View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21548_high_9 (Length: 239)
Name: NF21548_high_9
Description: NF21548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21548_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 29405399 - 29405618
Alignment:
| Q |
19 |
gtctatgtgttaatatctttaaagggtaaaggaaaatataagattcatagtgaatggatgaagttgtgacttattagcccatgttattaaggttagagca |
118 |
Q |
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| T |
29405399 |
gtctatgtgttaatatatttaaagggtaaaggaaaatatatgattcatagtgaatggatgaagttgtgacttatcagcccctgttattaaggttagagga |
29405498 |
T |
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| Q |
119 |
ctaatacaccagcccttctctcttcttcttagattatcatagataatttgggtacatatttgcttctataatgtaattgattttgcttgattggaaggag |
218 |
Q |
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| T |
29405499 |
ctaatacaccagcccttcaatcttcttctaagattatcatagataatttgggtacatattttcttctataatgtaattgattttgcttgattggaaggag |
29405598 |
T |
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| Q |
219 |
tcttcatattgttgcatgac |
238 |
Q |
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| T |
29405599 |
tcttcatattgttgcatgac |
29405618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 23775900 - 23776118
Alignment:
| Q |
19 |
gtctatgtgttaatatctttaaagggtaaaggaaaatataagattcatagtgaatggatgaagttgtgacttattagcccatgttattaaggttagagca |
118 |
Q |
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|||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| |
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| T |
23775900 |
gtctatgtgttaatatatttaaagggtaaaggaaaata-atgattcatagtgaatggatgaagctgtgacttatcagcccctgttattaaggttagagca |
23775998 |
T |
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| Q |
119 |
ctaatacaccagcccttctctcttcttcttagattatcatagataatttgggtacatatttgcttctataatgtaattgattttgcttgattggaaggag |
218 |
Q |
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| T |
23775999 |
ctaatacatcagcccttctctcttcttttaagattatcatagataatttgggtacatatttgcttctataatgtaattgattttgcttgaatggaaggag |
23776098 |
T |
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| Q |
219 |
tcttcatattgttgcatgac |
238 |
Q |
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| T |
23776099 |
tcttcatattgttgcatgac |
23776118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 52 - 239
Target Start/End: Complemental strand, 22038782 - 22038597
Alignment:
| Q |
52 |
aaatataagattcatagtgaatggatgaagttgtgacttattagcccatgttattaaggttagagcactaatacaccagcccttctctcttcttcttaga |
151 |
Q |
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|||||||| ||| ||||||||||||||||| | | |||||| |||||| ||||||||||||||||||||||||||||| | ||||| ||||| | | |
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| T |
22038782 |
aaatataaaattgatagtgaatggatgaagctattacttatcagcccacgttattaaggttagagcactaatacaccatcacttct---atcttcaaaca |
22038686 |
T |
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| Q |
152 |
ttatcatagataatttgggtacatatttgcttctataatgtaattgattttgcttgattggaaggagtcttcata-ttgttgcatgacc |
239 |
Q |
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| T |
22038685 |
ttatcatagataatttgggtacgtatttacttctgtgatgtaattaattttgattaattggaaggagtcttcttatttgttgcatgacc |
22038597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 52 - 239
Target Start/End: Complemental strand, 22048116 - 22047931
Alignment:
| Q |
52 |
aaatataagattcatagtgaatggatgaagttgtgacttattagcccatgttattaaggttagagcactaatacaccagcccttctctcttcttcttaga |
151 |
Q |
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|||||||| ||| ||||||||| |||||| | | |||||| |||||||| ||||||||||||||||||||||||||| | ||||| ||||| | | |
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| T |
22048116 |
aaatataacattgatagtgaataaatgaagctattacttatcagcccatgatattaaggttagagcactaatacaccatcacttctatcttcaa---aca |
22048020 |
T |
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| Q |
152 |
ttatcatagataatttgggtacatatttgcttctataatgtaattgattttgcttgattggaaggagtcttc-atattgttgcatgacc |
239 |
Q |
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|||||||||||||||||||||| ||||| ||||| | |||||||| |||||| || |||||||||||||||| | ||||||||||||| |
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| T |
22048019 |
ttatcatagataatttgggtacgtatttacttctgtgatgtaattaattttgattaattggaaggagtcttctagtttgttgcatgacc |
22047931 |
T |
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