View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21548_high_1 (Length: 552)

Name: NF21548_high_1
Description: NF21548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21548_high_1
NF21548_high_1
[»] chr2 (2 HSPs)
chr2 (12-457)||(38693339-38693787)
chr2 (262-317)||(42201644-42201700)
[»] chr8 (1 HSPs)
chr8 (81-200)||(9821130-9821248)
[»] chr4 (3 HSPs)
chr4 (12-84)||(38875289-38875361)
chr4 (81-229)||(38875382-38875531)
chr4 (271-308)||(3001607-3001644)
[»] chr1 (3 HSPs)
chr1 (262-320)||(47308877-47308935)
chr1 (261-309)||(10390798-10390846)
chr1 (261-309)||(12289863-12289911)
[»] chr5 (2 HSPs)
chr5 (261-320)||(1832495-1832555)
chr5 (261-320)||(41409519-41409579)


Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 12 - 457
Target Start/End: Complemental strand, 38693787 - 38693339
Alignment:
Q  12 atcatcatctcttcaatttaaattaaaacaagcaaaataatacgacaatttggatgtatgacccacctcatcatatgaagcactgcttgacgtaaatgca 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38693787 atcatcatctcttcaatttaaattaaaacaagcaaaataatacgacaatttggatgtatgacccacctcatcatatgaagcactgcttgacgtaaatgca 38693688  T
Q  112 aaagaaccttcaccattccagcttaaagcagctaacctggttttttgaaaaatcacatcaactcataagaaggaaaactagtaaagtaactactactcaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38693687 aaagaaccttcaccattccagcttaaagcagctaacctggttttttgaaaaatcacatcaactcataagaaggaaaactagtaaagtaactactcctcaa 38693588  T
Q  212 ctgcaaattttcc-tttcagcaatggaaacaatattgaact----nnnnnnnnncttattttgcccttatataaaaaatattgtgttttggtctaacatt 306  Q
    ||||||||||||| ||||||||||||||| |||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||    
T  38693587 ctgcaaattttccttttcagcaatggaaataatattgaactaaaaaaaaaaaaacttattttgcccttatataaaaaatattgtgttttggtctaacatt 38693488  T
Q  307 tttcctttcaatttcaaccaccacatatatattttttaccatgtttattgttccttgccaataaaagcggnnnnnnnntcacgttagtgtgtggnnnnnn 406  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||||||||          
T  38693487 tttcctttcaatttcaaccaccacatatatattttttaccatg-ttattgttccttgccaataaaagcggaaaaaaaatcacgttagtgtgtgg-ttttt 38693390  T
Q  407 nctcaagagatgttagtatttgtcttgacgttagtaatactataaatgcat 457  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38693389 tctcaagagatgttagtatttgtcttgacgttagtaatactataaatgcat 38693339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 262 - 317
Target Start/End: Original strand, 42201644 - 42201700
Alignment:
Q  262 ttattttgcccttatataaaa-aatattgtgttttggtctaacatttttcctttcaa 317  Q
    |||||||| |||||||||||| ||||||||| |||||| |||||||||| |||||||    
T  42201644 ttattttggccttatataaaaaaatattgtgctttggtgtaacattttttctttcaa 42201700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 81 - 200
Target Start/End: Original strand, 9821130 - 9821248
Alignment:
Q  81 atcatatgaagcactgcttgacgtaaatgcaaaagaaccttcaccattccagcttaaagcagctaacctggttttttgaaaaatcacatcaactcataag 180  Q
    |||||||| ||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| |||| ||| || |||| |||||||||||||||||    
T  9821130 atcatatggagcactgcttgacgtaaatacgaaagaaccttcaccattccagcttaatgcagctagcctgatttgttcaaaattcacatcaactcataag 9821229  T
Q  181 aaggaaaactagtaaagtaa 200  Q
    || |  ||||||||||||||    
T  9821230 aa-gtcaactagtaaagtaa 9821248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 38875289 - 38875361
Alignment:
Q  12 atcatcatctcttcaatttaaattaaaacaagcaaaataatacgacaatttggatgtatgacccacctcatca 84  Q
    ||||||||||||| ||||||||| ||||||| |||||||||| || |||||||||||||||| ||||||||||    
T  38875289 atcatcatctcttgaatttaaatcaaaacaaacaaaataataggataatttggatgtatgacacacctcatca 38875361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 229
Target Start/End: Original strand, 38875382 - 38875531
Alignment:
Q  81 atcatatgaagcactgcttgacgtaaatgcaaaagaaccttcaccattccagcttaaagcagctaacctggttttttgaaaaatcacatcaactcataag 180  Q
    |||||||| |||||| ||||| ||||||   ||||||||| |||||||||||||||| ||||||| |||| ||| | ||||| |||   |||||||||||    
T  38875382 atcatatggagcactacttgaagtaaatatgaaagaacctccaccattccagcttaatgcagctagcctgatttgtcgaaaattca---caactcataag 38875478  T
Q  181 aaggaaaactagtaa--agtaac---tactactcaactgcaaattttcctttca 229  Q
    |||| ||| ||| ||  || |||   ||||||||||||||||||||||||||||    
T  38875479 aaggcaaa-tagaaagtagcaactaatactactcaactgcaaattttcctttca 38875531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 308
Target Start/End: Complemental strand, 3001644 - 3001607
Alignment:
Q  271 ccttatataaaaaatattgtgttttggtctaacatttt 308  Q
    |||||||||||||||||||||||||| | |||||||||    
T  3001644 ccttatataaaaaatattgtgttttgatgtaacatttt 3001607  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 47308935 - 47308877
Alignment:
Q  262 ttattttgcccttatataaaaaatattgtgttttggtctaacatttttcctttcaattt 320  Q
    |||||||  ||||||||||||||||||||||||| || ||||||| || ||| ||||||    
T  47308935 ttattttaaccttatataaaaaatattgtgtttttgtgtaacattgtttcttccaattt 47308877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 10390798 - 10390846
Alignment:
Q  261 cttattttgcccttatataaaaaatattgtgttttggtctaacattttt 309  Q
    ||||||||  || ||||||||||||||||||||||| | ||||||||||    
T  10390798 cttattttaaccatatataaaaaatattgtgttttgttgtaacattttt 10390846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 309
Target Start/End: Complemental strand, 12289911 - 12289863
Alignment:
Q  261 cttattttgcccttatataaaaaatattgtgttttggtctaacattttt 309  Q
    ||||||||| | || ||||||||||||||||||||| | ||||||||||    
T  12289911 cttattttgactttgtataaaaaatattgtgttttgatgtaacattttt 12289863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 320
Target Start/End: Complemental strand, 1832555 - 1832495
Alignment:
Q  261 cttattttgcccttatataaaaaat-attgtgttttggtctaacatttttcctttcaattt 320  Q
    ||||||||||| ||||||||||||| ||| ||||| ||| |||||||||| | ||||||||    
T  1832555 cttattttgcctttatataaaaaataattatgtttcggtttaacattttttcattcaattt 1832495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 41409519 - 41409579
Alignment:
Q  261 cttattttgcccttatataaaaaat-attgtgttttggtctaacatttttcctttcaattt 320  Q
    ||||||||||| ||||||||||||| ||| ||||| ||| |||||||||| | ||||||||    
T  41409519 cttattttgcctttatataaaaaataattatgtttcggtttaacattttttcattcaattt 41409579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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