View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21545_low_4 (Length: 570)
Name: NF21545_low_4
Description: NF21545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21545_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 19 - 341
Target Start/End: Complemental strand, 44525219 - 44524897
Alignment:
| Q |
19 |
catagtttgttgttgtactnnnnnnntgttttgtctgtgtctattattatgtatgcagataattgttttggaggaaccaaaagaaaatctttataactac |
118 |
Q |
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| T |
44525219 |
catagtttgttgttgtactaaaaaaatgttttatctgtgtctattattatgtatgcagataattgttttggaggaaccaaaagaaaatctttataactac |
44525120 |
T |
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| Q |
119 |
accgaggaggtgaacaaaataatagatagaagaccttttgatcttttggtatgtaatgtttgtccataagatatttgaacaaaaagataccattaaaagg |
218 |
Q |
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| T |
44525119 |
accgaggaggtgaacaaaataatagatagaagaccttttgatcttttggtatgtaatgtttgtccataagatatttgaacaaaaagataccattaaaagg |
44525020 |
T |
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| Q |
219 |
acatttttatagtttagttttgcatgagatttgtttcttgagtaatacacattaatatagttccctacttctcctgtctgtcacaggtgattctgaatcc |
318 |
Q |
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| T |
44525019 |
acatttttatagtttagttttgcatgagatttgttacttgagtaatacacattaatatagttccctacttctcctgactgtcacaggtgattctgaatcc |
44524920 |
T |
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| Q |
319 |
caagctaaagatcaagagcaaca |
341 |
Q |
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| T |
44524919 |
caagctaaagatcaagagcaaca |
44524897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 410 - 563
Target Start/End: Complemental strand, 44524827 - 44524676
Alignment:
| Q |
410 |
gtttcaaaactgacaagccgtttgttcatgctcatattttggaattgtgtatttcttcattgactatttaaaatgccagtctaaactcttgatagtatat |
509 |
Q |
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| T |
44524827 |
gtttcaaaactgacaagcc--ttgttcatgctcatattttggaattgtgtatttcttcattgaatatttaaaatgccagtctaaactcttgatagtatat |
44524730 |
T |
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| Q |
510 |
tgttagccctttctttagcgatggcttgaaatttcatgagaccgggttcatttc |
563 |
Q |
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| T |
44524729 |
tgttagccctttctttagcgatggcttgaaatttcatgagactgggttcttttc |
44524676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 411 - 548
Target Start/End: Complemental strand, 44527992 - 44527855
Alignment:
| Q |
411 |
tttcaaaactgacaagccgtttgttcatgctcatattttggaattgtgtatttcttcattgactatttaaaatgccagtctaaactcttgatagtatatt |
510 |
Q |
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| T |
44527992 |
tttcaaaactgacatgccatttgttcatggtcatatttaggaatgttgcaaatcttggtttaatatttaaaatgtcagtctaaattcttgatggtacact |
44527893 |
T |
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| Q |
511 |
gttagccctttctttagcgatggcttgaaatttcatga |
548 |
Q |
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| T |
44527892 |
gttagccctttctttggtgatggcttaaaatttcatga |
44527855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 302 - 345
Target Start/End: Complemental strand, 44528116 - 44528073
Alignment:
| Q |
302 |
caggtgattctgaatcccaagctaaagatcaagagcaacaggac |
345 |
Q |
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| T |
44528116 |
caggtgattctgaatcccaaattaaagaacaagagcaacaggac |
44528073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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