View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21546_low_17 (Length: 209)

Name: NF21546_low_17
Description: NF21546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21546_low_17
NF21546_low_17
[»] scaffold0477 (1 HSPs)
scaffold0477 (17-188)||(3380-3551)
[»] chr6 (17 HSPs)
chr6 (20-182)||(4627255-4627417)
chr6 (20-188)||(4623406-4623574)
chr6 (20-153)||(4298359-4298492)
chr6 (19-182)||(4575560-4575723)
chr6 (20-151)||(4259037-4259168)
chr6 (63-155)||(4255543-4255635)
chr6 (19-155)||(4561794-4561930)
chr6 (20-155)||(4503154-4503289)
chr6 (20-154)||(4471050-4471184)
chr6 (19-155)||(4481997-4482133)
chr6 (25-155)||(4489063-4489193)
chr6 (20-85)||(4581216-4581281)
chr6 (20-154)||(3173136-3173270)
chr6 (35-155)||(4462342-4462462)
chr6 (19-142)||(4265917-4266040)
chr6 (72-142)||(4513895-4513965)
chr6 (21-129)||(4558283-4558391)
[»] chr7 (1 HSPs)
chr7 (37-154)||(3087878-3087995)
[»] chr8 (1 HSPs)
chr8 (20-188)||(20862665-20862833)
[»] scaffold0288 (1 HSPs)
scaffold0288 (21-183)||(2316-2478)
[»] chr5 (1 HSPs)
chr5 (19-109)||(24104273-24104363)


Alignment Details
Target: scaffold0477 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 3380 - 3551
Alignment:
Q  17 caatgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3380 caatgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccatacaa 3479  T
Q  117 gctgctgaagaacatgcattcccaattgttctcttttccaccggaagtgcatgttctttcttgtctgcttta 188  Q
    |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3480 gctgctgaagaacatgcactcccaattgttctcttttccaccggcagtgcatgttctttcttgtctgcttta 3551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 182
Target Start/End: Complemental strand, 4627417 - 4627255
Alignment:
Q  20 tgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagct 119  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||| ||| |||||||||| ||||  | |||||||  ||| ||||||||| |||||||    
T  4627417 tgaacttcttgctaaacttcatgactcagccactgctggtcttgttgcaccagttacttgcttagtttcagattgtttaatgtcatttaccatacaagct 4627318  T
Q  120 gctgaagaacatgcattcccaattgttctcttttccaccggaagtgcatgttctttcttgtct 182  Q
    ||||||||||||||| ||||||||| ||||||||| ||    |||||||||||||||||||||    
T  4627317 gctgaagaacatgcactcccaattgctctcttttctacttctagtgcatgttctttcttgtct 4627255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 4623574 - 4623406
Alignment:
Q  20 tgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagct 119  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||| ||||  | |||||||||||| ||||||| | |||||||    
T  4623574 tgaacttcttgcaaaacttcatgactctgccactgctggtcttgttccaccagttacttgcttagtttccgattgttacatgtcatttacaatacaagct 4623475  T
Q  120 gctgaagaacatgcattcccaattgttctcttttccaccggaagtgcatgttctttcttgtctgcttta 188  Q
    |||||||| |||||| ||||||||||| |||| ||| | |  |||||| || | |||||||||| ||||    
T  4623474 gctgaagagcatgcactcccaattgttttcttctccccagctagtgcaagtaccttcttgtctgtttta 4623406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 4298359 - 4298492
Alignment:
Q  20 tgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagct 119  Q
    ||||||||||| |||||||| ||| |||||||||||||||||||| |||| |||||||||| |||| ||||||| ||  ||| ||||||||| |||||||    
T  4298359 tgaacttcttgctaaacttcgtgattctgccactgctggtcttgtaccaccagttacttgcttagttgctgattttttaatgtcatttaccatacaagct 4298458  T
Q  120 gctgaagaacatgcattcccaattgttctctttt 153  Q
    || |||||||||||| |||||||| |||||||||    
T  4298459 gcggaagaacatgcactcccaattattctctttt 4298492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 4575723 - 4575560
Alignment:
Q  19 atgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagc 118  Q
    |||||||||||| ||||||||| ||||||||||||||||||||| | || | ||| |||||| ||||  ||||||| ||||||||||||||   | | ||    
T  4575723 atgaacttcttgctaaacttcaagactctgccactgctggtcttatccccccagtcacttgcttagtttctgattgctacatgccatttacagtagatgc 4575624  T
Q  119 tgctgaagaacatgcattcccaattgttctcttttccaccggaagtgcatgttctttcttgtct 182  Q
    |||||||||||||||  ||||||||||||| |||||| |  | |||||||||| ||||||||||    
T  4575623 tgctgaagaacatgccctcccaattgttcttttttccccatgtagtgcatgttatttcttgtct 4575560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 4259037 - 4259168
Alignment:
Q  20 tgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagct 119  Q
    ||||||||||| ||||||||| ||||| |||||| ||||| |||||||||  ||||||||| ||||  |||||||||||||| ||||||  | |||||||    
T  4259037 tgaacttcttgctaaacttcaagactcagccactactggtattgttccacctgttacttgcttagtttctgattgttacatgtcatttagtatacaagct 4259136  T
Q  120 gctgaagaacatgcattcccaattgttctctt 151  Q
    |||||||| |||||| ||||||||||| ||||    
T  4259137 gctgaagagcatgcactcccaattgttttctt 4259168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 4255543 - 4255635
Alignment:
Q  63 gttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagctgctgaagaacatgcattcccaattgttctcttttcc 155  Q
    ||||||| |||||||||| ||||  |||||||||||||| ||||||||| ||||||||||||||| |||||| |||||||||||||| |||||    
T  4255543 gttccactagttacttgcttagtttctgattgttacatgtcatttaccatacaagctgctgaagagcatgcactcccaattgttctcctttcc 4255635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 4561930 - 4561794
Alignment:
Q  19 atgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagc 118  Q
    |||||||||||| ||||||||| ||||||||||||||||||||| | || | ||| |||||| ||||  ||||||| ||||||||||||||   |   ||    
T  4561930 atgaacttcttgctaaacttcaagactctgccactgctggtcttatccccccagtcacttgcttagtttctgattgctacatgccatttacagtagctgc 4561831  T
Q  119 tgctgaagaacatgcattcccaattgttctcttttcc 155  Q
    |||||||||||||||| ||||| ||||||| ||||||    
T  4561830 tgctgaagaacatgcactcccagttgttcttttttcc 4561794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 20 - 155
Target Start/End: Original strand, 4503154 - 4503289
Alignment:
Q  20 tgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagct 119  Q
    |||| |||||||||||||| ||||||||||||||||||||||| | || | |||||||||| ||||  |||||||  ||||||||||| |   | | |||    
T  4503154 tgaatttcttgttaaacttaatgactctgccactgctggtcttatccctccagttacttgcttagtttctgattgcaacatgccatttccagtatatgct 4503253  T
Q  120 gctgaagaacatgcattcccaattgttctcttttcc 155  Q
    |||||||||||| || |||||||||||||| |||||    
T  4503254 gctgaagaacatacactcccaattgttctcgtttcc 4503289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 4471184 - 4471050
Alignment:
Q  20 tgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagct 119  Q
    ||||||||||  || |||| ||| ||||||||||||||||||| | || | ||||||||||||| |  ||||||||||||||||||||||   | | |||    
T  4471184 tgaacttcttactagacttgatgcctctgccactgctggtcttatccctccagttacttgcataatttctgattgttacatgccatttacagtagatgct 4471085  T
Q  120 gctgaagaacatgcattcccaattgttctcttttc 154  Q
    |||||||||| |||| ||||||| |||||||||||    
T  4471084 gctgaagaacgtgcactcccaatcgttctcttttc 4471050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 4482133 - 4481997
Alignment:
Q  19 atgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagc 118  Q
    ||||| |||| | |||||||||||| ||||||||||||||| || | || | ||| |||||| ||||  ||||||| ||||||||||||||   | | ||    
T  4482133 atgaatttctggctaaacttcatgaatctgccactgctggtattatccccccagtcacttgcttagtttctgattgctacatgccatttacagtagatgc 4482034  T
Q  119 tgctgaagaacatgcattcccaattgttctcttttcc 155  Q
    ||| |||||||||||| ||||||||||||||||||||    
T  4482033 tgccgaagaacatgcactcccaattgttctcttttcc 4481997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 4489063 - 4489193
Alignment:
Q  25 ttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagctgctga 124  Q
    |||||| ||||||| |||||||||| |||||||||||| | || | |||||||||| ||||  |||||||  | ||| |||||||   | | ||||||||    
T  4489063 ttcttgctaaacttaatgactctgctactgctggtcttatccctccagttacttgcttagtttctgattgcaatatggcatttacagtagatgctgctga 4489162  T
Q  125 agaacatgcattcccaattgttctcttttcc 155  Q
    |||||||||| ||||||||||||||||||||    
T  4489163 agaacatgcactcccaattgttctcttttcc 4489193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 4581281 - 4581216
Alignment:
Q  20 tgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagt 85  Q
    ||||||||||| || |||| |||||||||||||| |||||||||| || | |||||||||||||||    
T  4581281 tgaacttcttgctagacttaatgactctgccacttctggtcttgtccctccagttacttgcatagt 4581216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 154
Target Start/End: Complemental strand, 3173270 - 3173136
Alignment:
Q  20 tgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagct 119  Q
    ||||||| ||| ||||||||| || ||||| |||||||||||| | || | |||||||||| | ||  | ||||| || |||||||||||   | | | |    
T  3173270 tgaactttttgctaaacttcacgattctgcaactgctggtcttatacctccagttacttgctttgtttccgattgctatatgccatttacagtagatgtt 3173171  T
Q  120 gctgaagaacatgcattcccaattgttctcttttc 154  Q
    ||||||||||||||  ||||||||||||| |||||    
T  3173170 gctgaagaacatgctctcccaattgttctattttc 3173136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 155
Target Start/End: Complemental strand, 4462462 - 4462342
Alignment:
Q  35 acttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagctgctgaagaacatgca 134  Q
    |||| ||| |||||||||||| | |||| | || |  ||||||||||||||  ||||||||||||||||||||||     | || |||||| ||| ||||    
T  4462462 acttgatgcctctgccactgccgatcttatccctccggttacttgcatagtttctgattgttacatgccatttacagtggatgccgctgaacaacgtgca 4462363  T
Q  135 ttcccaattgttctcttttcc 155  Q
     ||||||| ||||||||||||    
T  4462362 ctcccaatcgttctcttttcc 4462342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 4265917 - 4266040
Alignment:
Q  19 atgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagc 118  Q
    |||||||||||  || ||||||| | ||||||| || |||| || |||||| | |||||||| | ||  | |||||||||||||| ||||| | | | ||    
T  4265917 atgaacttcttactagacttcatcaatctgccaatgatggttttattccaccaattacttgcttggtttccgattgttacatgccttttacaatagatgc 4266016  T
Q  119 tgctgaagaacatgcattcccaat 142  Q
    ||| |||||||||||| |||||||    
T  4266017 tgcggaagaacatgcactcccaat 4266040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 4513895 - 4513965
Alignment:
Q  72 gttacttgcatagtcgctgattgttacatgccatttaccacacaagctgctgaagaacatgcattcccaat 142  Q
    ||||||||| ||||  ||||||||   ||||||||||| ||||||| ||||||||||| |||| |||||||    
T  4513895 gttacttgcttagtttctgattgtattatgccatttactacacaagttgctgaagaacttgcactcccaat 4513965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 4558391 - 4558283
Alignment:
Q  21 gaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagctg 120  Q
    |||||||||| || |||  |||||||||| ||  |||||||||| || | |||||||||||||||  |||||  |  |||| | ||||||| |||||||     
T  4558391 gaacttcttgctagactaaatgactctgcaacatctggtcttgtccctccagttacttgcatagtttctgatattggcatgtcttttaccatacaagctt 4558292  T
Q  121 ctgaagaac 129  Q
    |||||||||    
T  4558291 ctgaagaac 4558283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 3087995 - 3087878
Alignment:
Q  37 ttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagctgctgaagaacatgcatt 136  Q
    ||||||||||||||  |||||||||| |||||| |||||||||| |||| ||||||| ||||||||||||||||| ||||| |||||||||  ||||| |    
T  3087995 ttcatgactctgccgatgctggtcttattccaccagttacttgcttagtagctgatttttacatgccatttaccatacaagttgctgaagagaatgcact 3087896  T
Q  137 cccaattgttctcttttc 154  Q
    ||||||  ||||||||||    
T  3087895 cccaatccttctcttttc 3087878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 20862665 - 20862833
Alignment:
Q  20 tgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagct 119  Q
    |||||||||||  ||||||||||||||| |||   |||||||| | || |  ||||||||| ||||  ||||| ||| |||| || |||||| ||||| |    
T  20862665 tgaacttcttgccaaacttcatgactcttccaaatctggtcttatacctcctgttacttgcttagtttctgatagtttcatgtcagttaccatacaagtt 20862764  T
Q  120 gctgaagaacatgcattcccaattgttctcttttccaccggaagtgcatgttctttcttgtctgcttta 188  Q
    |||||||||| |||| |||||||||||||| ||  | |    ||||| |||||||||||||||||||||    
T  20862765 gctgaagaacttgcactcccaattgttctccttatcccatctagtgcttgttctttcttgtctgcttta 20862833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 183
Target Start/End: Original strand, 2316 - 2478
Alignment:
Q  21 gaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttaccacacaagctg 120  Q
    |||||||||| || |||| | || ||||||| | |||||||| | || | ||| ||| || ||||  |||||||||||||| ||||||||| ||||||||    
T  2316 gaacttcttgctagacttgacgagtctgccaattctggtcttatccctccagtaactagcttagtttctgattgttacatgtcatttaccatacaagctg 2415  T
Q  121 ctgaagaacatgcattcccaattgttctcttttccaccggaagtgcatgttctttcttgtctg 183  Q
    |||||||| ||||| |||||||  |||| | |||  | || |||||||| || ||||||||||    
T  2416 ctgaagaatatgcactcccaatccttctttattcgccaggtagtgcatgctccttcttgtctg 2478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 24104363 - 24104273
Alignment:
Q  19 atgaacttcttgttaaacttcatgactctgccactgctggtcttgttccacaagttacttgcatagtcgctgattgttacatgccatttac 109  Q
    |||||||||||  || ||||||| | ||||||| || |||| || |||||| | |||||||| ||||  | ||||||||||||||||||||    
T  24104363 atgaacttcttactagacttcatcaatctgccaatgatggtgttattccaccaattacttgcttagtttcggattgttacatgccatttac 24104273  T

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