View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21546_low_16 (Length: 226)
Name: NF21546_low_16
Description: NF21546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21546_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4953740 - 4953522
Alignment:
| Q |
1 |
gaatttgtaatttttgtttctgcaattattttttaatttatcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4953740 |
gaatttgtaatttttgtttctgcaattattttttaatttatcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatca |
4953641 |
T |
|
| Q |
101 |
atttttgtgtccatagttgggttagtgaatgaatatctatctatcattatgtgttggctaattgttcttttttacttcattttgttaggtatacaagccc |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4953640 |
atttttgtgtccttagttgggttagtgaatgaatatctatctatcattatgtgttggctaattgtttttttttacttcattttgttaggtatacaagccc |
4953541 |
T |
|
| Q |
201 |
aactgatatgatgatgtcc |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
4953540 |
aactgatatgatgatgtcc |
4953522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 4938031 - 4937813
Alignment:
| Q |
1 |
gaatttgtaatttttgtttctgcaattattttttaatttatcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4938031 |
gaatttgtaatttttgtttctgcaattatttttaaatttatcaaaagtaaatcacttttatgttgaaaccaattttaaagaatttatacattcaaaatca |
4937932 |
T |
|
| Q |
101 |
atttttgtgtccatagttgggttagtgaatgaatatctatctatcattatgtgttggctaattgttcttttttacttcattttgttaggtatacaagccc |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4937931 |
atttttgtgtccttagttgggttagtgaatgaatatctatctatcattatgtgttggctaattgttattttttacttcattttgttaggtatacaagccc |
4937832 |
T |
|
| Q |
201 |
aactgatatgatgatgtcc |
219 |
Q |
| |
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||||||||||||||||||| |
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| T |
4937831 |
aactgatatgatgatgtcc |
4937813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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