View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21546_low_6 (Length: 405)

Name: NF21546_low_6
Description: NF21546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21546_low_6
NF21546_low_6
[»] chr2 (8 HSPs)
chr2 (17-390)||(35890352-35890725)
chr2 (43-189)||(34989848-34989995)
chr2 (220-273)||(34989793-34989846)
chr2 (203-256)||(35887687-35887740)
chr2 (31-187)||(35528261-35528418)
chr2 (118-159)||(35892221-35892262)
chr2 (220-292)||(35919015-35919092)
chr2 (31-104)||(35564642-35564715)
[»] chr1 (2 HSPs)
chr1 (33-149)||(21445263-21445379)
chr1 (316-390)||(21445143-21445217)
[»] chr3 (2 HSPs)
chr3 (18-149)||(29623760-29623891)
chr3 (180-212)||(42189733-42189765)


Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Complemental strand, 35890725 - 35890352
Alignment:
Q  17 accatgctcttgtaagaaccatattgatcacaaaagacaatgcctgatacagaaccggtcgcagaaattatcctaacaaattgacgatgatcatatgtcg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890725 accatgctcttgtaagaaccatattgatcacaaaagacaatgcctgatacagaaccggtcgcagaaattatcctaacaaattgacgatgatcatatgtcg 35890626  T
Q  117 cagatagttggtatatagcatccactacatcctacaaaataattaatattttcaaaaccatattatatttaattatttcctcgttctatagtaacagtac 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890625 cagatagttggtatatagcatccactacatcctacaaaataattaatattttcaaaaccatattatatttaattatttcctcgttctatagtaacagtac 35890526  T
Q  217 attaatgaaatataaaattgcatatgaaatgtgaagattgaataatgttatgcacctgaccagcattcaaattcatggtatgcaagccaggagggtttcc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890525 attaatgaaatataaaattgcatatgaaatgtgaagattgaataatgttatgcacctgaccagcattcaaattcatggtatgcaagccaggagggtttcc 35890426  T
Q  317 atttcttttcttggaagaaattgtagtatcagaaggtccttctgattttctcttccttagtgttatgttaatag 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35890425 atttcttttcttggaagaaattgtagtatcagaaggtccttctgattttctcttccttagtgttatgttaatag 35890352  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 34989995 - 34989848
Alignment:
Q  43 atcacaaaagacaatgcctgatacagaaccggtcgcagaaattatcctaacaaattgacgatgatcatatgtcgcagatagttggtatatagcatccact 142  Q
    ||||| |||||||||   ||||||| |||| |||||| ||| ||| ||||||    ||||||||||||||| | |||||||||| |||| |||||||||     
T  34989995 atcacgaaagacaatcattgatacaaaaccagtcgcaaaaactatgctaacatgacgacgatgatcatatgcctcagatagttgatatacagcatccacc 34989896  T
Q  143 acatcctacaaaataattaa-tattttcaaaaccatattatatttaat 189  Q
    | ||||| |||||||||||| || || ||||||||||| |||||||||    
T  34989895 aaatcctgcaaaataattaattaattgcaaaaccatataatatttaat 34989848  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 273
Target Start/End: Complemental strand, 34989846 - 34989793
Alignment:
Q  220 aatgaaatataaaattgcatatgaaatgtgaagattgaataatgttatgcacct 273  Q
    |||||||||||||||||||||||||| |||||||||||| | ||||||||||||    
T  34989846 aatgaaatataaaattgcatatgaaaagtgaagattgaacagtgttatgcacct 34989793  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 35887740 - 35887687
Alignment:
Q  203 tatagtaacagtacattaatgaaatataaaattgcatatgaaatgtgaagattg 256  Q
    ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  35887740 tatagtaacagtacattgatgaaatataaagttgcatctgaaatgtgaagattg 35887687  T

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Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 187
Target Start/End: Original strand, 35528261 - 35528418
Alignment:
Q  31 agaaccatattgatcacaaaagacaatgcctgatacagaaccggtcgcagaaattatcctaacaaattgacgatgatcatatgtcgcagatagttggtat 130  Q
    |||||||| |||||||  ||||| || | |||||||| |||| | | |||||  ||| |||||||   || |||||| | ||| | |||||||| |||||    
T  35528261 agaaccatcttgatcatgaaagagaacgtctgatacataaccagacacagaatctatactaacaaggcgatgatgatgaaatgcctcagatagtcggtat 35528360  T
Q  131 atagcatccactacatcctacaaaat-aattaatattttcaaaaccatattatattta 187  Q
    | ||||||||| |||||||||||||| | ||| ||||||||||| ||||| |||||||    
T  35528361 agagcatccaccacatcctacaaaatcatttattattttcaaaagcatataatattta 35528418  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 35892262 - 35892221
Alignment:
Q  118 agatagttggtatatagcatccactacatcctacaaaataat 159  Q
    |||||||||||||| ||||||||||||||||| |||||||||    
T  35892262 agatagttggtataaagcatccactacatcctgcaaaataat 35892221  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 292
Target Start/End: Complemental strand, 35919092 - 35919015
Alignment:
Q  220 aatgaaatataaaattgcatatgaaatgtgaagattg----aataatgttatgc-acctgaccagcattcaaattcat 292  Q
    ||||||||||||||||||||||| |||| ||||||||    | ||| ||||| | |||||||||||||||||||||||    
T  35919092 aatgaaatataaaattgcatatggaatgcgaagattggttaattaaagttatactacctgaccagcattcaaattcat 35919015  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 35564642 - 35564715
Alignment:
Q  31 agaaccatattgatcacaaaagacaatgcctgatacagaaccggtcgcagaaattatcctaacaaattgacgat 104  Q
    ||||||||  ||||||| ||||| || | |||||||||||||||| |||||||  || ||||||| ||||||||    
T  35564642 agaaccatcatgatcacgaaagagaaagtctgatacagaaccggttgcagaaaccatgctaacaagttgacgat 35564715  T

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Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 149
Target Start/End: Complemental strand, 21445379 - 21445263
Alignment:
Q  33 aaccatattgatcacaaaagacaatgcctgatacagaaccggtcgcagaaattatcctaacaaattgacgatgatcatatgtcgcagatagttggtatat 132  Q
    ||||||||||||||| |||||||||| |||||| | ||||||||||||||||||| || | | || |||||||||||||||||  |||||||||||||||    
T  21445379 aaccatattgatcacgaaagacaatgtctgatataaaaccggtcgcagaaattatgcttagatatcgacgatgatcatatgtcttagatagttggtatat 21445280  T
Q  133 agcatccactacatcct 149  Q
    ||| ||||| |||||||    
T  21445279 agcgtccacaacatcct 21445263  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 390
Target Start/End: Complemental strand, 21445217 - 21445143
Alignment:
Q  316 catttcttttcttggaagaaattgtagtatcagaaggtccttctgattttctcttccttagtgttatgttaatag 390  Q
    ||||||||||||| |||||| ||  ||  ||||||||||||||| |||||||||||||| | |||||||| ||||    
T  21445217 catttcttttcttcgaagaagtttcagcttcagaaggtccttctaattttctcttccttggcgttatgtttatag 21445143  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 29623891 - 29623760
Alignment:
Q  18 ccatgctcttgtaagaaccatattgatcacaaaagacaatgcctgatacagaaccggtcgcagaaattatcctaacaaattgacgatgatcatatgtcgc 117  Q
    |||||| |||||||||||||||||||||||  | |||||   ||||| ||||||| |||||||||||||| ||||||||| || |||||||||||| | |    
T  29623891 ccatgcgcttgtaagaaccatattgatcacggatgacaacatctgatgcagaaccagtcgcagaaattatactaacaaatcgatgatgatcatatgcctc 29623792  T
Q  118 agatagttggtatatagcatccactacatcct 149  Q
    |||||||| ||||| ||| ||||  |||||||    
T  29623791 agatagtttgtataaagcgtccaaaacatcct 29623760  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 212
Target Start/End: Complemental strand, 42189765 - 42189733
Alignment:
Q  180 tatatttaattatttcctcgttctatagtaaca 212  Q
    |||||||||||||||||||||||||||||||||    
T  42189765 tatatttaattatttcctcgttctatagtaaca 42189733  T

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