View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21547_low_6 (Length: 289)
Name: NF21547_low_6
Description: NF21547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21547_low_6 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 14789877 - 14789620
Alignment:
| Q |
18 |
actttcagatatagatgaccaagaaggattacgttatcaaactcgtttgatacaattttacaagtatgatccaaatatggcagggaaagaccctgttgat |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14789877 |
actttcagatatagatgaccaagaaggattacgttatcaaactcgtttgatacaattttacaagtatgatccaaatatggcagggaaagaccctgttgat |
14789778 |
T |
|
| Q |
118 |
attattagaaaagcattagcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtcctagtaggaaacttatggttgattgtaatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
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| T |
14789777 |
attattagaaaagcattagcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtccaagtaggaaacttatggtggattgtaatg |
14789678 |
T |
|
| Q |
218 |
atgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtga |
275 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14789677 |
atgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtga |
14789620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 14769828 - 14769569
Alignment:
| Q |
18 |
actttcagatatagatgaccaagaaggattacgttatcaaactcgtttgatacaattttacaagtatgatccaaatatggcagggaaagaccctgttgat |
117 |
Q |
| |
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||||||||| ||||||||||||||||| ||||||| ||||| || ||||||||||||| || |||||||||||||||||||| ||||| ||||||||| |
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| T |
14769828 |
actttcagacatagatgaccaagaagggttacgttttcaaattccagtgatacaattttataaatatgatccaaatatggcaggtaaagatcctgttgat |
14769729 |
T |
|
| Q |
118 |
attattagaaaagcattagcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtcctagtaggaaacttatggttgattgtaatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| | || |
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| T |
14769728 |
tttattagaaaagcattagcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtcctggtaggaaacttatggtggattgcactg |
14769629 |
T |
|
| Q |
218 |
atgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgatg |
277 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||| | | || |||||||||||| |
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|
| T |
14769628 |
gagaaggtgttttgtttattgaagctgatgcagatgttagtttgaaagaatttggtgatg |
14769569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 14875034 - 14874795
Alignment:
| Q |
18 |
actttcagatatagatgaccaagaaggattacgttatcaaactcgtttgatacaattttacaagtatgatccaaatatggcagggaaagaccctgttgat |
117 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| | | |||||||||||||||| |||| |||| |||||||| |||||| ||||||||| |
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|
| T |
14875034 |
actttcagatatagatgaccaagaagggttacgttatcaaatgcctgtgatacaattttacaactatgttccagttatggcagagaaagatcctgttgat |
14874935 |
T |
|
| Q |
118 |
attattagaaaagcattagcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtcctagtaggaaacttatggttgattgtaatg |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| | || |
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| T |
14874934 |
gttattagaaaagcattagcaaaaacacttgtgttttattatccatttgcaggtaggttaagggaaggtcctggtaggaaacttatggtggattgcactg |
14874835 |
T |
|
| Q |
218 |
atgaaggtattttgtttattgaagctgatgctgatgttac |
257 |
Q |
| |
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|||||| |||||||||||||||||||||| |||||||| |
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| T |
14874834 |
gagaaggtgttttgtttattgaagctgatgcagatgttac |
14874795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 66 - 256
Target Start/End: Original strand, 14757091 - 14757281
Alignment:
| Q |
66 |
gatacaattttacaagtatgatccaaatatggcagggaaagaccctgttgatattattagaaaagcattagcaaaaacacttgtgttttattatccattt |
165 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14757091 |
gatacaattttataaatatgatccaaatatggcagggaaagaccctgttgatattattagaaaagcattagcaaaaacacttgtgttttattatccattt |
14757190 |
T |
|
| Q |
166 |
gcaggtagattaagggaaggtcctagtaggaaacttatggttgattgtaatgatgaaggtattttgtttattgaagctgatgctgatgtta |
256 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| ||||| | || |||||| |||||||||||||||||||||| ||||||| |
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| T |
14757191 |
gcaggtagattaagggaaggtccgggtaggaaacttatggtggattgcactggagaaggtgttttgtttattgaagctgatgcagatgtta |
14757281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 22 - 277
Target Start/End: Complemental strand, 14880316 - 14880061
Alignment:
| Q |
22 |
tcagatatagatgaccaagaaggattacgttatcaaactcgtttgatacaattttacaagtatgatccaaatatggcagggaaagaccctgttgatatta |
121 |
Q |
| |
|
||||| || ||||||||||| |||||||| ||| || |||||||||||| || || ||||||||||||||||||||||||| ||||||||| ||| |
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| T |
14880316 |
tcagacattgatgaccaagattcattacgttggcaagttcctttgatacaattctataaccatgatccaaatatggcagggaaagatcctgttgatgtta |
14880217 |
T |
|
| Q |
122 |
ttagaaaagcattagcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtcctagtaggaaacttatggttgattgtaatgatga |
221 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| | || || |
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|
| T |
14880216 |
ttagaaaagcattagcaaaaacacttgtattttattatccatttgcaggtagattaagggaaggtcctggtaggaaacttatggtggattgcactggaga |
14880117 |
T |
|
| Q |
222 |
aggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgatg |
277 |
Q |
| |
|
|||| |||||||||||||||||||||| |||||||||||| || | |||||||||| |
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| T |
14880116 |
aggtgttttgtttattgaagctgatgcagatgttactcttaaagagtttggtgatg |
14880061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 272
Target Start/End: Original strand, 36307158 - 36307234
Alignment:
| Q |
196 |
aaacttatggttgattgtaatgatgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttgg |
272 |
Q |
| |
|
||||| ||||| |||||||||| |||||| || |||| ||||| || ||||||||||| || |||||||||||||| |
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|
| T |
36307158 |
aaactcatggtggattgtaatggagaaggtgttatgttcattgaggcagatgctgatgtaacacttgaacaatttgg |
36307234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 14857397 - 14857656
Alignment:
| Q |
18 |
actttcagatatagatgaccaagaaggattacgttatcaaactcgtttgatacaattttacaagtatgatccaaatatggcagggaaagaccctgttgat |
117 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||| ||||| || ||| |||||||| || |||||||||||||||||||||||||||||||||||| |
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|
| T |
14857397 |
actttcagacatagatgaccaagaagggttacgttttcaaattccagcgatccaattttataaatatgatccaaatatggcagggaaagaccctgttgat |
14857496 |
T |
|
| Q |
118 |
attattagaaaagcattagcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtcctagtaggaaacttatggttgattgtaatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||| |
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|
| T |
14857497 |
attattagaaaagcattagcaaaaacacttgtgttttattatccatttgcaggtagattaagggaaggtcctggtaggaagcttatggtagattgtaatg |
14857596 |
T |
|
| Q |
218 |
atgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgatg |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | | || |||||||||||| |
|
|
| T |
14857597 |
atgaaggtattttgtttattgaagctgatgctgatgttagtttgaaagaatttggtgatg |
14857656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 63 - 277
Target Start/End: Complemental strand, 91945 - 91731
Alignment:
| Q |
63 |
tttgatacaattttacaagtatgatccaaatatggcagggaaagaccctgttgatattattagaaaagcattagcaaaaacacttgtgttttattatcca |
162 |
Q |
| |
|
|||||||||||||||||| ||| |||||| ||||| ||| ||||||||||||| | ||||||||||||| | || ||||| |||||||||||||||||| |
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|
| T |
91945 |
tttgatacaattttacaactataatccaattatggaaggcaaagaccctgttgttgttattagaaaagcccttgcgaaaacgcttgtgttttattatcca |
91846 |
T |
|
| Q |
163 |
tttgcaggtagattaagggaaggtcctagtaggaaacttatggttgattgtaatgatgaaggtattttgtttattgaagctgatgctgatgttactcttg |
262 |
Q |
| |
|
|| |||||||| || ||||||||||| | |||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
91845 |
ttggcaggtaggttgagggaaggtcccggcaggaaacttatggttgattgtactggagaaggtgttttgtttattgaagctgatgctgatgttactctta |
91746 |
T |
|
| Q |
263 |
aacaatttggtgatg |
277 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
91745 |
aacaatttggtgatg |
91731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 35368773 - 35368856
Alignment:
| Q |
66 |
gatacaattttacaagtatgatccaaatatggcagggaaagaccctgttgatattattagaaaagcattagcaaaaacacttgt |
149 |
Q |
| |
|
|||||||||||| || |||||||||| ||||| ||||||||||| ||||||| |||||||||||||| | |||||||||||||| |
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|
| T |
35368773 |
gatacaattttataattatgatccaattatggaagggaaagaccttgttgatgttattagaaaagcaattgcaaaaacacttgt |
35368856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 33003152 - 33003102
Alignment:
| Q |
99 |
agggaaagaccctgttgatattattagaaaagcattagcaaaaacacttgt |
149 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| | |||||||||||||| |
|
|
| T |
33003152 |
agggaaagaccctgttgatgttattagaaaagcaattgcaaaaacacttgt |
33003102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 277
Target Start/End: Original strand, 47240829 - 47240904
Alignment:
| Q |
202 |
atggttgattgtaatgatgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgatg |
277 |
Q |
| |
|
||||| ||||||| || ||||||| | |||| ||||||||||| |||||||| || ||||| ||||||||||||| |
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|
| T |
47240829 |
atggtggattgtactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatg |
47240904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 47296364 - 47296289
Alignment:
| Q |
202 |
atggttgattgtaatgatgaaggtattttgtttattgaagctgatgctgatgttactcttgaacaatttggtgatg |
277 |
Q |
| |
|
||||| ||||||| || ||||||| | |||| ||||||||||| |||||||| || ||||| ||||||||||||| |
|
|
| T |
47296364 |
atggtggattgtactggtgaaggtgtcatgttcattgaagctgaagctgatgtaacacttgatcaatttggtgatg |
47296289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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