View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21548_low_7 (Length: 252)
Name: NF21548_low_7
Description: NF21548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21548_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 16790377 - 16790148
Alignment:
| Q |
6 |
agagatgaagagatataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaata |
105 |
Q |
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| T |
16790377 |
agagatgaagagatataacttgcaggaataagcaaccgcaacggtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaata |
16790278 |
T |
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| Q |
106 |
atcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtaca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
16790277 |
ttcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaaggttctgatcgatagtcactgcattgtaca |
16790178 |
T |
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| Q |
206 |
tgattttaacaagcgacccttcactatgtt |
235 |
Q |
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| T |
16790177 |
tgattttaacaattgatccttcactatgtt |
16790148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 16791782 - 16791554
Alignment:
| Q |
6 |
agagatgaagagatataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaata |
105 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||||||| |
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| T |
16791782 |
agagaagaagagatataacttgcaggaataagcaacctcaacggtttgatcaatgactacagaatcaatata-ataatcaatgagatgaaaatcaaaata |
16791684 |
T |
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| Q |
106 |
atcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtaca |
205 |
Q |
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| T |
16791683 |
atcaatgcaaatagttgaaaatagaatataaaatcacttacctttttatcataagtgaagtgagatacatggttctgattgatagtcactgcattgtaca |
16791584 |
T |
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| Q |
206 |
tgattttaacaagcgacccttcactatgtt |
235 |
Q |
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| T |
16791583 |
tgattttaatacgtgacccttcactttgtt |
16791554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 20 - 235
Target Start/End: Original strand, 16616712 - 16616927
Alignment:
| Q |
20 |
ataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaatgcaaatag |
119 |
Q |
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||||||| ||||||||| |||||||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
16616712 |
ataactttcaggaataaacaaccgcagtggtttgatcaatgactacaaaaccaatatacatagtcgatgagatgaaaatcaaaatggtcaatgcaaataa |
16616811 |
T |
|
| Q |
120 |
ttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaacaagc |
219 |
Q |
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|| |||| ||||||||||| ||||||||||||||||| |||| |||||||||||||| || |||||||||| ||||||||||||||| ||||| ||||| |
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| T |
16616812 |
ttcaaaacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggttttgattgatagacactgcattgtacataattttcacaagt |
16616911 |
T |
|
| Q |
220 |
gacccttcactatgtt |
235 |
Q |
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| |||||||| |||| |
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| T |
16616912 |
aatccttcactttgtt |
16616927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 16628412 - 16628610
Alignment:
| Q |
20 |
ataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaatgcaaatag |
119 |
Q |
| |
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|||||||||||||||||| ||||||| | | |||||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||| ||||||| |
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| T |
16628412 |
ataacttgcaggaataagtaaccgcagcggattgatcaatgactgcagatgtaatattcatagtcaatgagataaaaatcaaaatgatcaacgcaaataa |
16628511 |
T |
|
| Q |
120 |
ttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaacaag |
218 |
Q |
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|| ||| ||||||||||| |||||||||||||||| ||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |
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| T |
16628512 |
ttccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttgattgatggtcactgcattgtacatgattttaacaag |
16628610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 16637293 - 16637491
Alignment:
| Q |
20 |
ataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaatgcaaatag |
119 |
Q |
| |
|
|||||||||||||||||| ||||||| | | |||||||||||||||||| ||||| ||||||||||||||| ||||||||||| ||||| ||||||| |
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| T |
16637293 |
ataacttgcaggaataagtaaccgcagcggattgatcaatgactgcagatgtaatattcatagtcaatgagataaaaatcaaaatgatcaacgcaaataa |
16637392 |
T |
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| Q |
120 |
ttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaacaag |
218 |
Q |
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|| ||| ||||||||||| |||||||||||||||| ||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||| |
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| T |
16637393 |
ttccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatacaaggttttgattgatggtcactgcattgtacatgattttaacaag |
16637491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 16792352 - 16792549
Alignment:
| Q |
20 |
ataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaatgcaaatag |
119 |
Q |
| |
|
||||||| || |||| ||||||||| | ||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
16792352 |
ataacttacaagaatgagcaaccgccatggtttgatcaatga-tgcaaaacttatatacatagtcaatgaaatgaaaatcaaaataatcaatgtgaataa |
16792450 |
T |
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| Q |
120 |
ttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaacaag |
218 |
Q |
| |
|
||||||| | ||||||||| ||||||| ||||||||| || |||||||||||||| | | ||||||||||||| |||| ||||||||||||||||||| |
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| T |
16792451 |
ttgaaaacataatataaaatcatttacatttttatcagaaatgaagtgagatacatggctttgattgatagtcattgcaatgtacatgattttaacaag |
16792549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 16790439 - 16790637
Alignment:
| Q |
20 |
ataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaatgcaaatag |
119 |
Q |
| |
|
||||||| || |||||||||||| ||| |||||||||||| |||| ||| || |||||||||||||| || ||||||||||||||||||| ||||| |
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| T |
16790439 |
ataacttacaagaataagcaaccacaatgatttgatcaatga-tgcaaaacttatttacatagtcaatgaaatcaaaatcaaaataatcaatgtgaatag |
16790537 |
T |
|
| Q |
120 |
ttgaaaatagaatataaaaccatttaccttttt-atcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaacaag |
218 |
Q |
| |
|
|| |||| | ||||||||| ||||||| ||||| |||| ||||||| ||||||||| | | ||||||||||||| |||||||||||||||||||||||| |
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| T |
16790538 |
ttcaaaagataatataaaatcatttacattttttatcagaagtgaaatgagatacatggctttgattgatagtcattgcattgtacatgattttaacaag |
16790637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 20 - 214
Target Start/End: Original strand, 38877242 - 38877436
Alignment:
| Q |
20 |
ataacttgcaggaataagcaaccgcaacagtttgatcaatgactgcagaaccaatatacatagtcaatgagatgaaaatcaaaataatcaatgcaaatag |
119 |
Q |
| |
|
|||||||| |||||||||||||| |||| |||||||||||||||| ||||| ||||||||||| | ||||||| |||||||||||||| |||| ||||| |
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| T |
38877242 |
ataacttggaggaataagcaaccacaacggtttgatcaatgactgaagaacaaatatacatagcctatgagataaaaatcaaaataattaatgtgaatag |
38877341 |
T |
|
| Q |
120 |
ttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaagattctgattgatagtcactgcattgtacatgattttaa |
214 |
Q |
| |
|
|| |||| |||||||||||||||| |||||||||||||| || |||||||||||||| | |||||| |||||||||||||||||||||||||||| |
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|
| T |
38877342 |
ttcaaaacagaatataaaaccattcacctttttatcatatgtcaagtgagatacaaggtcctgattcatagtcactgcattgtacatgattttaa |
38877436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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