View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21546_low_4 (Length: 522)
Name: NF21546_low_4
Description: NF21546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21546_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 234 - 508
Target Start/End: Original strand, 39934430 - 39934704
Alignment:
| Q |
234 |
gctcctaacacgactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaag |
333 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934430 |
gctccaaacacgactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaag |
39934529 |
T |
|
| Q |
334 |
cagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttg |
433 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934530 |
cagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttg |
39934629 |
T |
|
| Q |
434 |
tccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaac |
508 |
Q |
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| T |
39934630 |
tccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaac |
39934704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 234 - 502
Target Start/End: Complemental strand, 39704592 - 39704324
Alignment:
| Q |
234 |
gctcctaacacgactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaag |
333 |
Q |
| |
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||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39704592 |
gctccaaacatgaccaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaag |
39704493 |
T |
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| Q |
334 |
cagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttg |
433 |
Q |
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| T |
39704492 |
cagtgctcaaataaaaagcaatacctataagcattgaaatcattgcagttgatgtgatcttaagtgattgtggaaattgttgataatagaatgtaacttg |
39704393 |
T |
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| Q |
434 |
tccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaaaaaccataacacggacat |
502 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |
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| T |
39704392 |
tccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaacaaccataacacagacat |
39704324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 235 - 508
Target Start/End: Complemental strand, 39695682 - 39695409
Alignment:
| Q |
235 |
ctcctaacacgactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagc |
334 |
Q |
| |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39695682 |
ctccaaacactactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagc |
39695583 |
T |
|
| Q |
335 |
agtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgt |
434 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
39695582 |
agtgctcaaataaaaagcaattcctataagcattgaaatcattgctgttgatgtgttcttaagtgattgtggaaattgttggtagtagaatgtaacttgt |
39695483 |
T |
|
| Q |
435 |
ccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaac |
508 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |
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| T |
39695482 |
ccaggaaaatgaaaagcttctccaataccaaccaacactaactgtggaaacaaccataacacagacatggaaac |
39695409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 39934222 - 39933987
Alignment:
| Q |
1 |
cattgatgaggctagttagcgtgttgtaattagttacagttagtaaaccaatgtagaaagttagttagagtactgttacacatctatgtagctataaata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934222 |
cattgatgaggctagttagcgtgttgtaattagttacagttagtaaaccaatgtagaaagttagttagagtactgttacacatctatgtagctataaata |
39934123 |
T |
|
| Q |
101 |
catgtatgatgtcacattttcacttagatgagaaatcataaattgtcattaatttcttcagtacctttctctcaatctagttcctaaattcagtttcttg |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39934122 |
catgtatgatgtcacattgtcacttagatgagaaatcataaattgtcattaatttcttcagtacctttctctcaatctagttcctaaattcagtttctgg |
39934023 |
T |
|
| Q |
201 |
atgtagattatttgtgacatacattgcatctgtgct |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
39934022 |
atgtagattatttgtgacatacattgcatctgtgct |
39933987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 245 - 508
Target Start/End: Original strand, 39928794 - 39929057
Alignment:
| Q |
245 |
gactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaag |
344 |
Q |
| |
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|||||||||||| |||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| | |
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| T |
39928794 |
gactaacatccagtacacattgtcaatcttcccatgatttatgtcatcaggtaaccaatcagtactcctacgaacttgatcaattaatgcattgctcatg |
39928893 |
T |
|
| Q |
345 |
taaaaagcaattcctataagcattgaaatcattgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaat |
444 |
Q |
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|||||||||| |||||||||||||||| | ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39928894 |
taaaaagcaacccctataagcattgaaaccgttgcagttgatgtgctctttagcgattgtggaaattgttgataatagaatgtaacttgtccaggaaaat |
39928993 |
T |
|
| Q |
445 |
gaaaagcttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaac |
508 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| |||||||| || ||||| ||||| |
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| T |
39928994 |
gaaacgcttctccgataccaaccaacactaattgtggaaacaaccataatacagacattgaaac |
39929057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 377 - 502
Target Start/End: Original strand, 38061603 - 38061728
Alignment:
| Q |
377 |
tgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaat |
476 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| |
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| T |
38061603 |
tgcagttgatgtgctcttcagtgactgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaatactcaccagcattaat |
38061702 |
T |
|
| Q |
477 |
tgtggaaaaaaccataacacggacat |
502 |
Q |
| |
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|||||||| || |||||||| ||||| |
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| T |
38061703 |
tgtggaaacaaacataacacagacat |
38061728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 276 - 352
Target Start/End: Original strand, 38059050 - 38059126
Alignment:
| Q |
276 |
ccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagc |
352 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||| ||||| | | |||||||| ||||| ||||||||||| |||||| |
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| T |
38059050 |
ccatgatttatgtcatctggtaaccaattagtaatcctatggatttggtcaactaaagtagtgctcaagttaaaagc |
38059126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 362 - 437
Target Start/End: Complemental strand, 4847209 - 4847134
Alignment:
| Q |
362 |
aagcattgaaatcattgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgtcca |
437 |
Q |
| |
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||||||||||||||||| ||||||||||||| || | ||||||||||||||| || || |||||||||| |||| |
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| T |
4847209 |
aagcattgaaatcattggagttgatgtgctcaaaaattattgtggaaattgtttgtagtaaaatgtaacttctcca |
4847134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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