View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21545_low_3 (Length: 578)
Name: NF21545_low_3
Description: NF21545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21545_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 19 - 569
Target Start/End: Original strand, 53819743 - 53820291
Alignment:
| Q |
19 |
agaagaccccctcatgcaataaatatgggaaccgnnnnnnnaactgtgatccttttacaagctgtatatatatgttaatgttatgcataaattcaacata |
118 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53819743 |
agaagaccccctcatgcaataaatatgggaaccgtttttttaactgtgatccttttacaagctgtatatatatgttaatgttatgcataaattcaacata |
53819842 |
T |
|
| Q |
119 |
ctgttcattcaaattcatttctaaccaattcagggtaaaattaataccgctaatgtcaatcattaagtactgatagggaaaaaattctaagcgctgttat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53819843 |
ctgttcattcaaattcatttctaaccaattcagggtaaaattaataccgctaatgtcaatcattaagtactgatagggaaaaaattctaagcgctgttat |
53819942 |
T |
|
| Q |
219 |
ctgagttctgaattttgcatgtatatgatatgataactaccaatctaccatgagtaaaaaaattgataaaaagaatattgttatatatttttaatcaacn |
318 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53819943 |
ctgagttctgaattttgcatgtatatgatatgttaactaccaatctaccatgagtaaaaaaattgataaaaagaatattgttatatatttttaatcaac- |
53820041 |
T |
|
| Q |
319 |
nnnnnnnnnnnnngaacaaaactatctactgcgacaaggtaagagtattgagcagtagaaaacgtgaattgatcaaagccctgaaaactttgtcactaac |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53820042 |
-aaaaaaaaaaaagaacaaaactatctactgcgacaaggtaagagtattgagcagtagaaaacgtgaattgatcaaagccctgaaaactttgtcactaac |
53820140 |
T |
|
| Q |
419 |
actttcaataccacaaatattttcctctaaatcacgcattctcttcaaaaccgatctcacttcttcatctcctttctttttcaaattcccaatattttca |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53820141 |
actttcaataccacaaatattttcctctaaatcacgcattctcttcaaaaccgatctcacttcttcatctcctttctttttcaaattcccaatattttca |
53820240 |
T |
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| Q |
519 |
acctcattcaaaaccttctgaatttcttcaatcccttccaactccttcttc |
569 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53820241 |
acctcattcaaaaccttctgaatttcttcaatcccttctaactccttcttc |
53820291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 415 - 517
Target Start/End: Complemental strand, 32337290 - 32337189
Alignment:
| Q |
415 |
taacactttcaataccacaaatattttcctctaaatcacgcattctcttcaaaaccgatctcacttcttcatctcctttctttttcaaattcccaatatt |
514 |
Q |
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||||||||| |||||| || ||| ||| | | |||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32337290 |
taacacttttaataccgcacatacattcttgtgaatctcgcatcctcttcaaaacc-atctcacttcttcatcttctttctttttcaaattcccaatatt |
32337192 |
T |
|
| Q |
515 |
ttc |
517 |
Q |
| |
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||| |
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|
| T |
32337191 |
ttc |
32337189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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