View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21546_high_2 (Length: 619)

Name: NF21546_high_2
Description: NF21546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21546_high_2
NF21546_high_2
[»] chr7 (10 HSPs)
chr7 (560-602)||(46758303-46758345)
chr7 (560-599)||(13702089-13702128)
chr7 (560-599)||(46645773-46645812)
chr7 (561-596)||(18503448-18503483)
chr7 (558-599)||(10244854-10244895)
chr7 (561-602)||(42798285-42798326)
chr7 (558-602)||(12615812-12615856)
chr7 (558-598)||(21402793-21402833)
chr7 (281-313)||(24890520-24890552)
chr7 (558-602)||(35683092-35683136)
[»] chr2 (23 HSPs)
chr2 (558-602)||(44898447-44898491)
chr2 (560-599)||(5947930-5947969)
chr2 (560-599)||(20497162-20497201)
chr2 (560-595)||(15939357-15939392)
chr2 (564-599)||(23984194-23984229)
chr2 (560-599)||(32854596-32854635)
chr2 (560-598)||(7717572-7717610)
chr2 (560-602)||(18254650-18254692)
chr2 (558-596)||(18862319-18862357)
chr2 (562-599)||(17777132-17777169)
chr2 (558-599)||(28153107-28153148)
chr2 (558-599)||(28194696-28194737)
chr2 (558-599)||(33228898-33228939)
chr2 (558-599)||(33587153-33587194)
chr2 (558-598)||(1844882-1844922)
chr2 (558-602)||(4659469-4659512)
chr2 (558-602)||(11050722-11050766)
chr2 (558-602)||(16040302-16040346)
chr2 (558-602)||(16385007-16385051)
chr2 (558-598)||(33222119-33222159)
chr2 (558-598)||(40473515-40473555)
chr2 (558-590)||(42633480-42633512)
chr2 (558-598)||(44186508-44186548)
[»] chr1 (20 HSPs)
chr1 (560-599)||(18911915-18911954)
chr1 (559-599)||(36860662-36860702)
chr1 (560-599)||(18512542-18512581)
chr1 (558-602)||(12650349-12650393)
chr1 (558-590)||(29527186-29527218)
chr1 (560-600)||(42735944-42735984)
chr1 (560-599)||(12613241-12613280)
chr1 (558-596)||(27579439-27579477)
chr1 (560-597)||(5431006-5431043)
chr1 (558-599)||(7180579-7180620)
chr1 (558-599)||(12048089-12048130)
chr1 (558-599)||(21265720-21265761)
chr1 (565-602)||(33229649-33229686)
chr1 (558-602)||(6129998-6130042)
chr1 (560-596)||(8741540-8741576)
chr1 (558-598)||(8780833-8780873)
chr1 (558-602)||(22592546-22592590)
chr1 (558-598)||(27178674-27178713)
chr1 (558-598)||(28564310-28564350)
chr1 (560-596)||(41998415-41998451)
[»] chr5 (17 HSPs)
chr5 (561-599)||(23937901-23937939)
chr5 (558-599)||(8241114-8241155)
chr5 (560-599)||(3741018-3741057)
chr5 (562-599)||(7545367-7545404)
chr5 (558-599)||(16280310-16280351)
chr5 (560-596)||(6734706-6734742)
chr5 (560-599)||(3821388-3821427)
chr5 (561-596)||(39799998-39800033)
chr5 (558-596)||(6167279-6167317)
chr5 (558-592)||(38097344-38097378)
chr5 (558-599)||(16789134-16789175)
chr5 (558-599)||(41179768-41179809)
chr5 (558-602)||(6558862-6558906)
chr5 (560-596)||(7443406-7443442)
chr5 (558-598)||(15241461-15241501)
chr5 (560-599)||(17891825-17891865)
chr5 (558-598)||(20282859-20282899)
[»] chr8 (23 HSPs)
chr8 (560-599)||(31024358-31024397)
chr8 (560-599)||(33810704-33810743)
chr8 (560-599)||(44053407-44053446)
chr8 (560-598)||(34873151-34873189)
chr8 (560-598)||(36035146-36035184)
chr8 (558-602)||(2626030-2626074)
chr8 (558-602)||(7763904-7763948)
chr8 (560-596)||(13105158-13105194)
chr8 (558-597)||(3912129-3912168)
chr8 (560-599)||(37708755-37708794)
chr8 (563-598)||(40740589-40740624)
chr8 (564-602)||(26217852-26217890)
chr8 (558-599)||(5328532-5328573)
chr8 (558-599)||(10568149-10568190)
chr8 (558-599)||(17027846-17027887)
chr8 (558-599)||(17558282-17558323)
chr8 (558-595)||(21548462-21548499)
chr8 (558-599)||(34894433-34894474)
chr8 (558-599)||(37290986-37291027)
chr8 (558-602)||(10587242-10587286)
chr8 (560-596)||(13059144-13059180)
chr8 (558-602)||(31450922-31450966)
chr8 (560-596)||(38730522-38730558)
[»] chr6 (18 HSPs)
chr6 (560-599)||(18904329-18904368)
chr6 (560-602)||(1368154-1368196)
chr6 (558-602)||(2816951-2816995)
chr6 (560-596)||(32621549-32621585)
chr6 (559-599)||(2251902-2251943)
chr6 (558-599)||(8297691-8297732)
chr6 (558-599)||(13158674-13158715)
chr6 (558-599)||(13163530-13163571)
chr6 (558-595)||(24878179-24878216)
chr6 (558-599)||(30705024-30705065)
chr6 (558-599)||(31104946-31104986)
chr6 (558-598)||(216271-216311)
chr6 (558-602)||(361224-361268)
chr6 (560-596)||(3709926-3709962)
chr6 (559-595)||(9416297-9416333)
chr6 (560-596)||(28021299-28021335)
chr6 (560-596)||(32142003-32142039)
chr6 (558-598)||(33646900-33646940)
[»] chr4 (21 HSPs)
chr4 (560-599)||(36099150-36099189)
chr4 (558-596)||(624547-624585)
chr4 (558-598)||(47929310-47929350)
chr4 (558-598)||(54534891-54534931)
chr4 (560-599)||(30305863-30305902)
chr4 (561-599)||(28715754-28715792)
chr4 (558-596)||(54215828-54215866)
chr4 (558-599)||(2222603-2222644)
chr4 (558-599)||(3036020-3036061)
chr4 (558-599)||(11375854-11375895)
chr4 (558-599)||(30057286-30057327)
chr4 (558-599)||(38848086-38848126)
chr4 (561-602)||(42395288-42395329)
chr4 (558-599)||(46903394-46903435)
chr4 (558-599)||(49056839-49056880)
chr4 (561-597)||(33933707-33933743)
chr4 (558-602)||(42134422-42134466)
chr4 (564-596)||(43539879-43539911)
chr4 (563-599)||(45303954-45303990)
chr4 (558-602)||(46562704-46562748)
chr4 (558-602)||(51777905-51777948)
[»] chr3 (32 HSPs)
chr3 (560-599)||(14795175-14795214)
chr3 (560-599)||(25883955-25883994)
chr3 (560-599)||(27329899-27329938)
chr3 (560-599)||(51879159-51879198)
chr3 (560-596)||(9114078-9114114)
chr3 (558-598)||(29559639-29559679)
chr3 (560-599)||(41710647-41710686)
chr3 (560-599)||(44625192-44625231)
chr3 (560-599)||(46767407-46767446)
chr3 (558-595)||(4808010-4808047)
chr3 (558-599)||(17602641-17602682)
chr3 (558-599)||(22472279-22472320)
chr3 (558-599)||(25279024-25279065)
chr3 (558-599)||(31587011-31587052)
chr3 (558-599)||(32256519-32256560)
chr3 (558-599)||(34102576-34102617)
chr3 (558-599)||(39719999-39720040)
chr3 (558-599)||(41936372-41936413)
chr3 (558-599)||(49443389-49443429)
chr3 (558-599)||(53432702-53432743)
chr3 (558-602)||(3894605-3894649)
chr3 (558-602)||(7270016-7270060)
chr3 (560-596)||(8488494-8488530)
chr3 (560-596)||(8497086-8497122)
chr3 (558-602)||(10482818-10482862)
chr3 (558-602)||(11250536-11250580)
chr3 (557-589)||(33248930-33248962)
chr3 (560-596)||(39709105-39709141)
chr3 (558-590)||(42334092-42334124)
chr3 (566-598)||(42359871-42359903)
chr3 (558-598)||(50089335-50089375)
chr3 (558-602)||(50675707-50675751)
[»] scaffold0141 (1 HSPs)
scaffold0141 (558-601)||(39864-39907)
[»] scaffold0049 (1 HSPs)
scaffold0049 (558-601)||(74905-74948)
[»] scaffold0117 (1 HSPs)
scaffold0117 (558-599)||(18444-18485)
[»] scaffold0088 (1 HSPs)
scaffold0088 (558-599)||(10791-10832)
[»] scaffold0003 (1 HSPs)
scaffold0003 (558-599)||(315713-315754)
[»] scaffold0031 (1 HSPs)
scaffold0031 (558-602)||(93947-93991)


Alignment Details
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 560 - 602
Target Start/End: Complemental strand, 46758345 - 46758303
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46758345 gagctcacacattttaaatgtggaggagtggggtgtccggagt 46758303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 13702128 - 13702089
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13702128 gagctcacacattttaaatgtggaggagtggggtgtccgg 13702089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 46645812 - 46645773
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46645812 gagctcacacattttaaatgtggaggagtggggtgtccgg 46645773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 561 - 596
Target Start/End: Original strand, 18503448 - 18503483
Alignment:
Q  561 agctcacacattttaaatgtggaggagtggggtgtc 596  Q
    |||||||||||||||||||||||| |||||||||||    
T  18503448 agctcacacattttaaatgtggagaagtggggtgtc 18503483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 10244854 - 10244895
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  10244854 tagagctcacacaatttaattgtggagaagtggggtgtccgg 10244895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 602
Target Start/End: Original strand, 42798285 - 42798326
Alignment:
Q  561 agctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    |||||||||||||||||||||||| ||| |||||| ||||||    
T  42798285 agctcacacattttaaatgtggagaagtcgggtgttcggagt 42798326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 12615856 - 12615812
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| ||||||| || ||||||||||||||    
T  12615856 tagagctcacacaatttaattgtggagaagcggggtgtccggagt 12615812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 21402793 - 21402833
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    ||||||||||||||||||||||||||| |||| ||| ||||    
T  21402793 tagagctcacacattttaaatgtggagaagtgaggtctccg 21402833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 24890552 - 24890520
Alignment:
Q  281 gaaggtaagtaaagtctgaccaagaattattcc 313  Q
    |||||||||||||||||||||||||||| ||||    
T  24890552 gaaggtaagtaaagtctgaccaagaattgttcc 24890520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 35683092 - 35683136
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| ||||||| ||||| |||||||||||    
T  35683092 tagagctcacacaatttaattgtggagaagtggagtgtccggagt 35683136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 44898447 - 44898491
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  44898447 tagagctcacacattttaaatgtggagaagtggggtgtccggagt 44898491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 5947969 - 5947930
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  5947969 gagctcacacattttaaatgtggaggagtggggtgtccgg 5947930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 599
Target Start/End: Original strand, 20497162 - 20497201
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  20497162 gagctcacacattttaaatgtggagaagtggggtgtccgg 20497201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 595
Target Start/End: Complemental strand, 15939392 - 15939357
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgt 595  Q
    ||||||||||||||||||||||||| ||||||||||    
T  15939392 gagctcacacattttaaatgtggagaagtggggtgt 15939357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 564 - 599
Target Start/End: Original strand, 23984194 - 23984229
Alignment:
Q  564 tcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||| ||||||||||||||    
T  23984194 tcacacattttaaatgtggagaagtggggtgtccgg 23984229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 32854635 - 32854596
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  32854635 gagctcacacattttaaatgtggagaagtagggtgtccgg 32854596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 598
Target Start/End: Original strand, 7717572 - 7717610
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    ||||||||||||||||||||||||| ||||| |||||||    
T  7717572 gagctcacacattttaaatgtggagaagtggagtgtccg 7717610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 560 - 602
Target Start/End: Complemental strand, 18254692 - 18254650
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    |||||||||||||||||||||| || ||||||||||| |||||    
T  18254692 gagctcacacattttaaatgtgaagaagtggggtgtctggagt 18254650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 558 - 596
Target Start/End: Complemental strand, 18862357 - 18862319
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  18862357 tagagctcacacattttaaatgtggagaagtggagtgtc 18862319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 562 - 599
Target Start/End: Original strand, 17777132 - 17777169
Alignment:
Q  562 gctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  17777132 gctcgcacattttaaatgtggagaagtggggtgtccgg 17777169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 28153107 - 28153148
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  28153107 tagagctcacacaatttaattgtggagaagtggggtgtccgg 28153148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 28194737 - 28194696
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  28194737 tagagctcacacaatttaattgtggagaagtggggtgtccgg 28194696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 33228898 - 33228939
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  33228898 tagagctcacacaatttaattgtggagaagtggggtgtccgg 33228939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 33587194 - 33587153
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||| ||||||||| ||||| ||||||||||||||    
T  33587194 tagagctcacatattttaaatatggagaagtggggtgtccgg 33587153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 1844922 - 1844882
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    ||||||||||||| ||||| ||||||| |||||||||||||    
T  1844922 tagagctcacacaatttaattgtggagaagtggggtgtccg 1844882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 4659512 - 4659469
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    |||||||||||||| | |||||||||| |||||||||||||||||    
T  4659512 tagagctcacacatat-aaatgtggagaagtggggtgtccggagt 4659469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 11050722 - 11050766
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| | ||||| |||||||||||||||||    
T  11050722 tagagctcacacaatttaattatggagaagtggggtgtccggagt 11050766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 16040346 - 16040302
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| ||||||| |||||| ||||||||||    
T  16040346 tagagctcacacaatttaattgtggagaagtgggatgtccggagt 16040302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 16385007 - 16385051
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| ||||||| ||||| |||||||||||    
T  16385007 tagagctcacacaatttaattgtggagaagtggagtgtccggagt 16385051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 33222119 - 33222159
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    ||||||||||||| ||||| ||||||| |||||||||||||    
T  33222119 tagagctcacacagtttaattgtggagaagtggggtgtccg 33222159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 40473515 - 40473555
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    ||||||||||||| ||||| ||||||| |||||||||||||    
T  40473515 tagagctcacacaatttaattgtggagaagtggggtgtccg 40473555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 590
Target Start/End: Original strand, 42633480 - 42633512
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtgg 590  Q
    |||||||||||||||||||||||||| ||||||    
T  42633480 tagagctcacacattttaaatgtggatgagtgg 42633512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 44186548 - 44186508
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    ||||||||||||| ||||| ||||||| |||||||||||||    
T  44186548 tagagctcacacaatttaattgtggagaagtggggtgtccg 44186508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 18911954 - 18911915
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  18911954 gagctcacacattttaaatgtggaggagtggggtgtccgg 18911915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 559 - 599
Target Start/End: Complemental strand, 36860702 - 36860662
Alignment:
Q  559 agagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  36860702 agagctcacacattttaaatgtggagaagtggggtgtccgg 36860662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 599
Target Start/End: Original strand, 18512542 - 18512581
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  18512542 gagctcacacattttaaatgtggagaagtggggtgtccgg 18512581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 12650349 - 12650393
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||    
T  12650349 tagagctcacacaatttaattgtggagaagtggggtgtccggagt 12650393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 590
Target Start/End: Complemental strand, 29527218 - 29527186
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtgg 590  Q
    |||||||||||||||||||||||||||||||||    
T  29527218 tagagctcacacattttaaatgtggaggagtgg 29527186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 600
Target Start/End: Complemental strand, 42735984 - 42735944
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgga 600  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  42735984 gagctcacacattttaaatgtagagaagtggggtgtccgga 42735944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 12613280 - 12613241
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||| ||| ||||||||||||||    
T  12613280 gagctcacacattttaaatgtagagaagtggggtgtccgg 12613241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 558 - 596
Target Start/End: Original strand, 27579439 - 27579477
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||||||||||||||||||| | |||||||||    
T  27579439 tagagctcacacattttaaatgtggagaaatggggtgtc 27579477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 597
Target Start/End: Original strand, 5431006 - 5431043
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtcc 597  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  5431006 gagctcacacattttaaatgtggataagtggggtgtcc 5431043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 7180579 - 7180620
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  7180579 tagagctcacacaatttaattgtggagaagtggggtgtccgg 7180620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 12048089 - 12048130
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  12048089 tagagctcacacaatttaattgtggagaagtggggtgtccgg 12048130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 21265761 - 21265720
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  21265761 tagagctcacacaatttaattgtggagaagtggggtgtccgg 21265720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 565 - 602
Target Start/End: Original strand, 33229649 - 33229686
Alignment:
Q  565 cacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  33229649 cacacattttaaatgtggagaagtggggtgttcggagt 33229686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 6129998 - 6130042
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| ||||||| ||||| |||||||||||    
T  6129998 tagagctcacacaatttaattgtggagaagtggagtgtccggagt 6130042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 596
Target Start/End: Complemental strand, 8741576 - 8741540
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  8741576 gagctcacacattataaatgtggagaagtggggtgtc 8741540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 8780873 - 8780833
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    |||| ||| |||||||||||||||||| |||||||||||||    
T  8780873 tagatctcgcacattttaaatgtggagaagtggggtgtccg 8780833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 22592546 - 22592590
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    |||| ||||||||| |||||| ||||| |||||||||||||||||    
T  22592546 tagaactcacacatattaaatatggagaagtggggtgtccggagt 22592590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 27178674 - 27178713
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    ||||||||||||||||| ||||||||| |||||||||||||    
T  27178674 tagagctcacacatttt-aatgtggagaagtggggtgtccg 27178713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 28564310 - 28564350
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    ||||||||||||| ||||| ||||||| |||||||||||||    
T  28564310 tagagctcacacaatttaattgtggagaagtggggtgtccg 28564350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 596
Target Start/End: Complemental strand, 41998451 - 41998415
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  41998451 gagctcacacattttaaatgtggagaagtagggtgtc 41998415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 561 - 599
Target Start/End: Original strand, 23937901 - 23937939
Alignment:
Q  561 agctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    |||||||||||||||||||||||||||||||||||||||    
T  23937901 agctcacacattttaaatgtggaggagtggggtgtccgg 23937939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 8241155 - 8241114
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  8241155 tagagctcacacattttaaatgtggagaagtggggtgtccgg 8241114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 3741057 - 3741018
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  3741057 gagctcacacattttaaatgtggagaagtggggtgtccgg 3741018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 562 - 599
Target Start/End: Original strand, 7545367 - 7545404
Alignment:
Q  562 gctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  7545367 gctcacacattttaaatgtggagaagtggggtgtccgg 7545404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 16280351 - 16280310
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||||||||||||||||| ||||||||    
T  16280351 tagagctcacacaatttaaatgtggaggagtggagtgtccgg 16280310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 596
Target Start/End: Original strand, 6734706 - 6734742
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||||||||||||||||| |||||||||||    
T  6734706 gagctcacacattttaaatgtggagaagtggggtgtc 6734742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 599
Target Start/End: Original strand, 3821388 - 3821427
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| |||||||| |||||    
T  3821388 gagctcacacattttaaatgtggagaagtggggtttccgg 3821427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 561 - 596
Target Start/End: Original strand, 39799998 - 39800033
Alignment:
Q  561 agctcacacattttaaatgtggaggagtggggtgtc 596  Q
    |||||||||||||||||||||||| |||||||||||    
T  39799998 agctcacacattttaaatgtggagaagtggggtgtc 39800033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 558 - 596
Target Start/End: Complemental strand, 6167317 - 6167279
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  6167317 tagagctcacacattttaaatgtggagaagtgaggtgtc 6167279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 558 - 592
Target Start/End: Complemental strand, 38097378 - 38097344
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtgggg 592  Q
    ||||||||||||||||||||||||||| |||||||    
T  38097378 tagagctcacacattttaaatgtggagaagtgggg 38097344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 16789175 - 16789134
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  16789175 tagagctcacacaatttaattgtggagaagtggggtgtccgg 16789134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 41179768 - 41179809
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||||||||||| ||||| ||||||||    
T  41179768 tagagctcacacaatttaaatgtggagaagtggagtgtccgg 41179809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 6558906 - 6558862
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| ||||||| ||| |||||||||||||    
T  6558906 tagagctcacacaatttaattgtggagaagtagggtgtccggagt 6558862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 596
Target Start/End: Complemental strand, 7443442 - 7443406
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  7443442 gagctcacacattataaatgtggagaagtggggtgtc 7443406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 15241501 - 15241461
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    ||||||||||||| ||||| ||||||| |||||||||||||    
T  15241501 tagagctcacacaatttaattgtggagaagtggggtgtccg 15241461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 599
Target Start/End: Original strand, 17891825 - 17891865
Alignment:
Q  560 gagctcacacattttaaa-tgtggaggagtggggtgtccgg 599  Q
    |||||||||||||||||| ||||||| ||||||||||||||    
T  17891825 gagctcacacattttaaaatgtggagaagtggggtgtccgg 17891865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 20282859 - 20282899
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    ||||||||||||||||||||||||||  ||||| |||||||    
T  20282859 tagagctcacacattttaaatgtggaaaagtggtgtgtccg 20282899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 31024397 - 31024358
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  31024397 gagctcacacattttaaatgtggagaagtggggtgtccgg 31024358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 33810743 - 33810704
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  33810743 gagctcacacattttaaatgtggagaagtggggtgtccgg 33810704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 599
Target Start/End: Original strand, 44053407 - 44053446
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  44053407 gagctcacacattttaaatgtggagaagtggggtgtccgg 44053446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 560 - 598
Target Start/End: Complemental strand, 34873189 - 34873151
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  34873189 gagctcacacattttaaatgtggagaagtggggtgtccg 34873151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 560 - 598
Target Start/End: Original strand, 36035146 - 36035184
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  36035146 gagctcacacattttaaatgtggagaagtggggtgtccg 36035184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 2626030 - 2626074
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||    
T  2626030 tagagctcacacaatttaattgtggagaagtggggtgtccggagt 2626074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 7763904 - 7763948
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||    
T  7763904 tagagctcacacaatttaattgtggagaagtggggtgtccggagt 7763948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 596
Target Start/End: Complemental strand, 13105194 - 13105158
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||||||||||||||||| |||||||||||    
T  13105194 gagctcacacattttaaatgtggagaagtggggtgtc 13105158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 558 - 597
Target Start/End: Original strand, 3912129 - 3912168
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtcc 597  Q
    ||||||||||||||| ||||||||||| ||||||||||||    
T  3912129 tagagctcacacattataaatgtggagaagtggggtgtcc 3912168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 37708794 - 37708755
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  37708794 gagctcacacattttaaatgtggagaagtgggatgtccgg 37708755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 563 - 598
Target Start/End: Complemental strand, 40740624 - 40740589
Alignment:
Q  563 ctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    |||||||||||||||||||||| |||||||||||||    
T  40740624 ctcacacattttaaatgtggagaagtggggtgtccg 40740589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 564 - 602
Target Start/End: Complemental strand, 26217890 - 26217852
Alignment:
Q  564 tcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||||||||||| |||| ||||||||||||    
T  26217890 tcacacattttaaatgtggagaagtgaggtgtccggagt 26217852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 5328532 - 5328573
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||| ||||||| |||| |||||||||    
T  5328532 tagagctcacacattttaattgtggagaagtgaggtgtccgg 5328573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 10568190 - 10568149
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  10568190 tagagctcacacaatttaattgtggagaagtggggtgtccgg 10568149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 17027846 - 17027887
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  17027846 tagagctcacacaatttaattgtggagaagtggggtgtccgg 17027887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 17558282 - 17558323
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  17558282 tagagctcacacaatttaattgtggagaagtggggtgtccgg 17558323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 595
Target Start/End: Original strand, 21548462 - 21548499
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgt 595  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  21548462 tagagctcacacattttaattgtggagaagtggggtgt 21548499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 34894474 - 34894433
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  34894474 tagagctcacacaatttaactgtggagaagtggggtgtccgg 34894433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 37291027 - 37290986
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  37291027 tagagctcacacaatttaattgtggagaagtggggtgtccgg 37290986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 10587242 - 10587286
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||| ||| ||||| ||||||| |||||||||||||||||    
T  10587242 tagagctcatacaatttaattgtggagaagtggggtgtccggagt 10587286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 596
Target Start/End: Original strand, 13059144 - 13059180
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    |||| |||||||||||||||||||| |||||||||||    
T  13059144 gagcacacacattttaaatgtggagaagtggggtgtc 13059180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 31450922 - 31450966
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| ||||||| ||||| |||||||||||    
T  31450922 tagagctcacacaatttaattgtggagaagtggagtgtccggagt 31450966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 596
Target Start/End: Original strand, 38730522 - 38730558
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  38730522 gagctcacatattttaaatgtggagaagtggggtgtc 38730558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 18904368 - 18904329
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  18904368 gagctcacacattttaaatgtggagaagtggggtgtccgg 18904329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 560 - 602
Target Start/End: Original strand, 1368154 - 1368196
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||||||||||||||| ||||||||||| |||||    
T  1368154 gagctcacacattttaaatgtggagaagtggggtgtctggagt 1368196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 2816995 - 2816951
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| ||||||| |||||||||||||||||    
T  2816995 tagagctcacacaatttaattgtggagaagtggggtgtccggagt 2816951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 596
Target Start/End: Original strand, 32621549 - 32621585
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||||||||||||||||| |||||||||||    
T  32621549 gagctcacacattttaaatgtggagaagtggggtgtc 32621585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 599
Target Start/End: Complemental strand, 2251943 - 2251902
Alignment:
Q  559 agagctcacacatttt-aaatgtggaggagtggggtgtccgg 599  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  2251943 agagctcacacatttttaaatgtggagaagtggggtgtccgg 2251902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 8297732 - 8297691
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  8297732 tagagctcacacaatttaattgtggagaagtggggtgtccgg 8297691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 13158674 - 13158715
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  13158674 tagagctcacacaatttaattgtggagaagtggggtgtccgg 13158715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 13163530 - 13163571
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  13163530 tagagctcacacaatttaattgtggagaagtggggtgtccgg 13163571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 595
Target Start/End: Original strand, 24878179 - 24878216
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgt 595  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  24878179 tagagctcacacatttgaaatgtggagaagtggggtgt 24878216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 30705065 - 30705024
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  30705065 tagagctcacacaatttaattgtggagaagtggggtgtccgg 30705024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 31104986 - 31104946
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||| ||||||| ||||||||||||||    
T  31104986 tagagctcacacattttaa-tgtggagaagtggggtgtccgg 31104946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 216311 - 216271
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    ||||||||||||| ||||| ||||||| |||||||||||||    
T  216311 tagagctcacacaatttaattgtggagaagtggggtgtccg 216271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 361268 - 361224
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||| ||||||||| ||||| ||||||||||| |||||    
T  361268 tagagctcacatattttaaatatggagaagtggggtgtctggagt 361224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 596
Target Start/End: Complemental strand, 3709962 - 3709926
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    |||||| |||||||||||||||||| |||||||||||    
T  3709962 gagctctcacattttaaatgtggagaagtggggtgtc 3709926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 559 - 595
Target Start/End: Original strand, 9416297 - 9416333
Alignment:
Q  559 agagctcacacattttaaatgtggaggagtggggtgt 595  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  9416297 agagctcacatattttaaatgtggagcagtggggtgt 9416333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 596
Target Start/End: Complemental strand, 28021335 - 28021299
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  28021335 gagctcacacattataaatgtggagaagtggggtgtc 28021299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 596
Target Start/End: Original strand, 32142003 - 32142039
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||||||||||||||||  |||||||||||    
T  32142003 gagctcacacattttaaatgtggaaaagtggggtgtc 32142039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 33646940 - 33646900
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    ||||||||||||| ||||| ||||||| |||||||||||||    
T  33646940 tagagctcacacaatttaattgtggagaagtggggtgtccg 33646900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 599
Target Start/End: Original strand, 36099150 - 36099189
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  36099150 gagctcacacattttaaatgtggagaagtggggtgtccgg 36099189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 558 - 596
Target Start/End: Complemental strand, 624585 - 624547
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  624585 tagagctcacacattttaaatgtggagaagtggggtgtc 624547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 47929350 - 47929310
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    ||||||||||||||||||||||||||| |||||||| ||||    
T  47929350 tagagctcacacattttaaatgtggagaagtggggtttccg 47929310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 598
Target Start/End: Complemental strand, 54534931 - 54534891
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    |||||||||||||| |||||||||||| |||||||||||||    
T  54534931 tagagctcacacatattaaatgtggagaagtggggtgtccg 54534891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 30305902 - 30305863
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  30305902 gagctcacacattttaaatgtggagaagtgaggtgtccgg 30305863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 599
Target Start/End: Complemental strand, 28715792 - 28715754
Alignment:
Q  561 agctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  28715792 agctcacacattttaaatgtggagaagtggagtgtccgg 28715754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 558 - 596
Target Start/End: Complemental strand, 54215866 - 54215828
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  54215866 tagagctcacatattttaaatgtggagaagtggggtgtc 54215828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 2222644 - 2222603
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  2222644 tagagctcacacaatttaattgtggagaagtggggtgtccgg 2222603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 3036020 - 3036061
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  3036020 tagagctcacacaatttaattgtggagaagtggggtgtccgg 3036061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 11375854 - 11375895
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||| ||||||| |||| |||||||||    
T  11375854 tagagctcacacattttaattgtggagaagtgaggtgtccgg 11375895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 30057327 - 30057286
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  30057327 tagagctcacacaatttaattgtggagaagtggggtgtccgg 30057286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 38848086 - 38848126
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  38848086 tagagctcacacattt-aaatgtggagaagtggggtgtccgg 38848126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 561 - 602
Target Start/End: Complemental strand, 42395329 - 42395288
Alignment:
Q  561 agctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    |||||||||| ||||| ||||||| |||||||||||||||||    
T  42395329 agctcacacaatttaattgtggagaagtggggtgtccggagt 42395288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 46903435 - 46903394
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||| |||||| |||| ||||||||||||||    
T  46903435 tagagctcacacattataaatgcggagaagtggggtgtccgg 46903394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 49056880 - 49056839
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  49056880 tagagctcacacaatttaattgtggagaagtggggtgtccgg 49056839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 561 - 597
Target Start/End: Original strand, 33933707 - 33933743
Alignment:
Q  561 agctcacacattttaaatgtggaggagtggggtgtcc 597  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  33933707 agctcacacatattaaatgtggagaagtggggtgtcc 33933743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 42134422 - 42134466
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||| | ||||| ||||||| |||||||||||||||||    
T  42134422 tagagctcacataatttaattgtggagaagtggggtgtccggagt 42134466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 564 - 596
Target Start/End: Complemental strand, 43539911 - 43539879
Alignment:
Q  564 tcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||||||||||||| |||||||||||    
T  43539911 tcacacattttaaatgtggagaagtggggtgtc 43539879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 563 - 599
Target Start/End: Original strand, 45303954 - 45303990
Alignment:
Q  563 ctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  45303954 ctcacacatttttaatgtggagaagtggggtgtccgg 45303990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 46562748 - 46562704
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||| ||| ||||||||| ||||| |||||||||||||||||    
T  46562748 tagagcttacatattttaaatatggagaagtggggtgtccggagt 46562704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 51777948 - 51777905
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    |||||||||||||||| |||||||||| |||||| ||||||||||    
T  51777948 tagagctcacacattt-aaatgtggagaagtgggatgtccggagt 51777905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 14795214 - 14795175
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  14795214 gagctcacacattttaaatgtggagaagtggggtgtccgg 14795175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 599
Target Start/End: Original strand, 25883955 - 25883994
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  25883955 gagctcacacattttaaatgtggagaagtggggtgtccgg 25883994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 599
Target Start/End: Original strand, 27329899 - 27329938
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  27329899 gagctcacacattttaaatgtggagaagtggggtgtccgg 27329938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 51879198 - 51879159
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  51879198 gagctcacacattttaaatgtggagaagtggggtgtccgg 51879159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 560 - 596
Target Start/End: Complemental strand, 9114114 - 9114078
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||||||||||||||||| |||||||||||    
T  9114114 gagctcacacattttaaatgtggagaagtggggtgtc 9114078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 29559639 - 29559679
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  29559639 tagaactcacacattttaaatgtggagaagtggggtgtccg 29559679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 41710686 - 41710647
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| |||| |||||||||    
T  41710686 gagctcacacattttaaatgtggagaagtgaggtgtccgg 41710647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 599
Target Start/End: Original strand, 44625192 - 44625231
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  44625192 gagctcccacattttaaatgtggagaagtggggtgtccgg 44625231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 46767446 - 46767407
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  46767446 gagctcacacattttaaatgtggagaagtgggatgtccgg 46767407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 595
Target Start/End: Original strand, 4808010 - 4808047
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgt 595  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  4808010 tagagctcacacattttaaatgtagagaagtggggtgt 4808047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 17602641 - 17602682
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  17602641 tagagctcacacaatttaattgtggagaagtggggtgtccgg 17602682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 22472279 - 22472320
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  22472279 tagagctcacacaatttaattgtggagaagtggggtgtccgg 22472320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 25279024 - 25279065
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  25279024 tagagctcacacaatttaattgtggagaagtggggtgtccgg 25279065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 31587052 - 31587011
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  31587052 tagagctcacacaatttaattgtggagaagtggggtgtccgg 31587011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 32256519 - 32256560
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  32256519 tagagctcacacaatttaattgtggagaagtggggtgtccgg 32256560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 34102576 - 34102617
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  34102576 tagagctcacacagtttaattgtggagaagtggggtgtccgg 34102617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 39720040 - 39719999
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  39720040 tagagctcacacaatttaattgtggagaagtggggtgtccgg 39719999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 41936372 - 41936413
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  41936372 tagagctcacacaatttaattgtggagaagtggggtgtccgg 41936413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 49443389 - 49443429
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    |||||||||||||||| |||||||||| ||||||||||||||    
T  49443389 tagagctcacacattt-aaatgtggagaagtggggtgtccgg 49443429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 53432702 - 53432743
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  53432702 tagagctcacacaatttaattgtggagaagtggggtgtccgg 53432743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 3894649 - 3894605
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| ||||||| ||||| |||||||||||    
T  3894649 tagagctcacacaatttaattgtggagaagtggagtgtccggagt 3894605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Complemental strand, 7270060 - 7270016
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| ||||||| ||||| |||||||||||    
T  7270060 tagagctcacacaatttaattgtggagaagtggagtgtccggagt 7270016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 596
Target Start/End: Complemental strand, 8488530 - 8488494
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  8488530 gagctcacacattttaaatgtggagaagtgaggtgtc 8488494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 596
Target Start/End: Complemental strand, 8497122 - 8497086
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    |||||| |||||||||||||||||| |||||||||||    
T  8497122 gagctcgcacattttaaatgtggagaagtggggtgtc 8497086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 10482818 - 10482862
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| ||||||| ||||| |||||||||||    
T  10482818 tagagctcacacaatttaattgtggagaagtggagtgtccggagt 10482862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 11250536 - 11250580
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| ||||||| |||||||| ||||||||    
T  11250536 tagagctcacacaatttaattgtggagaagtggggtatccggagt 11250580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 557 - 589
Target Start/End: Complemental strand, 33248962 - 33248930
Alignment:
Q  557 gtagagctcacacattttaaatgtggaggagtg 589  Q
    |||||||||||||||||||||||||||| ||||    
T  33248962 gtagagctcacacattttaaatgtggagaagtg 33248930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 596
Target Start/End: Complemental strand, 39709141 - 39709105
Alignment:
Q  560 gagctcacacattttaaatgtggaggagtggggtgtc 596  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  39709141 gagctcacacattttaaatgtggagaagtggagtgtc 39709105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 590
Target Start/End: Original strand, 42334092 - 42334124
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtgg 590  Q
    ||||||||||||||||||||||||||| |||||    
T  42334092 tagagctcacacattttaaatgtggagaagtgg 42334124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 566 - 598
Target Start/End: Original strand, 42359871 - 42359903
Alignment:
Q  566 acacattttaaatgtggaggagtggggtgtccg 598  Q
    ||||||||||||||||||| |||||||||||||    
T  42359871 acacattttaaatgtggagaagtggggtgtccg 42359903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 598
Target Start/End: Original strand, 50089335 - 50089375
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccg 598  Q
    |||||||| |||||||||||||||||  |||||||||||||    
T  50089335 tagagctcgcacattttaaatgtggaaaagtggggtgtccg 50089375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 50675707 - 50675751
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||||||| ||||| ||||||| |||||||||||| ||||    
T  50675707 tagagctcacacaatttaattgtggagaagtggggtgtccagagt 50675751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 558 - 601
Target Start/End: Complemental strand, 39907 - 39864
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggag 601  Q
    |||| |||||||||||||||||| |||||||| |||||||||||    
T  39907 tagaactcacacattttaaatgtagaggagtgaggtgtccggag 39864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 558 - 601
Target Start/End: Original strand, 74905 - 74948
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggag 601  Q
    |||| |||||||||||||||||| |||||||| |||||||||||    
T  74905 tagaactcacacattttaaatgtagaggagtgaggtgtccggag 74948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 18444 - 18485
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  18444 tagagctcacacaatttaattgtggagaagtggggtgtccgg 18485  T

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Target: scaffold0088 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Original strand, 10791 - 10832
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||||||||||| ||||| ||||||| ||||||||||||||    
T  10791 tagagctcacacaatttaattgtggagaagtggggtgtccgg 10832  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 558 - 599
Target Start/End: Complemental strand, 315754 - 315713
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccgg 599  Q
    ||||| ||||||||||||||||||||| |||||| |||||||    
T  315754 tagagttcacacattttaaatgtggagaagtgggatgtccgg 315713  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 558 - 602
Target Start/End: Original strand, 93947 - 93991
Alignment:
Q  558 tagagctcacacattttaaatgtggaggagtggggtgtccggagt 602  Q
    ||||||||| ||| ||||| ||||||| |||||||||||||||||    
T  93947 tagagctcatacaatttaattgtggagaagtggggtgtccggagt 93991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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