View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21545_high_25 (Length: 254)

Name: NF21545_high_25
Description: NF21545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21545_high_25
NF21545_high_25
[»] chr2 (2 HSPs)
chr2 (6-75)||(39182523-39182592)
chr2 (144-203)||(8570560-8570619)
[»] chr6 (1 HSPs)
chr6 (6-75)||(2103047-2103116)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 39182523 - 39182592
Alignment:
Q  6 agtctaacctccaagatttttgccgcgatttgcttgagcatcagctgcagagttagaacccttcaacaat 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39182523 agtctaacctccaagatttttgccgcgatttgcttgagcatcagctgcagagttagaacccttcaacaat 39182592  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 8570619 - 8570560
Alignment:
Q  144 aagaacgtttcagtataccccagaggaattcaatacaccggtacaagattgtaacaatta 203  Q
    |||||||| |||||||| | ||||||||||||||||||||| ||||  || |||||||||    
T  8570619 aagaacgtctcagtataacgcagaggaattcaatacaccggaacaatgttttaacaatta 8570560  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 2103116 - 2103047
Alignment:
Q  6 agtctaacctccaagatttttgccgcgatttgcttgagcatcagctgcagagttagaacccttcaacaat 75  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2103116 agtctaacctccaagatttttgccacgatttgcttgagcatcagctgcagagttagaacccttcaacaat 2103047  T

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