View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21547_low_2 (Length: 340)
Name: NF21547_low_2
Description: NF21547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21547_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 20 - 330
Target Start/End: Complemental strand, 31954325 - 31954011
Alignment:
| Q |
20 |
tatattcactaacaattcattgaactacatcaactacgtatctgaactatattaaccatataatatattattgaacttgatgttaattttgtgtcataat |
119 |
Q |
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| T |
31954325 |
tatattcgctaacaattcactgaactacatcaactacatatctgaactatattaaccatataatatattattgaacttgatgttaattttgtgtcataat |
31954226 |
T |
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| Q |
120 |
atcatttctccttaatttttgataaacaatcatttctctttcaaaagatgaaaatacacataaaaatccaatataatcgtattttacatcaaaattttaa |
219 |
Q |
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| T |
31954225 |
atcatttctccttaatttttgataaacaatcatttctctttcaaaagatgaaaatacacataaaaatccaatataatcgtattttacatcaaaattttaa |
31954126 |
T |
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| Q |
220 |
tagtaaattatcatttcacaatttaaaatatctccaagtgttctataaaaaactacatgcatgataaata----gataattgtcatgttgccattcatga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31954125 |
tagtaaattatcatttcacaatttaaaatatctccaagtgttctataaaaaactacatgcatgataaatagatagataattgtcatgttgccattcatga |
31954026 |
T |
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| Q |
316 |
ttcatccatttcatt |
330 |
Q |
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||||||||||||||| |
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| T |
31954025 |
ttcatccatttcatt |
31954011 |
T |
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