View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21547_low_7 (Length: 277)

Name: NF21547_low_7
Description: NF21547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21547_low_7
NF21547_low_7
[»] chr7 (31 HSPs)
chr7 (95-247)||(21715154-21715306)
chr7 (95-247)||(45277792-45277944)
chr7 (95-244)||(8231459-8231608)
chr7 (95-247)||(31392140-31392292)
chr7 (95-244)||(31393484-31393633)
chr7 (95-247)||(4675622-4675774)
chr7 (100-247)||(40028539-40028686)
chr7 (95-247)||(32881198-32881350)
chr7 (95-246)||(32882540-32882691)
chr7 (145-244)||(21716494-21716593)
chr7 (145-248)||(40029904-40030007)
chr7 (145-244)||(45276494-45276593)
chr7 (145-247)||(8230152-8230254)
chr7 (189-244)||(46245207-46245262)
chr7 (189-243)||(14774598-14774652)
chr7 (189-243)||(15225051-15225105)
chr7 (189-243)||(15135464-15135518)
chr7 (189-243)||(11747478-11747532)
chr7 (189-244)||(30792749-30792804)
chr7 (200-243)||(31734685-31734728)
chr7 (189-243)||(15136859-15136912)
chr7 (192-244)||(37131920-37131972)
chr7 (192-244)||(46246497-46246549)
chr7 (190-240)||(9532534-9532584)
chr7 (190-244)||(12180559-12180613)
chr7 (205-246)||(11748887-11748928)
chr7 (207-244)||(21914414-21914451)
chr7 (188-236)||(11669934-11669982)
chr7 (189-236)||(14781924-14781972)
chr7 (189-236)||(15231957-15232005)
chr7 (95-127)||(45276593-45276625)
[»] chr8 (6 HSPs)
chr8 (95-247)||(25265730-25265882)
chr8 (100-244)||(33295276-33295420)
chr8 (145-240)||(25264429-25264524)
chr8 (95-247)||(33294022-33294159)
chr8 (173-236)||(45447099-45447162)
chr8 (95-127)||(25264524-25264556)
[»] chr2 (13 HSPs)
chr2 (95-247)||(14089018-14089170)
chr2 (95-247)||(1840239-1840391)
chr2 (145-247)||(13947829-13947931)
chr2 (95-244)||(13948420-13948573)
chr2 (95-244)||(14089627-14089780)
chr2 (95-244)||(1841595-1841729)
chr2 (189-247)||(40303375-40303433)
chr2 (189-244)||(45499390-45499445)
chr2 (192-247)||(28563458-28563513)
chr2 (192-244)||(40304684-40304736)
chr2 (192-244)||(45492954-45493006)
chr2 (192-244)||(45500696-45500748)
chr2 (95-127)||(13947931-13947963)
[»] chr3 (13 HSPs)
chr3 (95-247)||(33733047-33733199)
chr3 (145-247)||(53529409-53529511)
chr3 (95-244)||(53528055-53528189)
chr3 (166-244)||(33734398-33734476)
chr3 (189-244)||(31796753-31796808)
chr3 (189-244)||(40499171-40499226)
chr3 (189-244)||(41083189-41083244)
chr3 (189-244)||(48568449-48568504)
chr3 (189-244)||(31657039-31657094)
chr3 (95-136)||(33734360-33734401)
chr3 (192-244)||(31795458-31795510)
chr3 (192-244)||(41081887-41081939)
chr3 (192-244)||(48567081-48567133)
[»] chr1 (25 HSPs)
chr1 (100-247)||(16673086-16673233)
chr1 (95-247)||(36145426-36145578)
chr1 (95-244)||(7655089-7655238)
chr1 (95-247)||(7653768-7653920)
chr1 (95-247)||(19057692-19057844)
chr1 (147-247)||(33259249-33259349)
chr1 (147-247)||(33279408-33279508)
chr1 (100-247)||(28919165-28919297)
chr1 (145-244)||(36146787-36146886)
chr1 (166-244)||(33257965-33258043)
chr1 (166-244)||(33278137-33278215)
chr1 (167-244)||(28920552-28920629)
chr1 (176-247)||(16672737-16672808)
chr1 (175-240)||(1969636-1969701)
chr1 (95-137)||(33259215-33259257)
chr1 (95-137)||(33279374-33279416)
chr1 (95-236)||(24085604-24085745)
chr1 (173-236)||(46605825-46605888)
chr1 (95-136)||(33258040-33258081)
chr1 (95-136)||(33278212-33278253)
chr1 (167-236)||(33485222-33485291)
chr1 (191-244)||(41668358-41668411)
chr1 (189-237)||(22684069-22684117)
chr1 (106-150)||(28920506-28920550)
chr1 (189-244)||(50316969-50317024)
[»] chr5 (20 HSPs)
chr5 (95-247)||(25916103-25916255)
chr5 (145-247)||(1418811-1418913)
chr5 (145-242)||(25914577-25914674)
chr5 (102-247)||(30332365-30332495)
chr5 (145-244)||(30333883-30333981)
chr5 (145-244)||(1417496-1417595)
chr5 (189-247)||(38624798-38624856)
chr5 (192-243)||(17554925-17554976)
chr5 (193-244)||(11772623-11772674)
chr5 (189-241)||(39101803-39101855)
chr5 (192-247)||(36619627-36619682)
chr5 (189-240)||(36621145-36621196)
chr5 (189-246)||(39103330-39103387)
chr5 (189-245)||(8872604-8872659)
chr5 (192-243)||(17552056-17552108)
chr5 (192-244)||(38626092-38626144)
chr5 (95-127)||(1417595-1417627)
chr5 (192-244)||(8874196-8874248)
chr5 (192-244)||(11771283-11771335)
chr5 (95-127)||(25914674-25914706)
[»] chr4 (22 HSPs)
chr4 (95-247)||(44253017-44253169)
chr4 (95-244)||(55948778-55948927)
chr4 (123-244)||(18597717-18597838)
chr4 (104-247)||(55947442-55947585)
chr4 (145-247)||(19994580-19994682)
chr4 (145-244)||(44251690-44251789)
chr4 (145-244)||(19995929-19996028)
chr4 (145-244)||(53355185-53355284)
chr4 (189-244)||(10338087-10338142)
chr4 (189-244)||(42977283-42977338)
chr4 (166-246)||(39637352-39637432)
chr4 (189-244)||(16880408-16880463)
chr4 (189-244)||(32082552-32082607)
chr4 (189-244)||(42978838-42978893)
chr4 (189-244)||(54121912-54121967)
chr4 (189-244)||(54123464-54123519)
chr4 (189-244)||(16879243-16879298)
chr4 (189-244)||(48713381-48713436)
chr4 (189-243)||(48711944-48711998)
chr4 (95-127)||(19994682-19994714)
chr4 (95-127)||(44251789-44251821)
chr4 (95-127)||(53355284-53355316)
[»] chr6 (9 HSPs)
chr6 (145-246)||(19082749-19082850)
chr6 (166-241)||(19084016-19084091)
chr6 (189-244)||(2956154-2956209)
chr6 (189-244)||(8745517-8745572)
chr6 (192-247)||(1256796-1256851)
chr6 (144-236)||(7678517-7678609)
chr6 (189-247)||(1258358-1258417)
chr6 (190-243)||(8752720-8752773)
chr6 (95-127)||(19082850-19082882)
[»] scaffold0489 (3 HSPs)
scaffold0489 (166-247)||(5461-5544)
scaffold0489 (166-241)||(6711-6786)
scaffold0489 (95-136)||(5541-5582)
[»] scaffold0633 (1 HSPs)
scaffold0633 (207-244)||(6831-6868)


Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 21715306 - 21715154
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  21715306 gtccctctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccacgtcatcgtccgtttgccacatgtgcgttt 21715207  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21715206 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 21715154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 45277792 - 45277944
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  45277792 gtccctcttactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactatcacgtcatcgtccgtttgccacatgtgcgttt 45277891  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45277892 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 45277944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 95 - 244
Target Start/End: Original strand, 8231459 - 8231608
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||  || |||||| ||||||||||||||||||||||    
T  8231459 gtccctctcactgggtgactcatcaataagtttgccacgtcagcatcgtctgccacgtcaggcactgtcacgtcatcctccgtttgccacatgtgcgttt 8231558  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8231559 ttgtaacggaagttgacgggagtgacgaaaatcaaaaagttattaactta 8231608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 31392292 - 31392140
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| |||||||||||| ||||||||||||||| | ||||||||||||||||||| || ||||||||||| |||||| ||||||||||||||||||||||    
T  31392292 gtccctctcactgtgtgcctcatcaataagtttgctacgtcagcatcgtctgccatgttaggcactaccacgtcatcctccgtttgccacatgtgcgttt 31392193  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31392192 ttgtaacggaagttggcgggagggacgaaaatcaaaaagttattaacttatag 31392140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 95 - 244
Target Start/End: Original strand, 31393484 - 31393633
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||  || |||||| || |||||||||||||||||||    
T  31393484 gtccctctcactgtgtgactcatcaataagtttgccacgtcagcatcgtatgccacgtcaggcactgacatgtcatcctctgtttgccacatgtgcgttt 31393583  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  31393584 ttgtaacggaagttgacgggagggacgaaaattaaaaagttattaactta 31393633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 4675622 - 4675774
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| ||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||  |||||| |||||| || ||||||| |||||||||||    
T  4675622 gtccctctcactgtgtgaataatcaataagtttgccacgtcagcatcgtctgccacgtcaggttctaccacgtcatcctctgtttgccgcatgtgcgttt 4675721  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4675722 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 4675774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 100 - 247
Target Start/End: Complemental strand, 40028686 - 40028539
Alignment:
Q  100 tctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgta 199  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||| ||| |||||| || ||||||||||||||||||||||||    
T  40028686 tctcactgtgtgactcatcaataagtttgccacgtcggcatcgtctgccacgccagacactgccacgtcatcttctgtttgccacatgtgcgtttttgta 40028587  T
Q  200 acggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  40028586 acggaagttgacgggagggacgaaaataaaaaagttattaacttatag 40028539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 32881350 - 32881198
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| |||||||||||||||||| |||||||||  || |||||||| ||||||| |||||| |||||||| |||||| ||||||||||||||||||||||    
T  32881350 gtccctctcactgtgtgactcattaataagtttgtcatgtcagcattgtctgccgcgtcagacactaccacgtcatcctccgtttgccacatgtgcgttt 32881251  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32881250 ttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaacttatag 32881198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 95 - 246
Target Start/End: Original strand, 32882540 - 32882691
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||| || |||| ||| |||||| |  |||||||||||||||||||    
T  32882540 gtccctctcactgtgtgactcatcaataagtttgtcacgtcagcatcgtctgccacgttagacactgccacgtcatcctatgtttgccacatgtgcgttt 32882639  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttata 246  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  32882640 ttgtaacggaagttgacggaagggacgaaaatcaaaaagtcattaacttata 32882691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 21716494 - 21716593
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21716494 tgccacgtcaggcactgccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 21716593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 145 - 248
Target Start/End: Original strand, 40029904 - 40030007
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  40029904 tgccacgtcaggcactaccacgtcatccttcgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttactaactta 40030003  T
Q  245 taga 248  Q
    ||||    
T  40030004 taga 40030007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 45276593 - 45276494
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45276593 tgccacgtcaggcactgccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 45276494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 8230254 - 8230152
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  8230254 tgccacgtcagacactaccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgagagggacgaaaataaaaaagttattaactta 8230155  T
Q  245 tag 247  Q
    |||    
T  8230154 tag 8230152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 46245262 - 46245207
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46245262 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 46245207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 14774652 - 14774598
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14774652 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactt 14774598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 15225105 - 15225051
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactt 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15225105 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactt 15225051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 15135518 - 15135464
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactt 243  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  15135518 gcgtttttgtaacaaaagttgacgggagggacgaaaatcaaaaagttattaactt 15135464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 11747532 - 11747478
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactt 243  Q
    ||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||    
T  11747532 gcgtttttgtaacggaagtagacgggagggacggaaatcaaaaaattattaactt 11747478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 30792749 - 30792804
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||||||  |  ||||||||||||||||||| ||||||||||||||||||    
T  30792749 gcgtttttgtaacaaagtttgacgggagggacgaaaagcaaaaagttattaactta 30792804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 200 - 243
Target Start/End: Original strand, 31734685 - 31734728
Alignment:
Q  200 acggaagttgacgggagggacgaaaatcaaaaagttattaactt 243  Q
    |||||||||||||||||| |||||||||||||| ||||||||||    
T  31734685 acggaagttgacgggaggaacgaaaatcaaaaatttattaactt 31734728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 243
Target Start/End: Original strand, 15136859 - 15136912
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactt 243  Q
    |||||||| |||| |||||||||||| |||| |||||||||||||||||||||||    
T  15136859 gcgtttttttaacagaagttgacggg-gggatgaaaatcaaaaagttattaactt 15136912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 37131972 - 37131920
Alignment:
Q  192 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||||||||||||||| ||||||||||| ||||| |||  |||||||    
T  37131972 tttttgtaacggaagttgacggaagggacgaaaaccaaaacgtttataactta 37131920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 46246497 - 46246549
Alignment:
Q  192 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||| ||||||    
T  46246497 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaactta 46246549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 240
Target Start/End: Original strand, 9532534 - 9532584
Alignment:
Q  190 cgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaa 240  Q
    |||||||||||| ||  |||| |||||||||||||| ||||||||||||||    
T  9532534 cgtttttgtaacagagtttgatgggagggacgaaaagcaaaaagttattaa 9532584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 244
Target Start/End: Original strand, 12180559 - 12180613
Alignment:
Q  190 cgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||||| || | |||||||||||||||||||||||| |||  |||||||    
T  12180559 cgtttttgtaacagatgctgacgggagggacgaaaatcaaaacgtttgtaactta 12180613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 246
Target Start/End: Original strand, 11748887 - 11748928
Alignment:
Q  205 agttgacgggagggacgaaaatcaaaaagttattaacttata 246  Q
    ||||||||| |||||||||| |||||||||||| ||||||||    
T  11748887 agttgacggtagggacgaaattcaaaaagttatcaacttata 11748928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 244
Target Start/End: Complemental strand, 21914451 - 21914414
Alignment:
Q  207 ttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  21914451 ttgacgggaggaacgaaaaacaaaaagttattaactta 21914414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 11669982 - 11669934
Alignment:
Q  188 tgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagtta 236  Q
    ||||||||||||||||||||| |||  |||||| |||||||||| ||||    
T  11669982 tgcgtttttgtaacggaagttaacgttagggactaaaatcaaaaggtta 11669934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 14781924 - 14781972
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaa-atcaaaaagtta 236  Q
    |||||||| |||| |||||||||| ||||||||||| ||||||||||||    
T  14781924 gcgtttttttaacagaagttgacgagagggacgaaatatcaaaaagtta 14781972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 15231957 - 15232005
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaa-atcaaaaagtta 236  Q
    |||||||| |||| |||||||||| ||||||||||| ||||||||||||    
T  15231957 gcgtttttttaacagaagttgacgagagggacgaaatatcaaaaagtta 15232005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 45276625 - 45276593
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttt 127  Q
    |||| ||||||||||||||||||||||||||||    
T  45276625 gtccctctcactgtgtgactcatcaataagttt 45276593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 141; Significance: 5e-74; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 25265730 - 25265882
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  25265730 gtccctctcactttgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccacgtcatcgtccgtttgccacatgtgcgttt 25265829  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25265830 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 25265882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 100 - 244
Target Start/End: Original strand, 33295276 - 33295420
Alignment:
Q  100 tctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgta 199  Q
    |||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||| || |||||| |  ||||||||||||||||||||||||    
T  33295276 tctcactgtgtgactcatcaataagtttgccacgtcagcattatctgccacgtcaggcactatcacgtcatcctttgtttgccacatgtgcgtttttgta 33295375  T
Q  200 acggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  33295376 acggaagttgacgggagggacggaaatcaaaaagttattaactta 33295420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 25264524 - 25264429
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaa 240  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25264524 tgccacgtcaggcactgccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaa 25264429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 33294159 - 33294022
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| |||||||| |||||||||||||||||||  |||| ||||||||||||||||||||               || || |||||||||||||||||||    
T  33294159 gtccctctcactgcgtgactcatcaataagtttgtcacgccagcatcgtctgccacgtca---------------tcctctgtttgccacatgtgcgttt 33294075  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  33294074 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaatttatag 33294022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 45447162 - 45447099
Alignment:
Q  173 tccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagtta 236  Q
    |||||| ||||||||||||||||| ||||||| | |||||| |||||||||  |||||||||||    
T  45447162 tccgttagccacatgtgcgtttttttaacggatggtgacggcagggacgaatttcaaaaagtta 45447099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 25264556 - 25264524
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttt 127  Q
    |||| ||||||||||||||||||||||||||||    
T  25264556 gtccctctcactgtgtgactcatcaataagttt 25264524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 14089170 - 14089018
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  14089170 gtccctctcactgtgtgactcatcaataagtttgccacgtcagcatcgtctgccacgtcaggcactaccacgtcatcctccgtttgccacatgtgcgttt 14089071  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14089070 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 14089018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 1840391 - 1840239
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| |||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||| |||||| || |||||||||||||| ||||    
T  1840391 gtccctctcactgtgtgactcatcaataagtttgccacgttagcatcatctgccacgtcaggcactaccacgtcatcctctgtttgccacatgtgtgttt 1840292  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1840291 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 1840239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 13947931 - 13947829
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13947931 tgccacgtcaggcactaccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 13947832  T
Q  245 tag 247  Q
    |||    
T  13947831 tag 13947829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 95 - 244
Target Start/End: Original strand, 13948420 - 13948573
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtt- 193  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||| ||| |||||| || ||||| ||||||||||||     
T  13948420 gtccctctcactgtgtgactcatcaataagtttgccacgtcagcatcgtcagccacatcaggcactgccacgtcatcctctgtttgtcacatgtgcgttt 13948519  T
Q  194 ---tttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
       |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  13948520 taatttgtaacggaagttgacaggagggacgaaaataaaaaagttattaactta 13948573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 95 - 244
Target Start/End: Original strand, 14089627 - 14089780
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtt- 193  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||| ||| |||||| || ||||| ||||||||||||     
T  14089627 gtccctctcactgtgtgactcatcaataagtttgccacgtcagcatcgtcagccacatcaggcactgccacgtcatcctctgtttgtcacatgtgcgttt 14089726  T
Q  194 ---tttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
       |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  14089727 taatttgtaacggaagttgacaggagggacgaaaataaaaaagttattaactta 14089780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 95 - 244
Target Start/End: Original strand, 1841595 - 1841729
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||               || | ||||||||||||||||||||    
T  1841595 gtccctctcactgtgtgactcatcaataagtttgccacgtcagcatcgtttgccacgtca---------------tccttcgtttgccacatgtgcgttt 1841679  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1841680 ttgtaacggaagttgacgggagggacgaaaataaaaaagttattaactta 1841729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 40303433 - 40303375
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40303433 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 40303375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 45499445 - 45499390
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45499445 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 45499390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 28563513 - 28563458
Alignment:
Q  192 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||| ||  ||||||||||||||||||| |||||||||||||||||||||    
T  28563513 tttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaacttatag 28563458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 40304684 - 40304736
Alignment:
Q  192 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||| ||||||    
T  40304684 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaactta 40304736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 45492954 - 45493006
Alignment:
Q  192 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||| ||||||    
T  45492954 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaactta 45493006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 45500696 - 45500748
Alignment:
Q  192 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||| ||||||    
T  45500696 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaactta 45500748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 13947963 - 13947931
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttt 127  Q
    |||| ||||||||||||||||||||||||||||    
T  13947963 gtccctctcactgtgtgactcatcaataagttt 13947931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 129; Significance: 8e-67; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 33733199 - 33733047
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  33733199 gtccctctcactgtgtgactcatcaataagtttgtcacgtcagcatcgtctgccacgtcaggcactagcacgtcatcgtccgtttgccacatgtgcgttt 33733100  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  33733099 ttgtaacggaagttgacgggaaggacgaaaatcaaaaagttattaacttatag 33733047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 53529409 - 53529511
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||| |||||||||||  ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53529409 tgccacgttaggcactaccacatcatcctccgtttgccacatgtgcatttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 53529508  T
Q  245 tag 247  Q
    |||    
T  53529509 tag 53529511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 95 - 244
Target Start/End: Complemental strand, 53528189 - 53528055
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||               || || |||||||||||||||||||    
T  53528189 gtccctctcaccgtgtgactcatcaataagtttgccacgtcagcatcgtctgccacgtca---------------tcctctgtttgccacatgtgcgttt 53528105  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53528104 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 53528055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 166 - 244
Target Start/End: Original strand, 33734398 - 33734476
Alignment:
Q  166 gtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33734398 gtcatcctctgtttgccacatgtgcgtttttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaactta 33734476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 31796753 - 31796808
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31796753 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 31796808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 40499171 - 40499226
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40499171 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 40499226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 41083189 - 41083244
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41083189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 41083244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 48568449 - 48568504
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48568449 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 48568504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 31657094 - 31657039
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||||||||||||||||    
T  31657094 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaactta 31657039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 33734360 - 33734401
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtca 136  Q
    |||| |||||||||||||||||||||||||||| ||||||||    
T  33734360 gtccctctcactgtgtgactcatcaataagtttgccacgtca 33734401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 31795510 - 31795458
Alignment:
Q  192 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||| ||||||    
T  31795510 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaactta 31795458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 41081939 - 41081887
Alignment:
Q  192 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||| ||||||    
T  41081939 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaactta 41081887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 48567133 - 48567081
Alignment:
Q  192 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||| ||||||    
T  48567133 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaactta 48567081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 3e-66; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 100 - 247
Target Start/End: Original strand, 16673086 - 16673233
Alignment:
Q  100 tctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgta 199  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||    
T  16673086 tctcattgtgtgactcatcaataagttttccacgtgagcatcgtctgccacgtcaggcactaccacgtcatcctctgtttgccacatgtgcgtttttgta 16673185  T
Q  200 acggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  16673186 acggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 16673233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 36145578 - 36145426
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |||    
T  36145578 gtccctctcactgtgtgactcatcaataagtttgccacgtcaacatcgtctgccacgttaggcactaccacgtcatcctccgtttgccacatgtgcattt 36145479  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36145478 ttgtaatggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 36145426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 95 - 244
Target Start/End: Original strand, 7655089 - 7655238
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| ||| |||||| || |||||||||||||||||||    
T  7655089 gtccctctcactgtgtgactcatcaataagtttgccacgtcagcatcgtctgccatgtcaggcactgccacgtcatcctctgtttgccacatgtgcgttt 7655188  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7655189 ttgtaatggaagttgacgggagggacgaaaatcaaaaagttattaactta 7655238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 7653920 - 7653768
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |||    
T  7653920 gtccctctcactgtgtgactcatcaataagtttgccacgtcaacatcgtctgccacgttaggcactaccacgtcatcctccgtttgccacatgtgcattt 7653821  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  7653820 ttgtaatggaagttgacgggagggacaaaaatcaaaaagttattaacttatag 7653768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 19057692 - 19057844
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| ||||||||||||| | |||||||||||| |||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||    
T  19057692 gtccctctcactgtgtgattgatcaataagtttgccacgtcagcatcgtctgccacatcaggcactaccacgtcatcctccgtttgccacatgtgcgttt 19057791  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    ||||||| ||||||||||| |||||||||||| ||||||||||||||||||||    
T  19057792 ttgtaacagaagttgacggaagggacgaaaataaaaaagttattaacttatag 19057844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 33259249 - 33259349
Alignment:
Q  147 ccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttata 246  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33259249 ccacgtcaggcactaccacgtcatcgtccgtttgccacatgtgcatttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttata 33259348  T
Q  247 g 247  Q
    |    
T  33259349 g 33259349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 147 - 247
Target Start/End: Original strand, 33279408 - 33279508
Alignment:
Q  147 ccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttata 246  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33279408 ccacgtcaggcactaccacgtcatcgtccgtttgccacatgtgcatttttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttata 33279507  T
Q  247 g 247  Q
    |    
T  33279508 g 33279508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 100 - 247
Target Start/End: Complemental strand, 28919297 - 28919165
Alignment:
Q  100 tctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgta 199  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||               || |||||||||||||||||||||||||||    
T  28919297 tctcactgtgtgactcatcaataagtttgtcacgtcagcatcgtctgccacgtca---------------tcctccgtttgccacatgtgcgtttttgta 28919213  T
Q  200 acggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  28919212 acggaagttgacggaagggacgaaaatcaaaaagttattaacttatag 28919165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 36146787 - 36146886
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||||||||| ||| |||||| |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36146787 tgccacgtcaggcactgccacgtcatcctttctttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 36146886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 33258043 - 33257965
Alignment:
Q  166 gtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33258043 gtcatcctccgtttgccacatttgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 33257965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 166 - 244
Target Start/End: Complemental strand, 33278215 - 33278137
Alignment:
Q  166 gtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33278215 gtcatcctccgtttgccacatttgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 33278137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 28920552 - 28920629
Alignment:
Q  167 tcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28920552 tcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaggttattaactta 28920629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 176 - 247
Target Start/End: Complemental strand, 16672808 - 16672737
Alignment:
Q  176 gtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16672808 gtttgccacatgtgcgtttttgtaacggaagttgacgggagggacggaaatcaaaaagttattaacttatag 16672737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 1969701 - 1969636
Alignment:
Q  175 cgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1969701 cgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaa 1969636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 33259215 - 33259257
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcag 137  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  33259215 gtccctctcactgtgtgactcatcaataagttttccacgtcag 33259257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 33279374 - 33279416
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcag 137  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  33279374 gtccctctcactgtgtgactcatcaataagttttccacgtcag 33279416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 236
Target Start/End: Complemental strand, 24085745 - 24085604
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| ||||| ||| || |||||||  ||| || |||| |||||||||| ||||| ||||| |||| ||| ||||||    |||||||||||||| ||||    
T  24085745 gtccctctcattgtatgtctcatcatcaaggttgccacatcagcatcgtttgccatgtcagacactgccacgtcatccgttgtttgccacatgtgtgttt 24085646  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagtta 236  Q
    ||||||| |||| | ||  |||||| ||||||||||| ||||    
T  24085645 ttgtaacagaagctaacaagagggatgaaaatcaaaaggtta 24085604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 46605825 - 46605888
Alignment:
Q  173 tccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagtta 236  Q
    |||||| ||||||||||||||||| ||||||| | |||||| |||||||||  |||||||||||    
T  46605825 tccgttagccacatgtgcgtttttttaacggatggtgacggcagggacgaatttcaaaaagtta 46605888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 33258081 - 33258040
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtca 136  Q
    |||| |||||||||||||||||||||||||||| ||||||||    
T  33258081 gtccctctcactgtgtgactcatcaataagtttgccacgtca 33258040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 33278253 - 33278212
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtca 136  Q
    |||| |||||||||||||||||||||||||||| ||||||||    
T  33278253 gtccctctcactgtgtgactcatcaataagtttgccacgtca 33278212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 33485222 - 33485291
Alignment:
Q  167 tcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagtta 236  Q
    ||||| |||||| ||||||||| ||||||||||||  ||| | |||||||||||||||| ||||| ||||    
T  33485222 tcatcctccgttagccacatgtacgtttttgtaacacaagctaacgggagggacgaaaagcaaaacgtta 33485291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 191 - 244
Target Start/End: Complemental strand, 41668411 - 41668358
Alignment:
Q  191 gtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||| ||  |||||||||| |||||||| ||||||||||||||||||    
T  41668411 gtttttgtaacagagtttgacgggagagacgaaaagcaaaaagttattaactta 41668358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 237
Target Start/End: Original strand, 22684069 - 22684117
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttat 237  Q
    |||||||| |||| ||||||||||| |||||||||| ||||||||||||    
T  22684069 gcgtttttttaacagaagttgacggtagggacgaaattcaaaaagttat 22684117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 150
Target Start/End: Original strand, 28920506 - 28920550
Alignment:
Q  106 tgtgtgactcatcaataagttttccacgtcagcatcgtctgccac 150  Q
    |||||||||||||||||||||| ||| | ||||||||||||||||    
T  28920506 tgtgtgactcatcaataagtttgccatgccagcatcgtctgccac 28920550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 50316969 - 50317024
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||| || | |||||||||||||||||||||||| |||  |||||||    
T  50316969 gcgtttttgtaacagatgctgacgggagggacgaaaatcaaaacgtttgtaactta 50317024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 25916103 - 25916255
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||| ||||||| ||||||||||||||    
T  25916103 gtccctctcactgtgtgactcatcaataagtttgccacgtcagcatcgtctgccacgtcaggcactaccacatcatcctccgtttaccacatgtgcgttt 25916202  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25916203 ttgtaacggaagttgacgggagggacgaaaattaaaaagttattaacttatag 25916255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 1418811 - 1418913
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||| |||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1418811 tgccacgtcagacactaccacgtcatcctccgtttgccgcatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 1418910  T
Q  245 tag 247  Q
    |||    
T  1418911 tag 1418913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 145 - 242
Target Start/End: Complemental strand, 25914674 - 25914577
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaact 242  Q
    |||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25914674 tgccacgtcaggcactgccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaataaaaaagttattaact 25914577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 102 - 247
Target Start/End: Complemental strand, 30332495 - 30332365
Alignment:
Q  102 tcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaac 201  Q
    |||||||||||||||||||||||||| |||||||||||| |||||||||||||               || ||||||| |||||||||||||||||||||    
T  30332495 tcactgtgtgactcatcaataagtttgccacgtcagcattgtctgccacgtca---------------tcctccgttttccacatgtgcgtttttgtaac 30332411  T
Q  202 ggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||| |||||||||||||||||||||||||||||||||||    
T  30332410 ggaagttgacaggagggacgaaaatcaaaaagttattaacttatag 30332365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 30333883 - 30333981
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||||||||| ||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  30333883 tgccacgtcaggcactgccatgtcatcctccgtttgccacatgtgcgtttt-gtaatggaagttgacgggagggacgaaaatcaaaaagttattaactta 30333981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 1417595 - 1417496
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||| ||||  |  |||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  1417595 tgccacgtcagacactgtcccgtcatcctccgtttgccacatgtgcggtattgtaacggaagttgacgggagggacgaaaataaaaaagttattaactta 1417496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 189 - 247
Target Start/End: Complemental strand, 38624856 - 38624798
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38624856 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 38624798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 192 - 243
Target Start/End: Original strand, 17554925 - 17554976
Alignment:
Q  192 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactt 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17554925 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactt 17554976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 244
Target Start/End: Original strand, 11772623 - 11772674
Alignment:
Q  193 ttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11772623 ttttgtaacggaagttgacaggagggacgaaaatcaaaaagttattaactta 11772674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 39101855 - 39101803
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaac 241  Q
    ||||||||||||| ||  ||||||||||||||||||| |||||||||||||||    
T  39101855 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaac 39101803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 36619682 - 36619627
Alignment:
Q  192 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||| ||  ||||||||||||||||||| ||||||| |||||||||||||    
T  36619682 tttttgtaacagagtttgacgggagggacgaaaagcaaaaagctattaacttatag 36619627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 36621145 - 36621196
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaa 240  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||||||||||||    
T  36621145 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaa 36621196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 246
Target Start/End: Original strand, 39103330 - 39103387
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttata 246  Q
    ||||||||||||  ||  ||||||||||||||||||  ||||||||||||||||||||    
T  39103330 gcgtttttgtaatagagtttgacgggagggacgaaacgcaaaaagttattaacttata 39103387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 8872659 - 8872604
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttat 245  Q
    ||||||||||||| ||  |||||||| |||||||||| |||||||||||||||||||    
T  8872659 gcgtttttgtaacagagtttgacggg-gggacgaaaagcaaaaagttattaacttat 8872604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 243
Target Start/End: Complemental strand, 17552108 - 17552056
Alignment:
Q  192 tttttgtaacggaagttgacgggagggacgaaa-atcaaaaagttattaactt 243  Q
    ||||| |||| |||||||||| ||||||||||| |||||||||||||||||||    
T  17552108 tttttttaacagaagttgacgagagggacgaaatatcaaaaagttattaactt 17552056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 38626092 - 38626144
Alignment:
Q  192 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||| |||| ||||||||||| |||||||||| |||||||||||| ||||||    
T  38626092 tttttttaacagaagttgacggtagggacgaaattcaaaaagttatcaactta 38626144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 1417627 - 1417595
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttt 127  Q
    |||| ||||||||||||||||||||||||||||    
T  1417627 gtccctctcactgtgtgactcatcaataagttt 1417595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 8874196 - 8874248
Alignment:
Q  192 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||| ||  |||||| ||||||| |||| ||||||||||||||||||    
T  8874196 tttttgtaacagagtttgacgagagggacaaaaagcaaaaagttattaactta 8874248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 11771335 - 11771283
Alignment:
Q  192 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||| |||| ||||||||| | |||||||||| |||||||||||| ||||||    
T  11771335 tttttttaacagaagttgacagtagggacgaaattcaaaaagttatcaactta 11771283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 25914706 - 25914674
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttt 127  Q
    |||| ||||||||||||||||||||||||||||    
T  25914706 gtccctctcactgtgtgactcatcaataagttt 25914674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 95 - 247
Target Start/End: Original strand, 44253017 - 44253169
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||| || ||||||||||| | |||| ||||||||||||||||||||||    
T  44253017 gtccctctcactgtgtgcctcatcaataagtttgccacgtcagcatcgtctgccatgttaggcactaccacgccatcctccgtttgccacatgtgcgttt 44253116  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44253117 ttgtaacggaagttgacgggagagacgaaaatcaaaaagttattaacttatag 44253169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 95 - 244
Target Start/End: Original strand, 55948778 - 55948927
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgttt 194  Q
    |||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| |||||| || |||||||||||||||||||    
T  55948778 gtccctctcactgtgtgactcatcaataagtttgccacgccagcatcgtctgccacgtcaggcactgccacgtcatcctctgtttgccacatgtgcgttt 55948877  T
Q  195 ttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  55948878 ttgtaacggaagttgacgggagggaagaaaatccaaaagttattaactta 55948927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 123 - 244
Target Start/End: Complemental strand, 18597838 - 18597717
Alignment:
Q  123 agttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacga 222  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18597838 agtttgccacgtcagcatcgtctgccacgtcaggcactaccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacga 18597739  T
Q  223 aaatcaaaaagttattaactta 244  Q
    ||||||||||||||||||||||    
T  18597738 aaatcaaaaagttattaactta 18597717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 104 - 247
Target Start/End: Complemental strand, 55947585 - 55947442
Alignment:
Q  104 actgtgtgactcatcaataagttttccacgtcagcatcgtctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacgg 203  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||  ||||| ||| |||||||||||||| ||||| ||||||    
T  55947585 actgtgtgactcatcaataagtttgccacgtcaacatcgtctgccacgttaggcactaccacatcatcctccatttgccacatgtgcatttttataacgg 55947486  T
Q  204 aagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  55947485 aagttgacgggagggacgaaaatcaaaaagttattaacttatag 55947442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 145 - 247
Target Start/End: Complemental strand, 19994682 - 19994580
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19994682 tgccacgtcaggcactagcacgtcatggtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 19994583  T
Q  245 tag 247  Q
    |||    
T  19994582 tag 19994580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 44251789 - 44251690
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||||||||| ||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44251789 tgccacgtcaggcacttccatgtcatcctctgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 44251690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 145 - 244
Target Start/End: Original strand, 19995929 - 19996028
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||||||||| ||| |||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19995929 tgccacgtcaggcactgccacgtcatcatccatttgccacatgtgcgtttttgtaacggaagttgatgggagggacgaaaatcaaaaagttattaactta 19996028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 145 - 244
Target Start/End: Complemental strand, 53355284 - 53355185
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||| ||||| |||  ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  53355284 tgccacgtcatgcactgccacatcatcctccgtttgccacatgtgcgtttttgtaacggcagttgacgggagggacgaaaatcaaaaagttattaactta 53355185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 10338087 - 10338142
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||||||||||||||||    
T  10338087 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaactta 10338142  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 42977338 - 42977283
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||||||||||||||||    
T  42977338 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaactta 42977283  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 39637432 - 39637352
Alignment:
Q  166 gtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttata 246  Q
    |||||| || |||| |||||||||||||||| |||| |||| | || ||||||||||||||||||| ||||  ||||||||    
T  39637432 gtcatcctcagtttaccacatgtgcgtttttataacagaagctaacaggagggacgaaaatcaaaaggttaacaacttata 39637352  T

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Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 16880408 - 16880463
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||| ||  |||||||||||||||| || ||||||||||||||||||    
T  16880408 gcgtttttgtaacagagtttgacgggagggacgataagcaaaaagttattaactta 16880463  T

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Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 32082552 - 32082607
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||| ||  ||||| ||||||||||||| ||||||||||||||||||    
T  32082552 gcgtttttgtaacagagtttgacaggagggacgaaaagcaaaaagttattaactta 32082607  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 42978838 - 42978893
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||| ||  ||||||||||||||||||| |||||| |||||||||||    
T  42978838 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaaattattaactta 42978893  T

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Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 54121967 - 54121912
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||| ||  || |||||||||||||||| ||||||||||||||||||    
T  54121967 gcgtttttgtaacagagtttaacgggagggacgaaaagcaaaaagttattaactta 54121912  T

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Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 54123464 - 54123519
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||| || ||  ||||||||||||||||||| ||||||||||||||||||    
T  54123464 gcgtttttgttacagagtttgacgggagggacgaaaagcaaaaagttattaactta 54123519  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 16879298 - 16879243
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||| ||||||| ||||    
T  16879298 gcgtttttgtaacagattttgacgggagggacgaaaagcaaaaggttattacctta 16879243  T

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Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 48713381 - 48713436
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||| ||  ||||| ||||||||||||| ||||| ||||||||||||    
T  48713381 gcgtttttgtaacagagtttgactggagggacgaaaagcaaaaggttattaactta 48713436  T

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Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 243
Target Start/End: Complemental strand, 48711998 - 48711944
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactt 243  Q
    ||||||||||||| ||  ||||||||| ||||||||||||||| ||||| |||||    
T  48711998 gcgtttttgtaaccgagtttgacgggaaggacgaaaatcaaaatgttatcaactt 48711944  T

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Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 19994714 - 19994682
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttt 127  Q
    |||| ||||||||||||||||||||||||||||    
T  19994714 gtccctctcactgtgtgactcatcaataagttt 19994682  T

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Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 44251821 - 44251789
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttt 127  Q
    |||| ||||||||||||||||||||||||||||    
T  44251821 gtccctctcactgtgtgactcatcaataagttt 44251789  T

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Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 53355316 - 53355284
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttt 127  Q
    |||| ||||||||||||||||||||||||||||    
T  53355316 gtccctctcactgtgtgactcatcaataagttt 53355284  T

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Target: chr6 (Bit Score: 94; Significance: 6e-46; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 19082850 - 19082749
Alignment:
Q  145 tgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19082850 tgccacgtcaggcactaccacgtcatcctccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 19082751  T
Q  245 ta 246  Q
    ||    
T  19082750 ta 19082749  T

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Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 19084016 - 19084091
Alignment:
Q  166 gtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaac 241  Q
    |||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19084016 gtcatcctccatttgccacatgtgcgttattgtaacggaagttgacgggagggacgaaaatcaaaaagttattaac 19084091  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 2956154 - 2956209
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||||||||||||||||    
T  2956154 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaactta 2956209  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 8745572 - 8745517
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||||||||||||||||    
T  8745572 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagttattaactta 8745517  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 192 - 247
Target Start/End: Complemental strand, 1256851 - 1256796
Alignment:
Q  192 tttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaacttatag 247  Q
    |||||||||| ||  |||||||||||||||||||  ||||||||||||||||||||    
T  1256851 tttttgtaacagagtttgacgggagggacgaaaagtaaaaagttattaacttatag 1256796  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 7678517 - 7678609
Alignment:
Q  144 ctgccacgtcaggcactaccaagtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagtta 236  Q
    ||||||||||||  ||| |||  ||||| |||||| ||||| |||  ||||||||||| |||| | |||||||||||||||| ||||| ||||    
T  7678517 ctgccacgtcagctactgccacatcatcatccgttagccacgtgtatgtttttgtaacagaagctaacgggagggacgaaaagcaaaacgtta 7678609  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 1258358 - 1258417
Alignment:
Q  189 gcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaag-ttattaacttatag 247  Q
    ||||||||||||| ||  ||||||||||||||||||| ||||||| |||||||| |||||    
T  1258358 gcgtttttgtaacagagtttgacgggagggacgaaaagcaaaaagtttattaacctatag 1258417  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 8752720 - 8752773
Alignment:
Q  190 cgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaactt 243  Q
    ||||||||||||  |  ||||||||||||||||||| ||||| |||||||||||    
T  8752720 cgtttttgtaacaaagtttgacgggagggacgaaaagcaaaaggttattaactt 8752773  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 127
Target Start/End: Complemental strand, 19082882 - 19082850
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttt 127  Q
    |||| ||||||||||||||||||||||||||||    
T  19082882 gtccctctcactgtgtgactcatcaataagttt 19082850  T

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Target: scaffold0489 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 247
Target Start/End: Complemental strand, 5544 - 5461
Alignment:
Q  166 gtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaat-caaaaagtt-attaacttatag 247  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||    
T  5544 gtcatcctccgtttgtcacatgtgcgtttttgtaacggaagttgacgggagggacgaaaataaaaaaagttaattaacttatag 5461  T

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Target: scaffold0489; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 241
Target Start/End: Original strand, 6711 - 6786
Alignment:
Q  166 gtcatcgtccgtttgccacatgtgcgtttttgtaacggaagttgacgggagggacgaaaatcaaaaagttattaac 241  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||    
T  6711 gtcatcctccatttgccacatgtgcgttattgtaacggaagttgacgggagggtagaaaatcaaaaagttattaac 6786  T

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Target: scaffold0489; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 136
Target Start/End: Complemental strand, 5582 - 5541
Alignment:
Q  95 gtccatctcactgtgtgactcatcaataagttttccacgtca 136  Q
    |||| |||||||||||||||||||||||||||| ||||||||    
T  5582 gtccctctcactgtgtgactcatcaataagtttgccacgtca 5541  T

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Target: scaffold0633 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 207 - 244
Target Start/End: Original strand, 6831 - 6868
Alignment:
Q  207 ttgacgggagggacgaaaatcaaaaagttattaactta 244  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  6831 ttgacgggagagacgaaaagcaaaaagttattaactta 6868  T

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