View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21545_low_11 (Length: 486)
Name: NF21545_low_11
Description: NF21545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21545_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 239 - 471
Target Start/End: Complemental strand, 27398553 - 27398321
Alignment:
| Q |
239 |
tatttaagaccggaggaattacatggcaaggtgacatttgagtgacatatagttgaatttatgataacttggttaagaattgaggctatcctttt-atag |
337 |
Q |
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| T |
27398553 |
tatttaagaccggaggaattacatgccaacgtgacatttgattcccatatagttgaatttatgataacttggttaagaattgaggttatcctttttatag |
27398454 |
T |
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| Q |
338 |
ctgtactgattttccatttgaacaattaatgcgaatgtcatactagaaaagaaccaaccgaccaatcattttgctgaatgtgacctctccaggcttatat |
437 |
Q |
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| T |
27398453 |
ctgtactgattttccatttga-caattaatgcgaatgtcatactagaaaagaaccaaccgaccaatcattttgttgaatgtgacctctccaggctcatat |
27398355 |
T |
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| Q |
438 |
tgaaagttcctcgacaacttagctagctggttat |
471 |
Q |
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| T |
27398354 |
tgaaagttcctcgacaacttagctagctggttat |
27398321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 11 - 225
Target Start/End: Complemental strand, 27398995 - 27398775
Alignment:
| Q |
11 |
catcatcatgattgacaggagaggctgaggcaccttccctcaacctccccaacctaaggttgatttg-tttttagactaaaacaatgggttttacggtta |
109 |
Q |
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| T |
27398995 |
catcatcatgattgacaggagagactgaggcaccttccctcaacctccccaacctaaggttgatttgctttttagactaaaacaatgggttttacggtta |
27398896 |
T |
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| Q |
110 |
agccaaattccattttttaatt-aaaaagcctaaacatgagtgcgtgagtctataaatcattca-------tatattcattacaccctctagtcttaaat |
201 |
Q |
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| T |
27398895 |
agccaaattccattttttaattaaaaaagcctaaaca----tgcgtgagtctataaatcattcattgttcctatattcattacaccctttagtcttatat |
27398800 |
T |
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| Q |
202 |
ataag-aaaaatatatatatacatg |
225 |
Q |
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| T |
27398799 |
ataagcaaaaatgtatatatacatg |
27398775 |
T |
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