View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21545_low_15 (Length: 448)
Name: NF21545_low_15
Description: NF21545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21545_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 9 - 432
Target Start/End: Original strand, 31855715 - 31856140
Alignment:
| Q |
9 |
agcagagacatctagaaccttagcatttgtggaccgc--tttagaaatattcatattttactatgattaagttgtaataagtaactaactcttgtgttct |
106 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31855715 |
agcagagacctctagaaccttagcatttgtggaccgcaatttagaaatattcatattttactatgattaagttgtaataagtaactaactcttgtgttct |
31855814 |
T |
|
| Q |
107 |
caacatggttatagccaaatgaagatgctcaatattcagctctagccaaagttgaactgaaaaagttgtttgcgacaaaaacggtacatatttaacatgt |
206 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31855815 |
caacgtggttatagccaaatgaagatgctcaatattcagctctagccaaagttgaactgaaaaagttgtttgcgacaaaaacggtacatatttaacatgt |
31855914 |
T |
|
| Q |
207 |
ctttgtgatgtacattatactttcttagactagataatttaaattaagttttctttcaataatgcagataaaagagttgaaagaggtaagtttatcagct |
306 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31855915 |
ctttgtgatgtactttatactttcttagactagataatttaaattaagttttctttcaataatgcagataaaagagttgaaagaggtaagtttatcagct |
31856014 |
T |
|
| Q |
307 |
aaccaagagaagtcagaaatgaagaaaatgacatggaaggttgaaggggacaaaggacaagaacctcaagcagtaagggggagtcctgtcagcacttcag |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31856015 |
aaccaagagaagtcagaaatgaagaaaatgacatggaaggttgaaggggacaaaggacaagaacctcaagcagtaagggggagtcctgtcagcacttcag |
31856114 |
T |
|
| Q |
407 |
attttgttgttgagcttggtcctatg |
432 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
31856115 |
attttgttgttgagcttggtcctatg |
31856140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University