View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21546_low_5 (Length: 521)
Name: NF21546_low_5
Description: NF21546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21546_low_5 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 503; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 39934198 - 39934704
Alignment:
| Q |
1 |
aacacgctaactagcctcatcaatgtttgttagatcagtaacttgttgtgcaagtcactaagaattgctacatatcttgacagtctttttcatagaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934198 |
aacacgctaactagcctcatcaatgtttgttagatcagtaacttgttgtgcaagtcactaagaattgctacatatcttgacagtctttttcatagaatgt |
39934297 |
T |
|
| Q |
101 |
aggagagaagaacttatcatcattatcacttattccaaccataacaatatcatttatcatcatttcaaatcttcttaaatatcttcatatttgtaagaaa |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39934298 |
aggagagaagaacgtatcatcattatcacttattccaaccataacaatatcatttatcatcatttcaaatcttcttaaatatcttcatatttgtaagaaa |
39934397 |
T |
|
| Q |
201 |
tagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaacca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39934398 |
tagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaaccttgccatgatttatttcatcaggtaacca |
39934497 |
T |
|
| Q |
301 |
atcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttgatgtgctcttaagtgat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39934498 |
atcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttgatgtgctcttaagtgat |
39934597 |
T |
|
| Q |
401 |
tgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaaaaaccataacacggaca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39934598 |
tgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaaaaaccataacacggaca |
39934697 |
T |
|
| Q |
501 |
tggaaac |
507 |
Q |
| |
|
||||||| |
|
|
| T |
39934698 |
tggaaac |
39934704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 173 - 501
Target Start/End: Complemental strand, 39704652 - 39704324
Alignment:
| Q |
173 |
tcttaaatatcttcatatttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaacct |
272 |
Q |
| |
|
||||||| || |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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|
| T |
39704652 |
tcttaaacattttcatacttgtaagaaatagagcacagtaagtaatacacaaagttgatagctccaaacatgaccaacatccaatacacattatcaacct |
39704553 |
T |
|
| Q |
273 |
tgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaat |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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|
| T |
39704552 |
tgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagcaatacctataagcattgaaat |
39704453 |
T |
|
| Q |
373 |
cattgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacact |
472 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39704452 |
cattgcagttgatgtgatcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacact |
39704353 |
T |
|
| Q |
473 |
aattgtggaaaaaaccataacacggacat |
501 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |
|
|
| T |
39704352 |
aattgtggaaacaaccataacacagacat |
39704324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 184 - 507
Target Start/End: Complemental strand, 39695732 - 39695409
Alignment:
| Q |
184 |
ttcatatttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaacatccaatacacattatcaaccttgccatgattt |
283 |
Q |
| |
|
|||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39695732 |
ttcatacttgtaagaaatagagcacaataggtaatacacaaagttgatacctccaaacactactaacatccaatacacattatcaaccttgccatgattt |
39695633 |
T |
|
| Q |
284 |
atttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagcaattcctataagcattgaaatcattgcagttg |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39695632 |
atttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaaataaaaagcaattcctataagcattgaaatcattgctgttg |
39695533 |
T |
|
| Q |
384 |
atgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaa |
483 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
39695532 |
atgtgttcttaagtgattgtggaaattgttggtagtagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaactgtggaaa |
39695433 |
T |
|
| Q |
484 |
aaaccataacacggacatggaaac |
507 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
39695432 |
caaccataacacagacatggaaac |
39695409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 151 - 507
Target Start/End: Original strand, 39928701 - 39929057
Alignment:
| Q |
151 |
catttatcatcatttcaaatcttcttaaatatcttcatatttgtaagaaatagagcacagtaaataatacacaaagttgatagctccaaacacgactaac |
250 |
Q |
| |
|
|||||||||| | ||| ||| ||||||| || |||||| ||||||| | ||| || | ||| |||||||||||||| ||| | || | | ||||||| |
|
|
| T |
39928701 |
catttatcataacatcacatcctcttaaacattttcatacttgtaaggagaagaacaaaataagtaatacacaaagtttatacccccgagtaggactaac |
39928800 |
T |
|
| Q |
251 |
atccaatacacattatcaaccttgccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaag |
350 |
Q |
| |
|
||||| |||||||| |||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||| |
|
|
| T |
39928801 |
atccagtacacattgtcaatcttcccatgatttatgtcatcaggtaaccaatcagtactcctacgaacttgatcaattaatgcattgctcatgtaaaaag |
39928900 |
T |
|
| Q |
351 |
caattcctataagcattgaaatcattgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagc |
450 |
Q |
| |
|
||| |||||||||||||||| | ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39928901 |
caacccctataagcattgaaaccgttgcagttgatgtgctctttagcgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaacgc |
39929000 |
T |
|
| Q |
451 |
ttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaac |
507 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||||||| || ||||| ||||| |
|
|
| T |
39929001 |
ttctccgataccaaccaacactaattgtggaaacaaccataatacagacattgaaac |
39929057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 39928648 - 39928688
Alignment:
| Q |
86 |
tttttcatagaatgtaggagagaagaacttatcatcattat |
126 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | |||||| |
|
|
| T |
39928648 |
tttttcatagaatgtaggagaaaagaacttattaccattat |
39928688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 376 - 501
Target Start/End: Original strand, 38061603 - 38061728
Alignment:
| Q |
376 |
tgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaat |
475 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| |
|
|
| T |
38061603 |
tgcagttgatgtgctcttcagtgactgtggaaattgttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaatactcaccagcattaat |
38061702 |
T |
|
| Q |
476 |
tgtggaaaaaaccataacacggacat |
501 |
Q |
| |
|
|||||||| || |||||||| ||||| |
|
|
| T |
38061703 |
tgtggaaacaaacataacacagacat |
38061728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 275 - 351
Target Start/End: Original strand, 38059050 - 38059126
Alignment:
| Q |
275 |
ccatgatttatttcatcaggtaaccaatcagtactcctacgaacttggtcaattaaagcagtgctcaagtaaaaagc |
351 |
Q |
| |
|
||||||||||| ||||| |||||||||| |||| ||||| | | |||||||| ||||| ||||||||||| |||||| |
|
|
| T |
38059050 |
ccatgatttatgtcatctggtaaccaattagtaatcctatggatttggtcaactaaagtagtgctcaagttaaaagc |
38059126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 361 - 436
Target Start/End: Complemental strand, 4847209 - 4847134
Alignment:
| Q |
361 |
aagcattgaaatcattgcagttgatgtgctcttaagtgattgtggaaattgttgataatagaatgtaacttgtcca |
436 |
Q |
| |
|
||||||||||||||||| ||||||||||||| || | ||||||||||||||| || || |||||||||| |||| |
|
|
| T |
4847209 |
aagcattgaaatcattggagttgatgtgctcaaaaattattgtggaaattgtttgtagtaaaatgtaacttctcca |
4847134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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