View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21546_low_3 (Length: 550)
Name: NF21546_low_3
Description: NF21546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21546_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 483; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Original strand, 3800522 - 3801036
Alignment:
| Q |
19 |
ggttagataaacaagcacctcaatctgtcatatatgtttcctttggtagcttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3800522 |
ggttagataaacaagcacctcaatctgtcatatatgtttcctttggtagcttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttga |
3800621 |
T |
|
| Q |
119 |
tcttcttgacaagccttttctttgggttgttcgtcctagtaatgacaacaaggtaaactatgcataccctaatgatttccatggaagtaaaggtaaaatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
3800622 |
tcttcttgacaagccttttctttgggttgttcgtcctagtaatgacaataaggtaaactatacataccctaatgacttccatggaagtaaaggtaaaatt |
3800721 |
T |
|
| Q |
219 |
gttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttatgagtcattgtggatggaattctaccatagaaggtgtacatgctg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3800722 |
gttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttataagtcattgtggatggaattctaccatagaaggtgtacatgctg |
3800821 |
T |
|
| Q |
319 |
gtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatga |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3800822 |
gtgtacctttcttgtgttggccattttcagttgatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatga |
3800921 |
T |
|
| Q |
419 |
tgatggttatatatcaaggaaagagataaagaagaaggtggatcaagtagttggtgatgatgacataaaggcaatgcgtttgaaaatgaagaaaatgact |
518 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
3800922 |
tgatggttatatatcaaggaaagagataaagaagaaggtgtatcaagtagttggtgatgatgacataaaggcaatgtgtttgaaaatgaagaaaatgact |
3801021 |
T |
|
| Q |
519 |
attaataatatagaa |
533 |
Q |
| |
|
|||| |||||||||| |
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|
| T |
3801022 |
attactaatatagaa |
3801036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 3789585 - 3789071
Alignment:
| Q |
19 |
ggttagataaacaagcacctcaatctgtcatatatgtttcctttggtagcttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttga |
118 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3789585 |
ggttagataaacaagcacctcaatcagtcatatatgtttcctttggtagcttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttga |
3789486 |
T |
|
| Q |
119 |
tcttcttgacaagccttttctttgggttgttcgtcctagtaatgacaacaaggtaaactatgcataccctaatgatttccatggaagtaaaggtaaaatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
3789485 |
tcttcttgacaagccttttctttgggttgttcgtcctagtaatgacaataaggtaaactatacataccctaatgacttccatggaagtaaaggtaaaatt |
3789386 |
T |
|
| Q |
219 |
gttggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttatgagtcattgtggatggaattctaccatagaaggtgtacatgctg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| ||||| |||||||||||||| | |
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|
| T |
3789385 |
gttggttgggcaccacaaagtaaaatattgaaccatccagccattgcttgcttcataagtcactgtggatggaattccaccattgaaggtgtacatgccg |
3789286 |
T |
|
| Q |
319 |
gtgtacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatga |
418 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3789285 |
gtgtacctttcttgtgttggccatttttaactgatcaatttctcaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatga |
3789186 |
T |
|
| Q |
419 |
tgatggttatatatcaaggaaagagataaagaagaaggtggatcaagtagttggtgatgatgacataaaggcaatgcgtttgaaaatgaagaaaatgact |
518 |
Q |
| |
|
|||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
3789185 |
tgatggatttatatcaaggcaagagataaagaagaaggtggatcaagtagttggtgatgatgacataaaggaaatgtgtttgaaaatgaagaaaatgact |
3789086 |
T |
|
| Q |
519 |
attaataatatagaa |
533 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
3789085 |
attactaatatagaa |
3789071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 22 - 418
Target Start/End: Complemental strand, 3768246 - 3767850
Alignment:
| Q |
22 |
tagataaacaagcacctcaatctgtcatatatgtttcctttggtagcttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttgatct |
121 |
Q |
| |
|
||||||| ||| || | ||||| ||| ||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3768246 |
tagataagcaaccatcacaatcggtcgtatatgtttccttcggtagtttggcagtaatggaccaaaaccaatttaatgaactagccctaggacttgatct |
3768147 |
T |
|
| Q |
122 |
tcttgacaagccttttctttgggttgttcgtcctagtaatgacaacaaggtaaactatgcataccctaatgatttccatggaagtaaaggtaaaattgtt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |||||| || || ||| |
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|
| T |
3768146 |
tcttgacaagccttttctttgggttgttcgtcctagtaatgacaacaaggtaaactatgcataccctgatgaattcctcggaactaaaggaaagatcgtt |
3768047 |
T |
|
| Q |
222 |
ggttgggcaccacaaagtaaaatattgaatcatccagccattgcttgctttatgagtcattgtggatggaattctaccatagaaggtgtacatgctggtg |
321 |
Q |
| |
|
|||||| ||| || | || |||||||| ||||| || || ||||| || || ||||||||||| ||||||||||| |||||||||||| || ||||| |
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|
| T |
3768046 |
agttgggtaccgcagaagaagatattgaaccatcctgctatagcttgtttcattagtcattgtggttggaattctactatagaaggtgtatattctggta |
3767947 |
T |
|
| Q |
322 |
tacctttcttgtgttggccattttcagttgatcaatttcttaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatga |
418 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||| || || || ||||||||||||||||||||| |||| |||||||||| || ||||| |
|
|
| T |
3767946 |
tacctttcttatgttggccatttgcaactgatcaatttacgaacaagtcatatatttgtgatgtgtggaaggttggatttgaattagacaaggatga |
3767850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 34 - 424
Target Start/End: Complemental strand, 3780512 - 3780122
Alignment:
| Q |
34 |
cacctcaatctgtcatatatgtttcctttggtagcttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttgatcttcttgacaagcc |
133 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||| || || |
|
|
| T |
3780512 |
cacctcaatccgtcgcatatgtttcctttggtagtttggccgtaatggaccaaaaccaatttaacgaactagctttaggacttgatcttcttgataaacc |
3780413 |
T |
|
| Q |
134 |
ttttctttgggttgttcgtcctagtaatgacaacaaggtaaactatgcataccctaatgatttccatggaagtaaaggtaaaattgttggttgggcacca |
233 |
Q |
| |
|
|||| |||||||||||||||| || ||||| || ||||||||||||||||||||| |||| || | ||||| |||||| || |||||||| ||||| || |
|
|
| T |
3780412 |
ttttatttgggttgttcgtccgagcaatgataataaggtaaactatgcataccctgatgaatttcttggaactaaaggaaagattgttggatgggcgccg |
3780313 |
T |
|
| Q |
234 |
caaagtaaaatattgaatcatccagccattgcttgctttatgagtcattgtggatggaattctaccatagaaggtgtacatgctggtgtacctttcttgt |
333 |
Q |
| |
|
|||| || |||||||| || || || |||||||| || || |||||||| ||||||||||||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
3780312 |
caaaagaagatattgaaccaccctgctattgcttgtttcattagtcattgcggatggaattctaccgtagaaggtgtatatagcggtgtacctttcttgt |
3780213 |
T |
|
| Q |
334 |
gttggccattttcagttgatcaatttcttaataaatcgtatatttgtgatgtgtggaagactggacttgaattagagaaagatgatgatgg |
424 |
Q |
| |
|
||||||| ||| | |||||||||| | || || || ||| ||||||||||||||||| |||||||||| |||| || ||||| ||||| |
|
|
| T |
3780212 |
gttggccgtttcacggtgatcaatttatgaacaagtcatatgtttgtgatgtgtggaaggttggacttgaactagacaaggatgaagatgg |
3780122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 34 - 148
Target Start/End: Complemental strand, 3755586 - 3755472
Alignment:
| Q |
34 |
cacctcaatctgtcatatatgtttcctttggtagcttggtagtaatggaccaaaaccaatttaatgaactagccctaggacttgatcttcttgacaagcc |
133 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| || || ||| | | ||| ||||| || ||| |||| ||||| |||||||||||||| | ||| |
|
|
| T |
3755586 |
cacctaaatctgtcatatatgtttcatttggtagtttaatatcaattggtccaaatcaattcaaagaattagctctagggcttgatcttcttgaaaggcc |
3755487 |
T |
|
| Q |
134 |
ttttctttgggttgt |
148 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
3755486 |
ttttctttgggttgt |
3755472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 3755443 - 3755383
Alignment:
| Q |
177 |
tatgcataccctaatgatttccatggaagtaaaggtaaaattgttggttgggcaccacaaa |
237 |
Q |
| |
|
||||||||||| | ||| ||| | |||||| ||||||||||||| |||||| ||||||||| |
|
|
| T |
3755443 |
tatgcatacccaagtgaattcaaaggaagtcaaggtaaaattgtaggttggtcaccacaaa |
3755383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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