View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21547_low_5 (Length: 291)
Name: NF21547_low_5
Description: NF21547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21547_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 75 - 274
Target Start/End: Complemental strand, 24645306 - 24645107
Alignment:
| Q |
75 |
atctttctcaagcattcctcgcacgtgccgtttacctcaaccctgaaattcgtgcagcttcactctcttccacttcttccctctccttccctgctctcaa |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24645306 |
atctttctcaagcattcctcgcacgtgccgtttacctcaaccctgaaattcgtgcagcttcactctcttccacttcttccctctccttccctgctctcaa |
24645207 |
T |
|
| Q |
175 |
atcctcctcttcatgcaaaccaactacctcccgtcgcagaaccacaccagccatccgcgccaccgctgttgaaacactcgacaaaaccaccgaagcttct |
274 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24645206 |
atcctcctcttcatccaaaccacctacctcccgtcgcagaaccacaccagccatccgcgccaccgctgttgaaacactcgacaaaaccaccgaagcttct |
24645107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 75 - 274
Target Start/End: Original strand, 52485470 - 52485669
Alignment:
| Q |
75 |
atctttctcaagcattcctcgcacgtgccgtttacctcaaccctgaaattcgtgcagcttcactctcttccacttcttccctctccttccctgctctcaa |
174 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52485470 |
atctttctcaagcattcctcgcacgtgccgtttacctcaaccctgaaattcgtgcagcttcactctcttccacttcttccctctccttccctgctctcaa |
52485569 |
T |
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| Q |
175 |
atcctcctcttcatgcaaaccaactacctcccgtcgcagaaccacaccagccatccgcgccaccgctgttgaaacactcgacaaaaccaccgaagcttct |
274 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52485570 |
atcctcctcttcatccaaaccacctacctcccgtcgcagaaccacaccagccatccgcgccaccgctgttgaaacactcgacaaaaccaccgaagcttct |
52485669 |
T |
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