View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21545_high_7 (Length: 516)

Name: NF21545_high_7
Description: NF21545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21545_high_7
NF21545_high_7
[»] chr1 (17 HSPs)
chr1 (13-499)||(6592227-6592713)
chr1 (17-494)||(6601486-6601960)
chr1 (312-470)||(2010402-2010560)
chr1 (311-494)||(2011788-2011971)
chr1 (91-211)||(3361842-3361962)
chr1 (322-413)||(3340418-3340509)
chr1 (427-494)||(2006280-2006347)
chr1 (322-404)||(2948497-2948579)
chr1 (156-210)||(3340636-3340690)
chr1 (312-369)||(2019716-2019773)
chr1 (313-384)||(3218540-3218611)
chr1 (322-385)||(3349320-3349383)
chr1 (235-293)||(3349433-3349491)
chr1 (320-393)||(3372620-3372693)
chr1 (331-392)||(3378665-3378726)
chr1 (312-369)||(4335023-4335080)
chr1 (35-127)||(3218247-3218339)
[»] chr2 (5 HSPs)
chr2 (428-494)||(20952830-20952896)
chr2 (415-494)||(20934286-20934365)
chr2 (428-470)||(39273899-39273941)
chr2 (159-212)||(20923600-20923653)
chr2 (312-364)||(20923436-20923488)
[»] chr5 (1 HSPs)
chr5 (322-403)||(17969781-17969862)
[»] chr4 (1 HSPs)
chr4 (153-206)||(21237664-21237717)


Alignment Details
Target: chr1 (Bit Score: 475; Significance: 0; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 13 - 499
Target Start/End: Original strand, 6592227 - 6592713
Alignment:
Q  13 aatatcaatcgttcaagcagaaggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttga 112  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592227 aatatcaatcgttcaagcataaggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttga 6592326  T
Q  113 aaccttgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592327 aaccttgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttg 6592426  T
Q  213 gactgggtttttccagatttctaacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagtgacatcaatgtgatcccga 312  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592427 gtctgggtttttccagatttctaacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagtgacatcaatgtgatcccga 6592526  T
Q  313 gagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagttt 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6592527 gagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagttt 6592626  T
Q  413 cggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttctggctg 499  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6592627 cggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagttggtagataaaatacttgttctggctg 6592713  T

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Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 17 - 494
Target Start/End: Original strand, 6601486 - 6601960
Alignment:
Q  17 tcaatcgttcaagcagaaggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaacc 116  Q
    ||||||||||||||| | ||||  | ||||| |||||||||| |||||||| || ||| ||||||| ||||||||||||||||||||||||| |||| ||    
T  6601486 tcaatcgttcaagcaaagggcaagtagatatcaagttttcaaaagcatcttgagacaaggtaacatgttgcagatcaagactcttcaagttcctgaatcc 6601585  T
Q  117 ttgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttggact 216  Q
    ||||||||||||||||||||||||||| || |  ||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||  ||    
T  6601586 ttgaaatgttgatggtggtataagccaacagttaaataattctaaatgatgtaaaccttgacaagaaaataagcatgaaggtattttatagcgttgccct 6601685  T
Q  217 gggtttttccagatttctaacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagtgacatcaatgtgatcccga---g 313  Q
          ||||||||||| | |||||||||||||||  ||| ||||||||||| ||||||||| ||||||||||| || ||  ||||| | || |||   |    
T  6601686 ------ttccagatttccagcacaaactctttaacaggccttctggttagatgaagagtccatcgatcaatatcggtcactccaatgagctcgcgatggg 6601779  T
Q  314 agagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtttc 413  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| ||    
T  6601780 agagcttgaactttttgattggcccagaatggagtaaaagtacatgatcaataattctcgaaagtttgctcttgataactaaaaggtcttcagaagtgtc 6601879  T
Q  414 ggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttct 494  Q
    ||||| |||||   ||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||    
T  6601880 ggagatacattggctatcaaacacaagatttggaagtgtggcccatttgtacctccatttggttgataaaatacttgttct 6601960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 312 - 470
Target Start/End: Complemental strand, 2010560 - 2010402
Alignment:
Q  312 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtt 411  Q
    ||||||||||||||| |||||||| || |||   ||||||||||||||||||||||||    ||||||| |||| |||||||||| ||   |  || |||    
T  2010560 agagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaataattgccaaaagctttctctcgataactaaagggcgatgggatgtt 2010461  T
Q  412 tcggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctcca 470  Q
     | |||| |||||  |||||||||||||||||||| | |||||||||||||||||||||    
T  2010460 gcagagacacattgtttatcaaacacaagatttggtattgtggtccatttgtacctcca 2010402  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 311 - 494
Target Start/End: Complemental strand, 2011971 - 2011788
Alignment:
Q  311 gagagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagt 410  Q
    |||||||||||||||| |||||||| ||| ||   |||||||||||||| || ||||||    ||||||| ||||||||| ||  | ||| || ||| ||    
T  2011971 gagagagcttgaacttgttgattggcccataataaagtaaaagtacatggtcgataattgccaaaagctttctcttgatagctgcagggtgttcagatgt 2011872  T
Q  411 ttcggagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttct 494  Q
    | | || | |||||    |||||||||||||||||| | |||| |||||||||||||||| | | | |||||||||||||||||    
T  2011871 tgcagacacacattgtgaatcaaacacaagatttggtattgtgatccatttgtacctccatttgtttgataaaatacttgttct 2011788  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 3361962 - 3361842
Alignment:
Q  91 tcaagactcttcaagttcttgaaaccttgaaatgttgatggtggtataagccagcattctaataattctaaatgatgcaaactttgacaagaaaataacc 190  Q
    |||||||| |||||||||||||| |||| ||| |||| ||| ||| ||||||| ||   |  ||||||||||||||| |||||||||||||| ||||| |    
T  3361962 tcaagacttttcaagttcttgaagccttcaaacgttgttggaggtttaagccaacagcattttaattctaaatgatgtaaactttgacaagagaataagc 3361863  T
Q  191 atgaaggtattttatagcgtt 211  Q
    |  |||| || ||||||||||    
T  3361862 accaagggatcttatagcgtt 3361842  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 413
Target Start/End: Complemental strand, 3340509 - 3340418
Alignment:
Q  322 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctttagaagtttc 413  Q
    ||||| |||||||| |||||| | ||||||||||||||||||| ||||||| ||| ||||||||  |||||| || ||| ||| ||||||||    
T  3340509 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattcttaaaaacttgctctcaataactgaagggtgtttggaagtttc 3340418  T

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Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 427 - 494
Target Start/End: Complemental strand, 2006347 - 2006280
Alignment:
Q  427 ttatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttct 494  Q
    |||||||||||||||||||| | ||||| ||||||||||||||| | | | ||||||| |||||||||    
T  2006347 ttatcaaacacaagatttggtattgtggcccatttgtacctccatttgttggataaaacacttgttct 2006280  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 404
Target Start/End: Original strand, 2948497 - 2948579
Alignment:
Q  322 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtcttt 404  Q
    ||||| |||||||| |||||| | ||||||||||||||||||| ||||||  ||| ||||||||  |||||| || |||||||    
T  2948497 aacttgttgattggcccagaatgaagtaaaagtacatgatcaacaattctcaaaaacttgctctcaataactgaagggtcttt 2948579  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 210
Target Start/End: Complemental strand, 3340690 - 3340636
Alignment:
Q  156 ttctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgt 210  Q
    ||||||||| ||||||||||||||||| ||||| ||  |||||||||||||||||    
T  3340690 ttctaaatgttgcaaactttgacaagagaataagcagcaaggtattttatagcgt 3340636  T

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Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 2019773 - 2019716
Alignment:
Q  312 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataatt 369  Q
    ||||||||||||||| |||||||| || |||   ||||||||||||||||||||||||    
T  2019773 agagagcttgaacttgttgattggcccggaataaagtaaaagtacatgatcaataatt 2019716  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 384
Target Start/End: Original strand, 3218540 - 3218611
Alignment:
Q  313 gagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctc 384  Q
    ||||||| |||||| ||||| ||||||||| | |||| |||||||||||||| ||||||  | |||||||||    
T  3218540 gagagctggaacttgttgatcggtccagaatgaagtagaagtacatgatcaacaattctcaacagcttgctc 3218611  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 322 - 385
Target Start/End: Complemental strand, 3349383 - 3349320
Alignment:
Q  322 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctct 385  Q
    ||||| |||||| | |||||| | ||||||||||||||||||||||||||  ||| ||||||||    
T  3349383 aacttgttgattagcccagaatgaagtaaaagtacatgatcaataattctcaaaaacttgctct 3349320  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 235 - 293
Target Start/End: Complemental strand, 3349491 - 3349433
Alignment:
Q  235 aacacaaactctttaacctgccatctggttagataaagagtccaccgatcaatatcagt 293  Q
    ||||||||||||||||  || | || |||||||| |||| |||||||||||||||||||    
T  3349491 aacacaaactctttaatatgtcttccggttagatgaagaatccaccgatcaatatcagt 3349433  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 393
Target Start/End: Complemental strand, 3372693 - 3372620
Alignment:
Q  320 tgaactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataact 393  Q
    ||||||| |||||||| |||||| |  |||||||||||||||||| ||||||  ||| |||| | |||||||||    
T  3372693 tgaacttgttgattggaccagaatgttgtaaaagtacatgatcaacaattctcaaaaacttgttattgataact 3372620  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 392
Target Start/End: Complemental strand, 3378726 - 3378665
Alignment:
Q  331 attggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataac 392  Q
    ||||| |||||| | ||||||||||||||||| ||||||||  ||| |||||||| ||||||    
T  3378726 attggcccagaatgaagtaaaagtacatgatcgataattctcaaaaacttgctctcgataac 3378665  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 4335023 - 4335080
Alignment:
Q  312 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaataatt 369  Q
    ||||| ||||||| | ||||||||||||||| | | ||||||||||||||||| ||||    
T  4335023 agagaacttgaacatgttgattggtccagaatgaactaaaagtacatgatcaacaatt 4335080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 3218247 - 3218339
Alignment:
Q  35 ggcagctggatattaagttttcaacagcatctttagtcaatgtaacatattgcagatcaagactcttcaagttcttgaaaccttgaaatgttg 127  Q
    |||||| |||||| |||||||||| |||||||| || || |||||| |  |  || |||||||| |||||||||||||| |||| ||| ||||    
T  3218247 ggcagccggatatcaagttttcaaaagcatcttgagccattgtaacctgatatagttcaagacttttcaagttcttgaagcctttaaacgttg 3218339  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 428 - 494
Target Start/End: Complemental strand, 20952896 - 20952830
Alignment:
Q  428 tatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttct 494  Q
    |||||||||||||||||||||||||| ||||||||| |||||| |   ||||||||| |||||||||    
T  20952896 tatcaaacacaagatttggaagtgtgttccatttgttcctccattttctagataaaacacttgttct 20952830  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 494
Target Start/End: Complemental strand, 20934365 - 20934286
Alignment:
Q  415 gagagacattcattatcaaacacaagatttggaagtgtggtccatttgtacctccagtaggtagataaaatacttgttct 494  Q
    ||||||||||   ||||||||||||||||||| ||||||  |||||||| |||||| |   ||||||||| |||||||||    
T  20934365 gagagacattgtctatcaaacacaagatttgggagtgtgtaccatttgttcctccattttttagataaaacacttgttct 20934286  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 428 - 470
Target Start/End: Complemental strand, 39273941 - 39273899
Alignment:
Q  428 tatcaaacacaagatttggaagtgtggtccatttgtacctcca 470  Q
    ||||||||||||||||||| ||||||  |||||||||||||||    
T  39273941 tatcaaacacaagatttggtagtgtgtaccatttgtacctcca 39273899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 20923653 - 20923600
Alignment:
Q  159 taaatgatgcaaactttgacaagaaaataaccatgaaggtattttatagcgttg 212  Q
    ||||||||| |||||||||||||| ||||| ||  ||||||| |||||||||||    
T  20923653 taaatgatgtaaactttgacaagagaataagcaccaaggtatgttatagcgttg 20923600  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 364
Target Start/End: Complemental strand, 20923488 - 20923436
Alignment:
Q  312 agagagcttgaactttttgattggtccagaacggagtaaaagtacatgatcaa 364  Q
    ||||| ||||||||| |||||||| |||||| | |||||||||||||| ||||    
T  20923488 agagatcttgaacttgttgattggcccagaatgaagtaaaagtacatggtcaa 20923436  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 322 - 403
Target Start/End: Complemental strand, 17969862 - 17969781
Alignment:
Q  322 aactttttgattggtccagaacggagtaaaagtacatgatcaataattcttgaaagcttgctcttgataactaaaaggtctt 403  Q
    ||||| |||||||| || ||| | |||||||||||||||||||| |||||  ||| ||||| || ||||||| ||| |||||    
T  17969862 aacttgttgattggccctgaatgaagtaaaagtacatgatcaatgattctcaaaaacttgccctcgataactgaaaagtctt 17969781  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 153 - 206
Target Start/End: Complemental strand, 21237717 - 21237664
Alignment:
Q  153 taattctaaatgatgcaaactttgacaagaaaataaccatgaaggtattttata 206  Q
    ||||||||||||||| |||||||||||||| ||||| ||  ||||||| |||||    
T  21237717 taattctaaatgatgtaaactttgacaagagaataagcaccaaggtatcttata 21237664  T

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