View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21548_low_2 (Length: 413)

Name: NF21548_low_2
Description: NF21548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21548_low_2
NF21548_low_2
[»] chr2 (1 HSPs)
chr2 (23-389)||(605580-605934)


Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 23 - 389
Target Start/End: Original strand, 605580 - 605934
Alignment:
Q  23 aatatctcaatgaccgattcttccatattcaacaaccgcaaaatctcttatcccttccactgctgttgttcataatcttcataagcacaacccaatttca 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  605580 aatatctcaatgaccgattcttccatattcaacaaccgcaaaatctcttatcccttccactgttgttgttcataatcttcataagcacaacccaatttca 605679  T
Q  123 tcgcagcattgtttcttcaatttctcatcgtgtttctgtttgtgtttgtgtttgatggatctatcacaccatcaatccaatttatctctcaatttctcat 222  Q
    || ||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  605680 tcccagcattgtttcttcaatttctcatcgtgt------------ttgtgtttgatggatctatcacaccatcaatccaatttatctctcaatttctcat 605767  T
Q  223 cttctcacgcttctcctcctcgccgtccaccgattcccgacgactccatcgccctccacctcgaatccagcttccgcgatccatcaaaccctgtccccac 322  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  605768 cttctcacgcttctcctcctccccgtccaccgattcccgacgactccatcgccctccacctcgaatccagcttccgcgatccatcaaaccctgtccccac 605867  T
Q  323 cgttcctcttcagctcatggaaccacaaacagagaaagaaaatggtaacgctatcgatatcgaatcg 389  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  605868 cgttcctcttcagctcatggaaccacaaacagagaaagaaaacggtaacgctatcgatatcgaatcg 605934  T

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