaattatagaaa-ttctacaacactca--gtaccgatgcgagagaaaagagttatacataatgtatgtaa 27123678  T
Q  110 -aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 183  Q
       ||||| |||||||||||||| |||||||||| || | |||| | |||||||| |||| |||  |||||||||    
T  27123679 tctgatttatcgaaccaccttta-ttttaatgcaatgcaatttatcattcctttaagtttatgcgttttaaactt 27123752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 15340931 - 15340983
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 131  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15340931 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15340983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 15429996 - 15430048
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 131  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15429996 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15430048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 15521300 - 15521352
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 131  Q
    |||||||||||||||| ||||||||||||||  |||||||| |||||||||||    
T  15521300 agagaaaagagtcatacagaatgtatgtaaactgatttgtcaaaccaccttta 15521352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 41652021 - 41652073
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 131  Q
    |||||||||||||||| |||||||||||||   ||||||||||||||||||||    
T  41652021 agagaaaagagtcatacagaatgtatgtaatttgatttgtcgaaccaccttta 41652073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 9006976 - 9006930
Alignment:
Q  122 accacctttatttttaatgcattgtattttacctttcctttacgttt 168  Q
    ||||||||||||||||||||| |  ||||||||||||||||| ||||    
T  9006976 accacctttatttttaatgcaatacattttacctttcctttaagttt 9006930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 23355539 - 23355487
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 131  Q
    |||||||||||||||| | |||||||||||   ||||||||||||||||||||    
T  23355539 agagaaaagagtcatacaaaatgtatgtaatctgatttgtcgaaccaccttta 23355487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 32352269 - 32352217
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 131  Q
    |||||||||||||||| | ||||||||||| | ||||||||||||||| ||||    
T  32352269 agagaaaagagtcatacaaaatgtatgtaatatgatttgtcgaaccactttta 32352217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 32368930 - 32368878
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 131  Q
    |||||||||||||||| | ||||||||||| | ||||||||||||||| ||||    
T  32368930 agagaaaagagtcatacaaaatgtatgtaatatgatttgtcgaaccactttta 32368878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 24699055 - 24699275
Alignment:
Q  5 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgt 103  Q
    ||||| ||||||||||||  ||||||||||||||||| |||||||| |||||||||||| || ||||||||| ||||||||||||| |||  ||||||||    
T  24699055 aataatagttttccatagggaaaacgggtcgcaaatcccctatacagaattctaaaacactcgaagtaccggcgcgagagaaaagaatca--aagaatgt 24699152  T
Q  104 atgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgctttt 203  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||| |    
T  24699153 atttaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttaagtttatgcaatttaaacttaatgcctttactttgcttat 24699252  T
Q  204 aaaaccttttttctgtcgaaaga 226  Q
     ||||| ||||||||||||||||    
T  24699253 gaaaccctttttctgtcgaaaga 24699275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 15687089 - 15686859
Alignment:
Q  5 aataagagttttccatagaa-aaacgggtcgcaaatcacctatacaaaattctaaaac-attcaaagtaccggagcgagagaaaagagtcataaagaatg 102  Q
    ||||||||||||||||||   ||||| ||||||||||||||||||  ||||||||||  | || ||||||||  |||||||||||||||| |||||||||    
T  15687089 aataagagttttccatagtggaaacgagtcgcaaatcacctatactgaattctaaaaatactcgaagtaccgacgcgagagaaaagagtcttaaagaatg 15686990  T
Q  103 tatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttt 202  Q
    |||| || |||||| | | |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||    
T  15686989 tatgaaatggatttttaggaccacctttatttttaatgcattgtattttacctttgctttaagtttctgcaatttaaacttaatgcctttactttgcttt 15686890  T
Q  203 taaaaccttttttctgtcgaaagacgccaca 233  Q
    ||||||| ||||||| |||||| ||||||||    
T  15686889 taaaaccctttttctatcgaaacacgccaca 15686859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 26011055 - 26010836
Alignment:
Q  11 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    ||||||||||||  ||||| |||||||||||||||||||  |||||||||||| || ||||||||| ||||||||| |||||||||||||||||||||||    
T  26011055 agttttccatagggaaaacaggtcgcaaatcacctataccgaattctaaaacactcgaagtaccggcgcgagagaatagagtcataaagaatgtatgtaa 26010956  T
Q  110 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaa---tttaaacttaatgccttaactttgcttttaaa 206  Q
    | ||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||    |||||||||||||||| ||||||||||||||    
T  26010955 atgatttgtcgaaccacctttatttttaaagcattgtattttatctttcctttaagtttctgcaagttattaaacttaatgcctttactttgcttttaaa 26010856  T
Q  207 accttttttctgtcgaaagac 227  Q
    | |  ||||||||||||||||    
T  26010855 aac-cttttctgtcgaaagac 26010836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 31 - 214
Target Start/End: Original strand, 13428733 - 13428914
Alignment:
Q  31 gtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccaccttt 130  Q
    ||||||||||||||||| ||  |||||||||| || ||||||||  | ||||||||||||| |||||||||||||||||||||||||| ||||||| |||    
T  13428733 gtcgcaaatcacctatataa--ttctaaaacactcgaagtaccgacgtgagagaaaagagtaataaagaatgtatgtaaaggatttgttgaaccacattt 13428830  T
Q  131 atttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttt 214  Q
    ||| |||||||||||||||||| ||||||||||  ||||||||||||||||||||||| || ||||||||||||||||| ||||    
T  13428831 attattaatgcattgtattttatctttcctttaaatttctgcaatttaaacttaatgcatttactttgcttttaaaaccctttt 13428914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 4769937 - 4769742
Alignment:
Q  11 agttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 110  Q
    ||||||||||||  ||| | ||| ||||||| ||||||| |||||||||||| || || |||| | || ||||||||||||||||||||||||||||||     
T  4769937 agttttccatagggaaaagcgtcccaaatcatctatacataattctaaaacactcgaaataccagcgcaagagaaaagagtcataaagaatgtatgtaac 4769838  T
Q  111 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaa 206  Q
    | |||| ||||||||||||||||| |||||||||||||||   |||||||||| |||| || ||||||||||||||||||| ||||||||||||||    
T  4769837 gaatttttcgaaccacctttatttctaatgcattgtatttattctttcctttaagtttatgaaatttaaacttaatgcctttactttgcttttaaa 4769742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 4765689 - 4765916
Alignment:
Q  11 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaat----gtat 105  Q
    |||||||||||| ||||| ||||||||||||||||||| |  ||||||||||| |  | ||||  | |||||||||||||||||||||||||    ||||    
T  4765689 agttttccataggaaaaatgggtcgcaaatcacctatatagtattctaaaacacttgatgtactagcgcgagagaaaagagtcataaagaattaatgtat 4765788  T
Q  106 gtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaa-tttaaacttaatgccttaactttgctttt- 203  Q
    ||||| |||||||||||||||||||| ||||||||||||||| ||||  ||||||||| |||| ||||| ||||||||||||||||| |||||||||||     
T  4765789 gtaaatgatttgtcgaaccacctttacttttaatgcattgtactttatttttcctttaagtttatgcaattttaaacttaatgcctttactttgctttta 4765888  T
Q  204 aaaaccttttttctgtcgaaagacgcca 231  Q
    |||||| ||||  |||||||||||||||    
T  4765889 aaaacccttttcatgtcgaaagacgcca 4765916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 4832516 - 4832740
Alignment:
Q  11 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    ||||||||||||  |||| || |||||||||||||||||| |||||||||||| || ||| |  || | ||||||||||||||| ||||||| ||| |||    
T  4832516 agttttccatagggaaaatggatcgcaaatcacctatacagaattctaaaacactcgaagcattggtgtgagagaaaagagtcacaaagaatatatttaa 4832615  T
Q  110 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaa-c 208  Q
    ||||| ||  | ||||||||||| |||||||||||||||||||  ||||||||  |||| |||||||||||||||||| ||| || ||||||| |||| |    
T  4832616 aggatctgctggaccacctttatatttaatgcattgtattttaattttcctttgagtttatgcaatttaaacttaatgtctttaccttgctttaaaaacc 4832715  T
Q  209 cttttttctgtcgaaagacgccaca 233  Q
    ||||||||| |||||||||| ||||    
T  4832716 cttttttctttcgaaagacgtcaca 4832740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 177
Target Start/End: Complemental strand, 23378631 - 23378488
Alignment:
Q  35 caaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttg-tcgaaccacctttatt 133  Q
    |||||||| ||||||||||||||||| | || ||||| ||| ||||||||||||||||||| | ||||||||||||||||||| | ||||||||||||||    
T  23378631 caaatcacttatacaaaattctaaaatactcgaagtatcggcgcgagagaaaagagtcatacataatgtatgtaaaggatttgtttgaaccacctttatt 23378532  T
Q  134 tttaatgcattgtattttacctttcctttacgtttctgcaattt 177  Q
    ||||||||| || | |||| |||||||||| |||||| ||||||    
T  23378531 tttaatgcaatgcaatttatctttcctttaagtttctacaattt 23378488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 142
Target Start/End: Complemental strand, 7148922 - 7148790
Alignment:
Q  11 agttttccatagaaaaac-gggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    |||||||||||| ||||| ||||| |||||  |||||||| |||||||||| | |  ||||||||  |||||||||||||||||||||||||||||||||    
T  7148922 agttttccataggaaaaccgggtcacaaattgcctatacagaattctaaaatagttgaagtaccgacgcgagagaaaagagtcataaagaatgtatgtaa 7148823  T
Q  110 aggatttgtcgaaccacctttatttttaatgca 142  Q
    ||||||||||||||||| |||| ||||||||||    
T  7148822 aggatttgtcgaaccacttttacttttaatgca 7148790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 9033475 - 9033622
Alignment:
Q  5 aataagagttttccatagaaaaacgggtcgcaaatcacctatacaaaattct-aaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgt 103  Q
    ||||| |||||||||||| ||||||||||||| ||| |||||||| |||| | |||||| || ||||| ||| || ||||||||  |||| |||||||||    
T  9033475 aataatagttttccataggaaaacgggtcgcatatcgcctatacagaattttcaaaacactcgaagtatcggcgcaagagaaaatggtcacaaagaatgt 9033574  T
Q  104 atgtaaaggatttgtcgaaccacctttatttttaatgca-ttgtattt 150  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||    
T  9033575 atgtaaaggatttgtcaaaccacctttatttttaatgcacttgtattt 9033622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 139
Target Start/End: Original strand, 29614594 - 29614724
Alignment:
Q  11 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaa-aacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgta 108  Q
    ||||||||||||  |||| |||||||||||| |||||| | |||||||| |||| || ||||||||   | |||||||||||||||||| ||||||||||    
T  29614594 agttttccatagggaaaatgggtcgcaaatcgcctatatataattctaagaacactcgaagtaccgacacaagagaaaagagtcataaataatgtatgta 29614693  T
Q  109 aaggatttgtcgaaccacctttatttttaat 139  Q
    |||||||||||||||||||||||||||||||    
T  29614694 aaggatttgtcgaaccacctttatttttaat 29614724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 16242937 - 16243069
Alignment:
Q  11 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    ||||||||||||  |||||| |||| ||||  ||| ||||  ||||||||||| || |||||||   |||||||||||||||||||||||||||||||||    
T  16242937 agttttccatagggaaaacgagtcgtaaatttcctctacaggattctaaaacactcgaagtaccaacgcgagagaaaagagtcataaagaatgtatgtaa 16243036  T
Q  110 aggatttgtcgaaccacctttatttttaatgca 142  Q
    || |||||||||||||| |||||||||||||||    
T  16243037 agcatttgtcgaaccacttttatttttaatgca 16243069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 173
Target Start/End: Original strand, 27304424 - 27304547
Alignment:
Q  50 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtatt 149  Q
    |||||||| |||| |||||||| |||  |||||||||||| | ||| | |||||||||| || ||||||| |||||| ||||||||||||||| || | |    
T  27304424 aaattctacaacactcaaagtatcggctcgagagaaaagaattatacaaaatgtatgtatagaatttgtcaaaccacttttatttttaatgcaatgcaat 27304523  T
Q  150 ttacctttcctttacgtttctgca 173  Q
    |||  ||| ||||| |||||||||    
T  27304524 ttatattttctttaagtttctgca 27304547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 8737234 - 8737308
Alignment:
Q  99 aatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgca 173  Q
    |||| ||||||||||||||| |||||||||||||||| |||||| || | |||| |||| |||||  ||||||||    
T  8737234 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 8737308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 9089472 - 9089546
Alignment:
Q  99 aatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgca 173  Q
    |||| ||||||||||||||| |||||||||||||||| |||||| || | |||| |||| |||||  ||||||||    
T  9089472 aatgcatgtaaaggatttgttgaaccacctttattttaaatgcaatgcaatttagcttttctttaactttctgca 9089546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 168
Target Start/End: Complemental strand, 13409879 - 13409833
Alignment:
Q  122 accacctttatttttaatgcattgtattttacctttcctttacgttt 168  Q
    ||||||||||||||||||||| || ||||||||||||||||| ||||    
T  13409879 accacctttatttttaatgcaatgcattttacctttcctttaagttt 13409833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 48896127 - 48896075
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 131  Q
    |||||||||||||||| | ||||||||||||  | ||||||||||||||||||    
T  48896127 agagaaaagagtcatacataatgtatgtaaactggtttgtcgaaccaccttta 48896075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 5 - 233
Target Start/End: Complemental strand, 11361824 - 11361595
Alignment:
Q  5 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgt 103  Q
    |||||||||||||| |||  ||||| ||||| | |||||||||||| |||||||||||| || |  |||||  ||||| ||||||||| | |||||||||    
T  11361824 aataagagttttccgtagggaaaacaggtcgtagatcacctatacagaattctaaaacactcgacttaccgacgcgagggaaaagagttacaaagaatgt 11361725  T
Q  104 atgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgctttt 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||| |||||||||||    
T  11361724 atgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcatttaaatttctgcaatttaaacttaatgcctttactttgctttt 11361625  T
Q  204 aaaaccttttttctgtcgaaagacgccaca 233  Q
    ||||| ||||| ||||| |||||| |||||    
T  11361624 aaaacttttttcctgtcaaaagacaccaca 11361595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 25 - 226
Target Start/End: Original strand, 9409168 - 9409370
Alignment:
Q  25 aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaacc 124  Q
    |||||||||||||||||| |||| | |||||||||||| || ||||||||| || |||||||| ||| ||||||||||||||||||||||||||||||||    
T  9409168 aaacgggtcgcaaatcacttatatagaattctaaaacactcgaagtaccggcgcaagagaaaaaagttataaagaatgtatgtaaaggatttgtcgaacc 9409267  T
Q  125 acctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgc-ttttaaaaccttttttctgtcgaa 223  Q
    |||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| | || ||||||| ||||||||||  |||||||||| |    
T  9409268 acctttatttttaatgcattgtattttatctttcctttaagtttatgcaatttaaacttaatacttttactttgctttttaaaaccccttttctgtcgta 9409367  T
Q  224 aga 226  Q
    |||    
T  9409368 aga 9409370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 16675259 - 16675086
Alignment:
Q  11 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    ||||||||||| |||||||||||| |||||| | |||| | | |||||||||| || ||||||||| ||||||||| ||||| ||| |||||||||||||    
T  16675259 agttttccatatgaaaaacgggtcacaaatcccttatagata-ttctaaaacactcgaagtaccggtgcgagagaagagagttatacagaatgtatgtaa 16675161  T
Q  110 ag-gatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 183  Q
    |  ||||||||||||||| |||||||| |||||| |  | ||||||||| ||||| ||||||||| |||||||||    
T  16675160 aatgatttgtcgaaccacttttattttaaatgcaatacaatttaccttttctttatgtttctgcattttaaactt 16675086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 142
Target Start/End: Complemental strand, 5358102 - 5358040
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgca 142  Q
    |||||||||||||||| | |||||||||||| |||||||||||| ||||||||||||||||||    
T  5358102 agagaaaagagtcatacataatgtatgtaaatgatttgtcgaactacctttatttttaatgca 5358040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 4697626 - 4697454
Alignment:
Q  11 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    ||||||||||| | |||| | |||||||||||| |||| ||| |||||||||| |||||| ||||| | ||||||| | ||| ||| | |||||||||||    
T  4697626 agttttccatatggaaaatgagtcgcaaatcacttatagaaa-ttctaaaacactcaaagcaccggcgtgagagaacaaagttatacaaaatgtatgtaa 4697528  T
Q  110 -aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 183  Q
       |||| |||||||||||||||  ||||||||| |  | ||||||||| ||||| |||| |||  |||||||||    
T  4697527 tctgattcgtcgaaccaccttta-ctttaatgcaatacaatttaccttttctttaagtttatgcgttttaaactt 4697454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 121 - 168
Target Start/End: Original strand, 18558469 - 18558516
Alignment:
Q  121 aaccacctttatttttaatgcattgtattttacctttcctttacgttt 168  Q
    |||||||||||||||||||||| || ||||||| ||||||||| ||||    
T  18558469 aaccacctttatttttaatgcaatgcattttacatttcctttaagttt 18558516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 26654144 - 26654195
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttt 130  Q
    |||||||||||||||| | ||||||||||| | |||||||||||||||||||    
T  26654144 agagaaaagagtcatacataatgtatgtaatatgatttgtcgaaccaccttt 26654195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 12424850 - 12424798
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 131  Q
    |||||||||||||||| | ||||||||||||   |||||||||||||||||||    
T  12424850 agagaaaagagtcatacaaaatgtatgtaaaccaatttgtcgaaccaccttta 12424798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 131
Target Start/End: Complemental strand, 24924958 - 24924906
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 131  Q
    |||||||||||||||| | |||||||||||   ||||||||||||||||||||    
T  24924958 agagaaaagagtcatacataatgtatgtaatctgatttgtcgaaccaccttta 24924906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 11013828 - 11014027
Alignment:
Q  10 gagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgta 108  Q
    |||||||||||||  |||| |||| ||||||||||||||||||||| ||||||| || || |||| |   ||||||||||||||||||||||| ||||||    
T  11013828 gagttttccataggtaaaatgggttgcaaatcacctatacaaaattttaaaacactcgaaataccagcttgagagaaaagagtcataaagaatatatgta 11013927  T
Q  109 aaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaa-tttaaacttaatgccttaactttgcttttaaaa 207  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||  ||||||||| ||||| | || ||||||||||||||||| |||||||||||||||    
T  11013928 aaggatttgtcgagccacctttatttttaatgcattgtactttatttttcctttaagtttcaggaattttaaacttaatgcctttactttgcttttaaaa 11014027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 5 - 188
Target Start/End: Complemental strand, 20146359 - 20146169
Alignment:
Q  5 aataagagttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgt 103  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||    
T  20146359 aataagagttttccatatggaaaatgggtcgcaaatcacctatacaaaattctaaaacactcaaagtaccggtgcgagagaaaagagtcataaag-atgt 20146261  T
Q  104 atgtaaaggatttgtcgaaccacctttatttttaatgca-------ttgtattttacctttcctttacgtttctgcaatttaaacttaatgc 188  Q
    ||||||||||||| | | |||| ||||||||||||||||       || |||||| ||||| ||||| ||||||||||||||||||||||||    
T  20146260 atgtaaaggattttttggaccatctttatttttaatgcacttgcatttttatttttccttttctttaagtttctgcaatttaaacttaatgc 20146169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 33103174 - 33103021
Alignment:
Q  24 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaac 123  Q
    ||||| |||||||||||||||||||| |||||||||||| || ||||||||  | ||||||||||||||||| |||||||||||||||||||||||||||    
T  33103174 aaaacaggtcgcaaatcacctatacataattctaaaacactcgaagtaccgacgtgagagaaaagagtcatatagaatgtatgtaaaggatttgtcgaac 33103075  T
Q  124 cacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattt 177  Q
     || ||||||||||||||| || | |||| |||||||||| |||||||||||||    
T  33103074 tacatttatttttaatgcaatgcaatttatctttcctttaagtttctgcaattt 33103021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 36571655 - 36571826
Alignment:
Q  11 agttttccatag-aaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    |||||||||||| ||||| |||||||||||||| |||| ||| ||||| |||| || ||||||  |  |||||||||||||| ||| | |||||||||||    
T  36571655 agttttccataggaaaaatgggtcgcaaatcacttatagaaa-ttctacaacactcgaagtactagcacgagagaaaagagttatacataatgtatgtaa 36571753  T
Q  110 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 183  Q
    ||||||||||||||||||||||||||||||||| || | || | |||| ||||| ||||||||| ||| |||||    
T  36571754 aggatttgtcgaaccacctttatttttaatgcaatgcaattaatcttt-ctttaagtttctgcagttttaactt 36571826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 20150435 - 20150563
Alignment:
Q  12 gttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 110  Q
    |||||||||||  |||||||||| ||||||||||||||| ||||||| |||| || ||||||||  ||||||||||| ||||||| | |||| ||| |||    
T  20150435 gttttccatagggaaaacgggtctcaaatcacctatacataattctacaacactcgaagtaccgacgcgagagaaaaaagtcatacaaaatgcatgcaaa 20150534  T
Q  111 ggatttgtcgaaccacctttatttttaat 139  Q
    ||||||||| |||||||||||||||||||    
T  20150535 ggatttgtcaaaccacctttatttttaat 20150563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 22607834 - 22607984
Alignment:
Q  13 ttttccatagaa-aaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaag 111  Q
    |||||||||||  |||||||||||||||||| |||  ||  ||||| |||| || ||||||||  || |||||||||||| ||||| |||||||||||||    
T  22607834 ttttccatagaggaaacgggtcgcaaatcacttatggaat-ttctataacaatcgaagtaccgtcgcaagagaaaagagttataaaaaatgtatgtaaag 22607932  T
Q  112 gatttgtcgaaccacctttatttttaatgcattgtattttacctttccttta 163  Q
    ||| ||  ||||||||||||||||||||||| |||| |||| ||||||||||    
T  22607933 gatctgctgaaccacctttatttttaatgcaatgtagtttatctttccttta 22607984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 139
Target Start/End: Original strand, 13202076 - 13202192
Alignment:
Q  22 gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcga 121  Q
    |||||||  |||||||||||| |||| ||| ||||| |||| || || |||||| ||||||||||| ||| ||| | |||||||||||||||||||||||    
T  13202076 gaaaaacatgtcgcaaatcacttatagaaa-ttctacaacactcgaaataccggcgcgagagaaaatagttatacataatgtatgtaaaggatttgtcga 13202174  T
Q  122 accacctttatttttaat 139  Q
    ||||||||||||||||||    
T  13202175 accacctttatttttaat 13202192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 17615430 - 17615272
Alignment:
Q  11 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    ||||||||||||  |||||||||| | |||||| |||| ||| ||||| |||| || |||||| || | |||| |||||||| | | | |||||||||||    
T  17615430 agttttccatagggaaaacgggtcacgaatcacttatagaaa-ttctacaacactcgaagtacaggcgggagaaaaaagagttacacataatgtatgtaa 17615332  T
Q  110 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttc 169  Q
    |||||||||||||| ||||||||||| |||||| || | || |||||| ||||| |||||    
T  17615331 aggatttgtcgaacaacctttattttgaatgcaatgcagttaaccttttctttaagtttc 17615272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 140
Target Start/End: Original strand, 22620063 - 22620153
Alignment:
Q  50 aaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatg 140  Q
    |||||||| |||| || ||||||| ||||||||||||| ||| ||  | |  ||||||||| |||||||||||||||||||||||||||||    
T  22620063 aaattctacaacactcgaagtaccagagcgagagaaaatagttattcaaaccgtatgtaaaagatttgtcgaaccacctttatttttaatg 22620153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 20866293 - 20866221
Alignment:
Q  111 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 183  Q
    ||||||||||||||||||||||||||||||||    | |||| |||| ||||| ||||||||||||| |||||    
T  20866293 ggatttgtcgaaccacctttatttttaatgcaacacaatttatcttttctttaagtttctgcaattttaactt 20866221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 22533687 - 22533830
Alignment:
Q  24 aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggag-cgagagaaaagagtcataaagaatgtatgtaaa-ggatttgtcga 121  Q
    |||| |||||||||||||  |||| ||| ||||| |||||||||| |||||||| | || |||| |||| ||| ||||||||||||||  ||||||| |     
T  22533687 aaaatgggtcgcaaatcatttatagaaa-ttctacaacattcaaactaccggagtctagggaaacgagttatacagaatgtatgtaaactgatttgtag- 22533784  T
Q  122 accacctttatttttaatgcattgtattttacctttcctttacgttt 168  Q
    |||| ||||| |||||||||| || ||||||| ||||||||| ||||    
T  22533785 acca-ctttacttttaatgcaatgcattttacttttcctttaagttt 22533830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 20886610 - 20886571
Alignment:
Q  122 accacctttatttttaatgcattgtattttacctttcctt 161  Q
    ||||||||||||||||||||| || |||||||||||||||    
T  20886610 accacctttatttttaatgcaatgcattttacctttcctt 20886571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 23455242 - 23455191
Alignment:
Q  81 gagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 131  Q
    ||||||||||||||| | ||||||||||| | ||||||||||||||||||||    
T  23455242 gagaaaagagtcatacaaaatgtatgtaatatgatttgtcgaaccaccttta 23455191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 13232743 - 13232801
Alignment:
Q  5 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaaca 62  Q
    ||||| ||||||||||||  ||||||| ||||||||||||||| || ||||||||||||    
T  13232743 aataatagttttccatagggaaaacggatcgcaaatcacctatgcataattctaaaaca 13232801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 153
Target Start/End: Complemental strand, 18780712 - 18780587
Alignment:
Q  29 gggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggag-cgagagaaaagagtcataaagaatgtatgtaaag-gatttgtcgaac-ca 125  Q
    |||||||||||||  |||||| ||||||| |||| ||||| |||||| | | || |||| |||| ||| ||||||||||||||| ||||||| || | |     
T  18780712 gggtcgcaaatca--tatacagaattctacaacactcaaactaccggcgtccagggaaacgagttatacagaatgtatgtaaagtgatttgtagaccacc 18780615  T
Q  126 cctttatttttaatgcattgtattttac 153  Q
    |||||  ||||||||||||| |||||||    
T  18780614 ccttttattttaatgcattgcattttac 18780587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 89; Significance: 6e-43; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 29 - 233
Target Start/End: Complemental strand, 20995 - 20793
Alignment:
Q  29 gggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacct 128  Q
    |||||||||||||| |||| | |||||||||||| |  ||||||     |||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  20995 gggtcgcaaatcacgtata-ataattctaaaacacttgaagtactaacacgagagaaaagagtcataaagaatgtatgtaaagaatttgtggaaccacct 20897  T
Q  129 ttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaacttaatgccttaactttgcttttaaaaccttttttctgtcgaaagacg 228  Q
    ||||||| ||||||||| |||||  |||||||||| ||||||||| |||||||||||||| || |   | ||||||||||| |||||||||| |||||||    
T  20896 ttattttaaatgcattgcattttttctttcctttaagtttctgcattttaaacttaatgcatttatactacttttaaaacc-tttttctgtcaaaagacg 20798  T
Q  229 ccaca 233  Q
    |||||    
T  20797 ccaca 20793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0555 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0555
Description:

Target: scaffold0555; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 5 - 188
Target Start/End: Original strand, 5660 - 5851
Alignment:
Q  5 aataagagttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgt 103  Q
    ||||||||||||| ||||  ||||||||||| |||||||||||||| |||||||||||  |  ||||||||   ||||| ||||||||||||| ||||||    
T  5660 aataagagttttctatagggaaaacgggtcgtaaatcacctatacagaattctaaaacgcttgaagtaccgacacgagaaaaaagagtcataaggaatgt 5759  T
Q  104 atgtaaaggatttgtcgaaccacctttatttttaatgca-ttg------tattttacctttcctttacgtttctgcaatttaaacttaatgc 188  Q
    |||||||| |||||||| ||||||||||||||||||||| |||      |||||| ||||| ||||| |||| |||||||||||||||||||    
T  5760 atgtaaagaatttgtcggaccacctttatttttaatgcacttgcattgttatttttccttttctttaagtttttgcaatttaaacttaatgc 5851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 374125 - 374294
Alignment:
Q  11 agttttccatagaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaaa 110  Q
    ||||||||||||  |||  ||||||||||||| |||| ||| | ||| |||| ||||||||| || ||||||||||||||| ||| | ||||||||||||    
T  374125 agttttccatagggaaaacggtcgcaaatcacttatagaaa-tgctacaacactcaaagtacaggcgcgagagaaaagagt-atacaaaatgtatgtaaa 374222  T
Q  111 ggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 183  Q
    | |||||||||||||||||||||||||||||| || | |||| |||||||||| |||| |||||||| |||||    
T  374223 gtatttgtcgaaccacctttatttttaatgcaatgcaatttatctttccttta-gtttttgcaattttaactt 374294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 183
Target Start/End: Complemental strand, 17392 - 17221
Alignment:
Q  11 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    ||||||||||||  |||||||||| |||||||| |||| ||| || || |||| || | ||||||| ||||||||||||||| ||| |||||||||||||    
T  17392 agttttccatagggaaaacgggtcacaaatcacttatagaaa-ttgtacaacactcga-gtaccggcgcgagagaaaagagttatacagaatgtatgtaa 17295  T
Q  110 aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaatttaaactt 183  Q
    ||||||||||||||||||||||||||||| ||| || | |||| | || ||||| ||||||||| ||| |||||    
T  17294 aggatttgtcgaaccacctttatttttaaagcaatgcaatttatcatttctttaagtttctgcacttttaactt 17221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 68 - 183
Target Start/End: Complemental strand, 4661 - 4546
Alignment:
Q  68 agtaccggagcgagagaaaagagtcataaagaatgtatgtaaaggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtt 167  Q
    |||||||| ||||||||||||||| ||| |||||| || |||| ||||||| ||||||||||||||||||| ||| || | ||||   || ||||| |||    
T  4661 agtaccggcgcgagagaaaagagttatacagaatgcatttaaaagatttgtagaaccacctttatttttaaagcaatgcaatttattatttctttaagtt 4562  T
Q  168 tctgcaatttaaactt 183  Q
    |||||| ||| |||||    
T  4561 tctgcacttttaactt 4546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 11 - 111
Target Start/End: Complemental strand, 13092 - 12991
Alignment:
Q  11 agttttccataga-aaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgtaa 109  Q
    ||||||||||||  ||||||||||||||||||||||| || |||||||||||| || ||||||  | |||||||||||||||||||||||||||||||||    
T  13092 agttttccatagggaaaacgggtcgcaaatcacctatgcagaattctaaaacactcgaagtactagcgcgagagaaaagagtcataaagaatgtatgtaa 12993  T
Q  110 ag 111  Q
    ||    
T  12992 ag 12991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 20719 - 20572
Alignment:
Q  5 aataagagttttccatagaaaa-acgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgt 103  Q
    ||||| ||||||||||||  || |||||||||||||||| || | ||  |||||||||| || ||||||||| ||||||||||||||| ||| | |||||    
T  20719 aataatagttttccataggcaagacgggtcgcaaatcacttacagaac-ttctaaaacactcgaagtaccggcgcgagagaaaagagttatacataatgt 20621  T
Q  104 atgt-aaaggatttgtcgaaccacctttatttttaatgcattgtatttta 152  Q
    |||| |||  ||||||| ||||||||||| |||||||||| |||| ||||    
T  20620 atgtgaaataatttgtcaaaccaccttta-ttttaatgcaatgtaattta 20572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1102 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1102
Description:

Target: scaffold1102; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 871 - 996
Alignment:
Q  11 agttttccata-gaaaaacgggtcgcaaatcacctatacaaaattctaaaacattcaaagtaccggagcgagagaaaagagtcataaagaatgtatgt-a 108  Q
    ||||||||||| | ||||||||| ||||||||| |||| ||| ||| |||||| || ||||||||| |||||| | |||||| ||| | ||||||||| |    
T  871 agttttccatacggaaaacgggttgcaaatcacttatagaaa-ttccaaaacactcgaagtaccggcgcgagaaagaagagttatacataatgtatgtaa 969  T
Q  109 aaggatttgtcgaaccacctttatttt 135  Q
    || ||||||| |||| |||||||||||    
T  970 aatgatttgttgaacaacctttatttt 996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 183
Target Start/End: Original strand, 26930 - 27031
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccacctttatttttaatgcattgtattttacctttcctttacgtttctgcaattta 178  Q
    |||||||||||||||| | |||||||||||    |||||||||||||||||||  ||||||||| || | |||| |||| ||||| ||||||||  ||||    
T  26930 agagaaaagagtcatacataatgtatgtaatctaatttgtcgaaccaccttta--tttaatgcaatgcaatttatcttttcttta-gtttctgcgtttta 27026  T
Q  179 aactt 183  Q
    |||||    
T  27027 aactt 27031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 5125 - 5177
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaaa-ggatttgtcgaaccaccttta 131  Q
    |||||||||||||||| | ||||||||||||   |||||||||||||||||||    
T  5125 agagaaaagagtcatacaaaatgtatgtaaaccaatttgtcgaaccaccttta 5177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 131
Target Start/End: Original strand, 38915 - 38967
Alignment:
Q  80 agagaaaagagtcataaagaatgtatgtaa-aggatttgtcgaaccaccttta 131  Q
    |||||||||||||||| | |||||||||||   ||||||||||||||||||||    
T  38915 agagaaaagagtcatataaaatgtatgtaatctgatttgtcgaaccaccttta 38967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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