View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21545_low_5 (Length: 539)

Name: NF21545_low_5
Description: NF21545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21545_low_5
NF21545_low_5
[»] chr5 (6 HSPs)
chr5 (19-529)||(1587223-1587733)
chr5 (183-529)||(1590654-1591000)
chr5 (289-501)||(1580751-1580963)
chr5 (289-501)||(1603852-1604064)
chr5 (27-245)||(1581034-1581243)
chr5 (27-245)||(1603572-1603781)
[»] chr3 (1 HSPs)
chr3 (19-529)||(19270052-19270583)
[»] chr7 (2 HSPs)
chr7 (200-451)||(39615906-39616175)
chr7 (470-517)||(39616233-39616280)


Alignment Details
Target: chr5 (Bit Score: 454; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 19 - 529
Target Start/End: Complemental strand, 1587733 - 1587223
Alignment:
Q  19 ataacatcacctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgct 118  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587733 ataacatcacctggttattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgct 1587634  T
Q  119 cacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtccaac 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1587633 cacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattgtgaactctctaaaagaagggtccaac 1587534  T
Q  219 acgatcacttctaaaccaaccggtttatcactttcatccttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgatttt 318  Q
    ||  |||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587533 acagtcacttctaaaccatcctgtttattactttcatccttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgatttt 1587434  T
Q  319 ggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaa 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587433 ggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggcaa 1587334  T
Q  419 tattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtctttggtttaactcttctttccacataagacatgctg 518  Q
    |||||||||||||||||||||||||| |||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587333 tattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggtttaactcttctttccacataagacatgctg 1587234  T
Q  519 ctaccttcatc 529  Q
    |||||||||||    
T  1587233 ctaccttcatc 1587223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 183 - 529
Target Start/End: Original strand, 1590654 - 1591000
Alignment:
Q  183 aaagacattctgaactctctaaaagaagggtccaacacgatcacttctaaaccaaccggtttatcactttcatccttttctatgtcggtgagaaaatcaa 282  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1590654 aaagacattctgaactctctaaaagaagggtccaacacaatcacttctaaaccaaccggtttatcactttcatccttttctatgtcggtgagaaaatcga 1590753  T
Q  283 ctttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccatt 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1590754 ctttgacttctttaagcggcattaaaagacgattttggtcatccctgagatccgacgcagacaattttttacacatgatatttttgatatcagtgccatt 1590853  T
Q  383 aaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtc 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||| |||||||||||||||    
T  1590854 aaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtc 1590953  T
Q  483 tttggtttaactcttctttccacataagacatgctgctaccttcatc 529  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  1590954 tttggtttaacacttctttccgcataaaacatgctgctaccttcatc 1591000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 289 - 501
Target Start/End: Complemental strand, 1580963 - 1580751
Alignment:
Q  289 cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc 388  Q
    |||||||||| | ||||||||||||| ||||||  |  |||||||||||  || ||||||  ||||||||||||| |||||||||||||||||| |||||    
T  1580963 cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactc 1580864  T
Q  389 tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtctttggt 488  Q
    |||||||||| |||| || | ||||||||||||||| |||||||||||||| |||| |||||| ||       |||  ||||||||||||| ||||||||    
T  1580863 tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggt 1580764  T
Q  489 ttaactcttcttt 501  Q
    || ||||||||||    
T  1580763 ttcactcttcttt 1580751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 289 - 501
Target Start/End: Original strand, 1603852 - 1604064
Alignment:
Q  289 cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc 388  Q
    |||||||||| | ||||||||||||| ||||||  |  |||||||||||  || ||||||  ||||||||||||| |||||||||||||||||| |||||    
T  1603852 cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactc 1603951  T
Q  389 tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtctttggt 488  Q
    |||||||||| |||| || | ||||||||||||||| |||||||||||||| |||| |||||| ||       |||  ||||||||||||| ||||||||    
T  1603952 tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggt 1604051  T
Q  489 ttaactcttcttt 501  Q
    || ||||||||||    
T  1604052 ttcactcttcttt 1604064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 245
Target Start/End: Complemental strand, 1581243 - 1581034
Alignment:
Q  27 acctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgctcacaacag 126  Q
    |||| ||| ||||| |||| |||||||||||||  |||||||||||| ||||| ||||||||||||| |||  ||| |||||||||||  |||| ||||     
T  1581243 acctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacat 1581144  T
Q  127 ttttccaaccacgtagaagactgtaat-acttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtccaacacgatca 225  Q
     ||||||| |  ||| ||||||||||  |||| |          || ||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  1581143 gtttccaatcttgtacaagactgtaaagactttt----------gccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatca 1581054  T
Q  226 cttctaaaccaaccggttta 245  Q
    |||||| ||||||| |||||    
T  1581053 cttctataccaaccagttta 1581034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 27 - 245
Target Start/End: Original strand, 1603572 - 1603781
Alignment:
Q  27 acctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgctcacaacag 126  Q
    |||| ||| ||||| |||| |||||||||||||  |||||||||||| ||||| ||||||||||||| |||  ||| |||||||||||  |||| ||||     
T  1603572 acctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacat 1603671  T
Q  127 ttttccaaccacgtagaagactgtaat-acttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtccaacacgatca 225  Q
     ||||||| |  ||| ||||||||||  |||| |          || ||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  1603672 gtttccaatcttgtacaagactgtaaagactttt----------gccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatca 1603761  T
Q  226 cttctaaaccaaccggttta 245  Q
    |||||| ||||||| |||||    
T  1603762 cttctataccaaccagttta 1603781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 19 - 529
Target Start/End: Original strand, 19270052 - 19270583
Alignment:
Q  19 ataacatcacctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgct 118  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  19270052 ataacatcacctgattattgtcgagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttaagttttttacccttttcaaaactatttttgct 19270151  T
Q  119 cacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtccaac 218  Q
    ||||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  19270152 cacaacagttttccaaccatgtacaagactgtaatacttgttaatgcccatgctccacttcctcaacgacattgtgaactctctaaaagaagggtccaac 19270251  T
Q  219 acgatcacttctaaaccaaccggtttatcactttcatcc---------------------ttttctatgtcggtgagaaaatcaactttgacttctttaa 297  Q
    || ||||||||||||||||| ||||| | | ||||||||                     ||||||||||||||||||||||||||||||||||||||||    
T  19270252 acaatcacttctaaaccaactggtttgttattttcatcctttttagttaaagacacgtctttttctatgtcggtgagaaaatcaactttgacttctttaa 19270351  T
Q  298 gcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatctt 397  Q
     || |||||| |||||||||||||||||  |||||| ||| ||| |||||||||||| |||||||| |||||||||||||||||| ||||||||||||||    
T  19270352 tcgacattaatagacgattttggtcatctttgagatttgatgcaaacaattttttacccatgatatatttgatatcagtgccattcaactctttgatctt 19270451  T
Q  398 gttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtctttggtttaactctt 497  Q
    |||||| | |||||||||||||||||||||||| ||||||||||||| |||||| ||       |||||||||||||||||| |||||||||| ||||||    
T  19270452 gttctctatgtgaataggcaatattggtggaggagatgacaaattttccttatcttgtttttttggtttcatcttcttcgtgctctttggtttcactctt 19270551  T
Q  498 ctttccacataagacatgctgctaccttcatc 529  Q
    |||||  | | ||||||||| |||||||||||    
T  19270552 ctttctgcgtgagacatgcttctaccttcatc 19270583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 200 - 451
Target Start/End: Original strand, 39615906 - 39616175
Alignment:
Q  200 tctaaaagaagggtccaacacgatcacttctaaaccaaccggtttatcactttcatccttttc----------------tatgtc--ggtgagaaaatca 281  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||  |||||||||||||                | ||||  |||||||||| ||    
T  39615906 tctaaaataagggtccaacacaatcacttctaaaccaaccggtttatcgttttcatccttttcatctaaagtctccttttctgtcttggtgagaaaacca 39616005  T
Q  282 actttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccat 381  Q
    | || | |||||||||| ||||||||||||||| ||||| | ||   || |||||||||| ||||||| ||  ||||||||| | |||||||||||||||    
T  39616006 agttcgtcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctgatatcagtgccat 39616105  T
Q  382 taaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatc 451  Q
    | ||||| |||||||||||||  || | |||||| |||||||| |||||| | | |||||||||||||||    
T  39616106 tcaactccttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaaatttttcttatc 39616175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 517
Target Start/End: Original strand, 39616233 - 39616280
Alignment:
Q  470 cttcttcgtggtctttggtttaactcttctttccacataagacatgct 517  Q
    |||||||||||||||||||||   |||||||||| |||||||||||||    
T  39616233 cttcttcgtggtctttggtttcgttcttctttccgcataagacatgct 39616280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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