View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21545_low_27 (Length: 254)

Name: NF21545_low_27
Description: NF21545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21545_low_27
NF21545_low_27
[»] chr2 (2 HSPs)
chr2 (6-75)||(39182523-39182592)
chr2 (144-203)||(8570560-8570619)
[»] chr6 (1 HSPs)
chr6 (6-75)||(2103047-2103116)


Alignment Details
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 39182523 - 39182592
Alignment:
Q  6 agtctaacctccaagatttttgccgcgatttgcttgagcatcagctgcagagttagaacccttcaacaat 75  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39182523 agtctaacctccaagatttttgccgcgatttgcttgagcatcagctgcagagttagaacccttcaacaat 39182592  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 8570619 - 8570560
Alignment:
Q  144 aagaacgtttcagtataccccagaggaattcaatacaccggtacaagattgtaacaatta 203  Q
    |||||||| |||||||| | ||||||||||||||||||||| ||||  || |||||||||    
T  8570619 aagaacgtctcagtataacgcagaggaattcaatacaccggaacaatgttttaacaatta 8570560  T

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Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 75
Target Start/End: Complemental strand, 2103116 - 2103047
Alignment:
Q  6 agtctaacctccaagatttttgccgcgatttgcttgagcatcagctgcagagttagaacccttcaacaat 75  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2103116 agtctaacctccaagatttttgccacgatttgcttgagcatcagctgcagagttagaacccttcaacaat 2103047  T

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