View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21547_low_4 (Length: 307)
Name: NF21547_low_4
Description: NF21547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21547_low_4 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 45 - 307
Target Start/End: Complemental strand, 36377097 - 36376841
Alignment:
| Q |
45 |
gcacatacaagaattttaggttgctaatatatttgaattgttataatgatgcaggacgcgactacaaagttaccggcagatagagcagcgacaaggagag |
144 |
Q |
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| T |
36377097 |
gcacatacaagaattttaggtt------atatttgaattgttataatgatgcaggacgcgactacaaagttaccggcagatagagcagcgacaaggagag |
36377004 |
T |
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| Q |
145 |
acgctgaaggggtgacgggtgcagaaatgagaaatgatccatatctcactactcatcctggaggagtgtctgcatcaatggcagccgcagctaggcttaa |
244 |
Q |
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| T |
36377003 |
atgccgaaggggtgacgggtgcagaaatgagaaatgatccatatctcactactcatcctggaggagtgtcagcatcaatggcagccgcagctaggcttaa |
36376904 |
T |
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| Q |
245 |
tcaaaagaataacaactagttgctaccttagtagttagctaccttatatatgtatattaatgg |
307 |
Q |
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| T |
36376903 |
ccaaaagaataacaactagttgctacctaagtagttagctaccttatatatgtatattaatgg |
36376841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 36377117 - 36377164
Alignment:
| Q |
1 |
caaagatgtttgatgttggagcgcagatttaaatctgcaattctgcac |
48 |
Q |
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| T |
36377117 |
caaagatgtttgatgttggagagcggatttaaatctgcaactctgcac |
36377164 |
T |
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