View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21548_low_6 (Length: 307)
Name: NF21548_low_6
Description: NF21548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21548_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 70 - 290
Target Start/End: Original strand, 561247 - 561470
Alignment:
| Q |
70 |
aatgttaaatattttctattaagatacatgtaaaagtcacttaaactttaaattttaatgtaaaatcacattgtaaatgaaaagaaatcttagcatcaaa |
169 |
Q |
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| T |
561247 |
aatgttaaatattttctattaagatacatgtaaaagtcacttaaactttaaatttcaatgtaaaatcacattgtaaataaaaagaaatcttagcatcaaa |
561346 |
T |
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| Q |
170 |
ttagaattaattccaagacaaaatcaattctattt---gacatgcagatatgtcaaaatctaatgtataattcttgaatcaattttgccctatccccaac |
266 |
Q |
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| T |
561347 |
ttagaattaattccaagacaaaatcaattctatttgaggacatgcagatatgtcaaaatctaatgtataattcttgaatcaattttgccctatccccaac |
561446 |
T |
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| Q |
267 |
catactttaaataatgttataatt |
290 |
Q |
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| T |
561447 |
catactttaaataatgttataatt |
561470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 561240 - 561206
Alignment:
| Q |
1 |
acttttgactaaaattaattttacaagtcaccgta |
35 |
Q |
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| T |
561240 |
acttttgactaaaattaattttacaagtcaccgta |
561206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 69
Target Start/End: Complemental strand, 561122 - 561092
Alignment:
| Q |
39 |
tttctcaaatttgttaattcttgttaagttg |
69 |
Q |
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| T |
561122 |
tttctcaaatttgttaattcttgttaagttg |
561092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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