View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21548_low_4 (Length: 367)
Name: NF21548_low_4
Description: NF21548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21548_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 15 - 357
Target Start/End: Complemental strand, 43469076 - 43468721
Alignment:
| Q |
15 |
tcaaatttgacgtatgattatcttgattttggagtaattgaggttccaggcaactaatttgatcgatttattatgttttttgagacaatgatttcttaag |
114 |
Q |
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| T |
43469076 |
tcaaatttgacgtatgattattttgattttggaataattgaggttccaggcaactaatttgatcgatttattatgttttttgagacaatgatttcttaag |
43468977 |
T |
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| Q |
115 |
ttttttaaaaccatcataagttctgtttaag----------------aatggtggttatcgaaatgagtcaatcttacaagactaaacattattttaaat |
198 |
Q |
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| T |
43468976 |
ttttttaaaaccatcataagttctgtttatattcatttatataattcaatggtggttatcgaaatgagtcaatcttacaagactaaacattattttaaat |
43468877 |
T |
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| Q |
199 |
gggtcttgattttttaatagtataacacttgataatgtttatttgcttgatacggatcctttttcttttatcctatcttataaaacttttttgatggctt |
298 |
Q |
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| T |
43468876 |
gggtcttgattttttaattgtataacacttgataatgtttatttgcttgatacggaccctttttcttttatcctatcttataaaacttttttgacggctt |
43468777 |
T |
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| Q |
299 |
aatttaccaccataaggcttactttactataagattttaaaataactaagagccctatg |
357 |
Q |
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| T |
43468776 |
aattt---accataaggcttactttactataagattttaaaataactaagagccctatg |
43468721 |
T |
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