View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21545_low_6 (Length: 533)

Name: NF21545_low_6
Description: NF21545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21545_low_6
NF21545_low_6
[»] chr5 (4 HSPs)
chr5 (236-523)||(15172356-15172643)
chr5 (18-203)||(15172114-15172303)
chr5 (35-202)||(15164293-15164461)
chr5 (90-158)||(15168014-15168082)
[»] chr8 (1 HSPs)
chr8 (23-202)||(29709062-29709243)
[»] chr4 (3 HSPs)
chr4 (23-145)||(55806491-55806610)
chr4 (317-440)||(31458197-31458318)
chr4 (343-453)||(31447909-31448019)
[»] chr7 (2 HSPs)
chr7 (314-449)||(1522722-1522852)
chr7 (242-303)||(1522098-1522159)


Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 236 - 523
Target Start/End: Original strand, 15172356 - 15172643
Alignment:
Q  236 tcaacaagacaagaggaactaacaaatgagaggaaacaattgtggatttctagagaggatactattgaggagcaacaactttgtgaaagtgactgcaagg 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15172356 tcaacaagacaagaggaactaacaaatgagaggaaacaattgtggatttctagagaggatactattgaggagcaacaactttgtgaaagtgactgcaagg 15172455  T
Q  336 tgcacatatttcggatgtgttgaaaaatatagacattagagagcttgcatcttcaaaatctatatcaaatatattcgaatcattaggaagtctactgttg 435  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  15172456 tgcacatatttcggatgtgttgaaaaatatagacattagagagcttgcatcttcgaaatctatatcaaatatattcgaatcattaggaagactactgttg 15172555  T
Q  436 gaatctgaggcagagaatctattattcgatttgtgatcacgcggtaccattatcatgttattcgaagtttgttccttgtattgatatt 523  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  15172556 gaatctgaggcagagaatctattattcgatttgagatcacgcggtacgattattatgttattcgaagtttgttccttgtattgatatt 15172643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 15172114 - 15172303
Alignment:
Q  18 cattatcggttcagatctacaaaactttcccagaacatcatcatcttcatggaacctgattctctcgtctcgcaaactccatgatgtttctcccacaggt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15172114 cattatcggttcagatctacaaaactttcccagaacatcatcattttcatggaacctgattctctcgtctcgcaaactccatgatgtttctcccacaggt 15172213  T
Q  118 atctaaaactaatgtgtatctcagttttcttctatattgaacacca----acggtttgtgaaatttactgttggattgaattcaaatgtg 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||| |||||||||||||||||||||    
T  15172214 atctaaaactaatgtgtatctcagttttcttctatattgaacaccaacgtacggtttgtgaaatttaccgttggattgaattcaaatgtg 15172303  T

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Target: chr5; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 35 - 202
Target Start/End: Original strand, 15164293 - 15164461
Alignment:
Q  35 tacaaaactttcccagaacatcatcatcttcatggaacctgattctctcgtctcgcaaactccatgatgtttctcccacaggtatctaaaactaatgtgt 134  Q
    |||||||||||| ||||||||| ||   ||||||||| |||||||||||||| |||||||||||||||| |||| || |||||| |||||||||||||||    
T  15164293 tacaaaactttcgcagaacatcgtc---ttcatggaatctgattctctcgtcccgcaaactccatgatgcttcttccgcaggtaactaaaactaatgtgt 15164389  T
Q  135 atctcagttttcttctat----attgaacaccaacggtttgtgaaatttactgttggattgaattcaaatgt 202  Q
    ||| ||||||||||||||    | ||||||| ||| ||||||||||||||||||| || | |||||||||||    
T  15164390 atcacagttttcttctattttgaatgaacacaaactgtttgtgaaatttactgttagacttaattcaaatgt 15164461  T

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Target: chr5; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 15168014 - 15168082
Alignment:
Q  90 caaactccatgatgtttctcccacaggtatctaaaactaatgtgtatctcagttttcttctatattgaa 158  Q
    |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15168014 caaactccatgatgcttcttccacaggtatctaaaactaatgtgtatctcagttttcttctatattgaa 15168082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 29709062 - 29709243
Alignment:
Q  23 tcggttcagatctacaaaactttcccagaacatcatcatcttcatggaacctgattctctcgtctcgcaaactccatgatgtttctcccacaggtatcta 122  Q
    ||||||||||| |||||||||||| |||||||||   |||||||||||||||||||||||| || |||||||||||||||| |||| |||||||||||||    
T  29709062 tcggttcagatatacaaaactttcgcagaacatc---atcttcatggaacctgattctctcctcccgcaaactccatgatgcttcttccacaggtatcta 29709158  T
Q  123 aaactaatgtgtatctcagttttcttctatat-----tgaacaccaacggtttgtgaaatttactgttggattgaattcaaatgt 202  Q
    ||||||||| |||||| |||||||||||||||     |||||||| || |||||||||||||||||||| | | |||||||||||    
T  29709159 aaactaatgcgtatcttagttttcttctatattataatgaacaccgactgtttgtgaaatttactgttgtactcaattcaaatgt 29709243  T

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Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 55806610 - 55806491
Alignment:
Q  23 tcggttcagatctacaaaactttcccagaacatcatcatcttcatggaacctgattctctcgtctcgcaaactccatgatgtttctcccacaggtatcta 122  Q
    |||||||||||||||||||||||| ||||||||||||   ||||||||||||||||||||| || |||||||||||||||| |||| | |||||||||||    
T  55806610 tcggttcagatctacaaaactttcgcagaacatcatc---ttcatggaacctgattctctcctcccgcaaactccatgatgcttcttctacaggtatcta 55806514  T
Q  123 aaactaatgtgtatctcagtttt 145  Q
    ||||||||| |||||| ||||||    
T  55806513 aaactaatgcgtatcttagtttt 55806491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 317 - 440
Target Start/End: Original strand, 31458197 - 31458318
Alignment:
Q  317 tgtgaaagtgactgcaaggtgcacatatttcggatgtgttgaaaaatatagacattagagagcttgcatcttcaaaatctatatcaaatatattcgaatc 416  Q
    |||||||||||| |||||   |||| |||| ||| |||||||||||||||||||| | | |||||  |||| ||||||||||||||||||||||| ||||    
T  31458197 tgtgaaagtgaccgcaaga--cacagattttggacgtgttgaaaaatatagacataacaaagcttaaatctgcaaaatctatatcaaatatattccaatc 31458294  T
Q  417 attaggaagtctactgttggaatc 440  Q
    ||| ||||| |||||| |||||||    
T  31458295 attgggaaggctactgctggaatc 31458318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 343 - 453
Target Start/End: Original strand, 31447909 - 31448019
Alignment:
Q  343 atttcggatgtgttgaaaaatatagacattagagagcttgcatcttcaaaatctatatcaaatatattcgaatcattaggaagtctactgttggaatctg 442  Q
    |||| ||| ||||||||||||||||||||   | ||||| ||||  ||||| ||||||||||||||||| |||  ||||||||  ||||| ||||||| |    
T  31447909 attttggacgtgttgaaaaatatagacatggaaaagcttacatcggcaaaacctatatcaaatatattccaattgttaggaaggttactgctggaatcag 31448008  T
Q  443 aggcagagaat 453  Q
    | || ||||||    
T  31448009 atgcggagaat 31448019  T

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Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 314 - 449
Target Start/End: Original strand, 1522722 - 1522852
Alignment:
Q  314 ctttgtgaaagtgactgcaaggtgcacatatttcggatgtgttgaaaaatatagacattagagagcttgcatcttcaaaatctatatcaaatatattcga 413  Q
    ||||||||||||||  ||||||   ||| ||||||||||| | |||||||| | |||||| |||| ||||   ||||||||||||||||||||||||  |    
T  1522722 ctttgtgaaagtgatcgcaagga--acagatttcggatgtttcgaaaaatacaaacattacagagtttgc---ttcaaaatctatatcaaatatattaaa 1522816  T
Q  414 atcattaggaagtctactgttggaatctgaggcaga 449  Q
    |||||||||||| |||| |||| |||||||||||||    
T  1522817 atcattaggaaggctacagttgaaatctgaggcaga 1522852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 242 - 303
Target Start/End: Original strand, 1522098 - 1522159
Alignment:
Q  242 agacaagaggaactaacaaatgagaggaaacaattgtggatttctagagaggatactattga 303  Q
    ||||||||||||||||||| ||||||||||| || ||||||||||||||||||||| |||||    
T  1522098 agacaagaggaactaacaattgagaggaaacgatcgtggatttctagagaggataccattga 1522159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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