View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21548_high_2 (Length: 413)
Name: NF21548_high_2
Description: NF21548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21548_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 23 - 389
Target Start/End: Original strand, 605580 - 605934
Alignment:
| Q |
23 |
aatatctcaatgaccgattcttccatattcaacaaccgcaaaatctcttatcccttccactgctgttgttcataatcttcataagcacaacccaatttca |
122 |
Q |
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| T |
605580 |
aatatctcaatgaccgattcttccatattcaacaaccgcaaaatctcttatcccttccactgttgttgttcataatcttcataagcacaacccaatttca |
605679 |
T |
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| Q |
123 |
tcgcagcattgtttcttcaatttctcatcgtgtttctgtttgtgtttgtgtttgatggatctatcacaccatcaatccaatttatctctcaatttctcat |
222 |
Q |
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|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
605680 |
tcccagcattgtttcttcaatttctcatcgtgt------------ttgtgtttgatggatctatcacaccatcaatccaatttatctctcaatttctcat |
605767 |
T |
|
| Q |
223 |
cttctcacgcttctcctcctcgccgtccaccgattcccgacgactccatcgccctccacctcgaatccagcttccgcgatccatcaaaccctgtccccac |
322 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
605768 |
cttctcacgcttctcctcctccccgtccaccgattcccgacgactccatcgccctccacctcgaatccagcttccgcgatccatcaaaccctgtccccac |
605867 |
T |
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| Q |
323 |
cgttcctcttcagctcatggaaccacaaacagagaaagaaaatggtaacgctatcgatatcgaatcg |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
605868 |
cgttcctcttcagctcatggaaccacaaacagagaaagaaaacggtaacgctatcgatatcgaatcg |
605934 |
T |
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