View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21545_low_2 (Length: 598)

Name: NF21545_low_2
Description: NF21545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21545_low_2
NF21545_low_2
[»] chr1 (4 HSPs)
chr1 (19-333)||(52421502-52421819)
chr1 (318-593)||(52421225-52421490)
chr1 (130-243)||(42713751-42713865)
chr1 (455-498)||(38877680-38877723)
[»] chr5 (1 HSPs)
chr5 (472-593)||(37124367-37124487)
[»] chr3 (1 HSPs)
chr3 (455-532)||(50621707-50621784)
[»] chr8 (2 HSPs)
chr8 (455-515)||(45512843-45512903)
chr8 (463-513)||(9989310-9989360)
[»] chr7 (1 HSPs)
chr7 (461-514)||(41626853-41626906)
[»] chr6 (3 HSPs)
chr6 (462-503)||(2079220-2079261)
chr6 (477-525)||(20834423-20834471)
chr6 (455-515)||(12134248-12134308)
[»] chr4 (6 HSPs)
chr4 (29-105)||(14151291-14151368)
chr4 (455-516)||(38904066-38904127)
chr4 (455-503)||(29398706-29398754)
chr4 (455-501)||(40933243-40933289)
chr4 (462-515)||(20105825-20105878)
chr4 (30-82)||(14150329-14150381)
[»] chr2 (2 HSPs)
chr2 (455-504)||(37393514-37393563)
chr2 (455-501)||(28908489-28908535)


Alignment Details
Target: chr1 (Bit Score: 291; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 52421819 - 52421502
Alignment:
Q  19 cattccaaagaaagaatgtcatttccctgtcaaaataacacggttgatcaaaatcacacttttaataaatcagacaaacttaggttcagattttcatact 118  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52421819 cattccaaagaaagaatgtcatttccctgtcaaaataacacagttgatcaaaatcacacttttaataaatcagacaaacttaggttcagattttcatact 52421720  T
Q  119 gtttgttaagtctagttttatggtgcacaaataagataagttttgcatcaaacacaacttattttc-acggttgaatcaataaattgcatcatgggatca 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52421719 gtttgttaagtctagttttatggtgcacaaataagataagttttgcatcaaacacaacttattttcgacggttgaatcaataaattgcatcatgggatca 52421620  T
Q  218 actaagatatgataatatttattgatccatggatgaaa--acacacactcgtgtggatgatgtaagactattttccttgcgcatattaaacaaaatctgt 315  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  52421619 actaagatatgataatatttattgatccatggatgaaaacacacacactcgtgtggatgatgtaagactattttccttgcgcgtattaaacaaaatctgt 52421520  T
Q  316 tattacaacttctagtat 333  Q
    ||||||||||||||||||    
T  52421519 tattacaacttctagtat 52421502  T

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Target: chr1; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 318 - 593
Target Start/End: Complemental strand, 52421490 - 52421225
Alignment:
Q  318 ttacaacttctagtataattcaacgatggatataactaatattcactacaaagattttttgtaaatggtaaatacttctaaactccaacatataactgta 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||    
T  52421490 ttacaacttctagtataattcaacgatggatataactaatattcactacaaagattttttgtaaatggtaaa----------ctccaacatataactgta 52421401  T
Q  418 ttaaatttaaactctacttattttcaccaatctttgtaacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacactct 517  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52421400 ttaaatttaaactctacttattttcaccaatttttgtaacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacactct 52421301  T
Q  518 acttcatacaatattatccgtcttaaagttattcaataaaatttctccttcaacatgagtggtactttcatctcac 593  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  52421300 acttcatacaacattgtccgtcttaaagttattcaataaaatttctccttcaacatgagtggtactttcatatcac 52421225  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 42713865 - 42713751
Alignment:
Q  130 ctagttttatggtgcacaaataagataagttttgcatcaaacacaacttatttt-cacggttgaatcaataaattgcatcatgggatcaactaagatatg 228  Q
    ||||||||||||||||||||| |||||||||||||||||  ||||| ||||||| |||  ||  |||||||||| ||||||  ||||||| | ||||||     
T  42713865 ctagttttatggtgcacaaatgagataagttttgcatcatgcacaagttattttccacaattcgatcaataaatcgcatcagtggatcaaatgagatatc 42713766  T
Q  229 ataatatttattgat 243  Q
    || ||| ||||||||    
T  42713765 atgatacttattgat 42713751  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 455 - 498
Target Start/End: Original strand, 38877680 - 38877723
Alignment:
Q  455 aacattctcatcttcgctacacttattttattctcgtgttagtt 498  Q
    ||||| |||||||  |||||||||||||||||||||||||||||    
T  38877680 aacatcctcatctctgctacacttattttattctcgtgttagtt 38877723  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 472 - 593
Target Start/End: Complemental strand, 37124487 - 37124367
Alignment:
Q  472 tacacttattttattctcgtgttagttcttcattgtccaacactctacttcatacaatattatccgtcttaaagttattcaataaaatttctccttcaac 571  Q
    |||||| ||| |||||||||||| | ||||||  ||||||||||||| |||||| || ||| || |||||| | || | |||| |||||||||||| |||    
T  37124487 tacactgattgtattctcgtgttgggtcttcaccgtccaacactcta-ttcatataacattgtcggtcttacacttgtccaatgaaatttctcctttaac 37124389  T
Q  572 atgagtggtactttcatctcac 593  Q
     |||||||||||||||| ||||    
T  37124388 ttgagtggtactttcatttcac 37124367  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 455 - 532
Target Start/End: Original strand, 50621707 - 50621784
Alignment:
Q  455 aacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacactctacttcatacaatatt 532  Q
    ||||||||||||| ||||||||||||||||| ||||| ||||||||| | |||  ||||||||  |||| ||||||||    
T  50621707 aacattctcatctccgctacacttattttatcctcgtattagttcttgactgttgaacactctgtttcacacaatatt 50621784  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 515
Target Start/End: Original strand, 45512843 - 45512903
Alignment:
Q  455 aacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacact 515  Q
    ||||||||||||| |||||  ||||||||||| ||||||| |||||||| |||||||||||    
T  45512843 aacattctcatctccgctatgcttattttattttcgtgttggttcttcaatgtccaacact 45512903  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 513
Target Start/End: Original strand, 9989310 - 9989360
Alignment:
Q  463 catcttcgctacacttattttattctcgtgttagttcttcattgtccaaca 513  Q
    ||||||| |||| ||||||||||| || | |||||||||||||||||||||    
T  9989310 catcttcactacgcttattttattttcattttagttcttcattgtccaaca 9989360  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 461 - 514
Target Start/End: Complemental strand, 41626906 - 41626853
Alignment:
Q  461 ctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacac 514  Q
    ||||||| ||||||||| |||||| |||| |||||||||||||||||| |||||    
T  41626906 ctcatctccgctacactaattttactctcatgttagttcttcattgtcaaacac 41626853  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 462 - 503
Target Start/End: Complemental strand, 2079261 - 2079220
Alignment:
Q  462 tcatcttcgctacacttattttattctcgtgttagttcttca 503  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  2079261 tcatctccgctacgcttattttattctcgtgttagttcttca 2079220  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 477 - 525
Target Start/End: Original strand, 20834423 - 20834471
Alignment:
Q  477 ttattttattctcgtgttagttcttcattgtccaacactctacttcata 525  Q
    |||||||||||||||||||| |||||||||  |||||||||| ||||||    
T  20834423 ttattttattctcgtgttagatcttcattgctcaacactctatttcata 20834471  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 515
Target Start/End: Original strand, 12134248 - 12134308
Alignment:
Q  455 aacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacact 515  Q
    |||||||||||||  ||||  |||| ||||||||||||||||||||||  || ||||||||    
T  12134248 aacattctcatctctgctatgcttagtttattctcgtgttagttcttcgctgcccaacact 12134308  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 29 - 105
Target Start/End: Original strand, 14151291 - 14151368
Alignment:
Q  29 aaagaatgtcatttccctgtcaaaataacacggttgatcaaaatcacacttttaataaatcagac-aaacttaggttc 105  Q
    ||||||||||||| ||||||   ||||||| | ||||||||||||||||||||| ||||  |||| ||||||||||||    
T  14151291 aaagaatgtcattgccctgtagtaataacaagattgatcaaaatcacacttttattaaaatagacaaaacttaggttc 14151368  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 455 - 516
Target Start/End: Original strand, 38904066 - 38904127
Alignment:
Q  455 aacattctcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacactc 516  Q
    |||||||||||||| ||||||||||||||||||| ||||| ||| || | || |||||||||    
T  38904066 aacattctcatctttgctacacttattttattcttgtgttggttttttactgcccaacactc 38904127  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 455 - 503
Target Start/End: Complemental strand, 29398754 - 29398706
Alignment:
Q  455 aacattctcatcttcgctacacttattttattctcgtgttagttcttca 503  Q
    ||||| ||||||| ||||||||||||||||||||| |||| ||||||||    
T  29398754 aacatcctcatctccgctacacttattttattctcatgttggttcttca 29398706  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 501
Target Start/End: Original strand, 40933243 - 40933289
Alignment:
Q  455 aacattctcatcttcgctacacttattttattctcgtgttagttctt 501  Q
    ||||| ||||||| |||||||||||||||| ||||||||| ||||||    
T  40933243 aacatcctcatctacgctacacttattttactctcgtgttggttctt 40933289  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 515
Target Start/End: Original strand, 20105825 - 20105878
Alignment:
Q  462 tcatcttcgctacacttattttattctcgtgttagttcttcattgtccaacact 515  Q
    |||||| ||||||| |||| ||||||| |||||||| ||||| |||||||||||    
T  20105825 tcatctccgctacatttatattattcttgtgttagtccttcactgtccaacact 20105878  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 14150381 - 14150329
Alignment:
Q  30 aagaatgtcatttccctgtcaaaataacacggttgatcaaaatcacactttta 82  Q
    |||||||||||| || ||| | ||||||| | |||||||||||||||||||||    
T  14150381 aagaatgtcattgccgtgtaataataacaagattgatcaaaatcacactttta 14150329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 455 - 504
Target Start/End: Original strand, 37393514 - 37393563
Alignment:
Q  455 aacattctcatcttcgctacacttattttattctcgtgttagttcttcat 504  Q
    ||||| ||| ||||| |||||||||||||||||||||||| |||||||||    
T  37393514 aacatcctcgtcttctctacacttattttattctcgtgtttgttcttcat 37393563  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 501
Target Start/End: Original strand, 28908489 - 28908535
Alignment:
Q  455 aacattctcatcttcgctacacttattttattctcgtgttagttctt 501  Q
    ||||||||||||| |||||||||||||||| ||||||| | ||||||    
T  28908489 aacattctcatctccgctacacttattttactctcgtgctggttctt 28908535  T

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