View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21547_low_3 (Length: 333)
Name: NF21547_low_3
Description: NF21547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21547_low_3 |
 | |
|
| [»] scaffold0889 (1 HSPs) |
| | |
|
| [»] scaffold0870 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 2600937 - 2600611
Alignment:
| Q |
1 |
tctatatgattaattctatcaactctttgaagaatgaaagatcctaacctgatttaacatagtgacctccttgtcttagcaagcgaaatgtaagcgcaac |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2600937 |
tctatatgattaattctatcaactttttgaagaatgaaagatcctaacctgatttaacatagtggcctccttgtcttagcaagcgaaatgtaagcgcaac |
2600838 |
T |
|
| Q |
101 |
ttcatggagttcatggctatggacaaaatcaatggcatttctgctgaacattttatgttgattttgaagggctgcttcaatctcctcagcaaagtgatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2600837 |
ttcatggagttcatggctatggacaaaatcaatggcatttctgctgaacattttatgttgattttgaagggctgcttcaatctcctcagcaaagtgatgt |
2600738 |
T |
|
| Q |
201 |
tcaatgccaagcctttggatactgtcaatcatgcacaaacttttcatcggatcctcgtcagaagcaagtaatttcttatatgcttgtttggcttccttca |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2600737 |
tcaatgccaagcctttggataatgtcaatcatgcacaaacttttcatcggatcctcgtcagaagcaagtaatttcttatatgcttgtttggcttccttca |
2600638 |
T |
|
| Q |
301 |
atatcaaagcttgttttacgtaattaa |
327 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2600637 |
atatcaaagcttgttttacgtaattaa |
2600611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 183 - 317
Target Start/End: Complemental strand, 2599769 - 2599635
Alignment:
| Q |
183 |
tcctcagcaaagtgatgttcaatgccaagcctttggatactgtcaatcatgcacaaacttttcatcggatcctcgtcagaagcaagtaatttcttatatg |
282 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2599769 |
tcctcagcaaagtgatgttcaataccaagcctttggataacgtcaatcatgcacaaaattttcatcggatcctcgtcagaagcaagtaatttcttatgtg |
2599670 |
T |
|
| Q |
283 |
cttgtttggcttccttcaatatcaaagcttgtttt |
317 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||| |
|
|
| T |
2599669 |
cttgcttggcttccttcaatatcaatgcttgtttt |
2599635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 28574981 - 28575070
Alignment:
| Q |
44 |
ctaacctgatttaacatagtgacctccttgtcttagcaagcgaaatgtaagcgcaacttcatggagttcatggctatggacaaaatcaat |
133 |
Q |
| |
|
|||||||| || |||||||| ||||||||||| |||||||| |||| ||| | || ||||| |||||||||||||| ||||||||||| |
|
|
| T |
28574981 |
ctaacctgcattgacatagtggcctccttgtctcagcaagcggaatgcaagtgaaaattcatagagttcatggctattcacaaaatcaat |
28575070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 28568160 - 28568227
Alignment:
| Q |
66 |
cctccttgtcttagcaagcgaaatgtaagcgcaacttcatggagttcatggctatggacaaaatcaat |
133 |
Q |
| |
|
||||||||||| |||||||| |||| ||| |||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
28568160 |
cctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctactcacaaaatcaat |
28568227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 28580056 - 28580123
Alignment:
| Q |
66 |
cctccttgtcttagcaagcgaaatgtaagcgcaacttcatggagttcatggctatggacaaaatcaat |
133 |
Q |
| |
|
||||||||||| |||||||| |||| ||| |||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
28580056 |
cctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctacttacaaaatcaat |
28580123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 133
Target Start/End: Original strand, 20618407 - 20618474
Alignment:
| Q |
66 |
cctccttgtcttagcaagcgaaatgtaagcgcaacttcatggagttcatggctatggacaaaatcaat |
133 |
Q |
| |
|
||||||||||| ||||| || |||| ||| |||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
20618407 |
cctccttgtctgagcaaacggaatgcaagtgcaacttcatagagttcatggctactaacaaaatcaat |
20618474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 28586213 - 28586266
Alignment:
| Q |
66 |
cctccttgtcttagcaagcgaaatgtaagcgcaacttcatggagttcatggcta |
119 |
Q |
| |
|
||||||||||| |||||||| |||| ||| |||||||||| || |||||||||| |
|
|
| T |
28586213 |
cctccttgtctcagcaagcggaatgcaagtgcaacttcatagatttcatggcta |
28586266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 26316039 - 26316111
Alignment:
| Q |
44 |
ctaacctgatttaacatagtgacctccttgtcttagcaagcgaaatgtaagcgcaacttcatggagttcatgg |
116 |
Q |
| |
|
|||||||| || ||||| || ||||||||||| |||||||| |||| ||| |||||||| | |||||||||| |
|
|
| T |
26316039 |
ctaacctgcatttacataatgtcctccttgtctgagcaagcggaatgcaagtgcaacttcgtagagttcatgg |
26316111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 4725 - 4658
Alignment:
| Q |
66 |
cctccttgtcttagcaagcgaaatgtaagcgcaacttcatggagttcatggctatggacaaaatcaat |
133 |
Q |
| |
|
||||||||||| |||||||| |||| ||| |||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
4725 |
cctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctactcacaaaatcaat |
4658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 133
Target Start/End: Complemental strand, 4929 - 4862
Alignment:
| Q |
66 |
cctccttgtcttagcaagcgaaatgtaagcgcaacttcatggagttcatggctatggacaaaatcaat |
133 |
Q |
| |
|
||||||||||| |||||||| |||| ||| |||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
4929 |
cctccttgtctcagcaagcggaatgcaagtgcaacttcatagagttcatggctactcacaaaatcaat |
4862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 24071675 - 24071751
Alignment:
| Q |
57 |
acatagtgacctccttgtcttagcaagcgaaatgtaagcgcaacttcatggagttcatggctatggacaaaatcaat |
133 |
Q |
| |
|
||||| || ||||||||||| |||||||| |||| ||| ||||||| || ||||||||||||| ||||||||||| |
|
|
| T |
24071675 |
acataatggcctccttgtctgagcaagcggaatgcaagtgcaacttgatagagttcatggctactcacaaaatcaat |
24071751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University