View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21546_low_7 (Length: 374)
Name: NF21546_low_7
Description: NF21546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21546_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 82 - 324
Target Start/End: Complemental strand, 54301172 - 54300928
Alignment:
| Q |
82 |
cactgttttgtgtatactactaagtattcttctattctgtcttgtgtagaccattctattccaattatcatcaccaccnnnnnnnnnnnnnnnn--caac |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
54301172 |
cactgttttgtgtatactactaagtattcttctattctgtcttgtgtagaccattctattccaattatcatcaccagctttttttttattttttttcaac |
54301073 |
T |
|
| Q |
180 |
cccacacacttctcactccaataaataactcactcttttccaccaccgacctttctcttttctagggtttacaatttcttcccttttttccccttcaatt |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54301072 |
cccacacacttctcactccaataaataactcactcttttccaccaccgacctttctcttttctagggtttacaatttcttcccttttttccccttcaatt |
54300973 |
T |
|
| Q |
280 |
tataattaaaactattttaattcgttgttactattattattatta |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54300972 |
tataattaaaactattttaattcgttgttactattattattatta |
54300928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 311 - 362
Target Start/End: Complemental strand, 54300923 - 54300872
Alignment:
| Q |
311 |
tattattattattaggttaccctcatcactctcaccttcttctattttctcc |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54300923 |
tattattattattaggttaccctcatcactctcaccttcttctatttcctcc |
54300872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University