View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21549_high_6 (Length: 315)
Name: NF21549_high_6
Description: NF21549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21549_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 303
Target Start/End: Original strand, 54032393 - 54032677
Alignment:
| Q |
19 |
ccttaaccatggcatttctcaaaggaaataagctgttacatatggagtactttcttcctgattccaaacatctcactgcaagtggagatgatacttggat |
118 |
Q |
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| T |
54032393 |
ccttaaccatggcatttctcaaaggaaataagctgttacatatggagttctttcttcctgattccaaacatctcactgcaagtggagatgatacttggat |
54032492 |
T |
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| Q |
119 |
tctgggttgtctattgctcttagcaagtagtgttttttggtcatgttggatgatcatgcaggtaaaaaattaataaaaccagaattaataatcttttagg |
218 |
Q |
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| T |
54032493 |
tctgggttgtctattgctcttagcaagtagtgttttttggtcatgttggatgatcatgcaggtaaaaaattaataaaaccagaattaataatcttttagg |
54032592 |
T |
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| Q |
219 |
tgacaagattattattcatcaatggacatttgattaaaatttcaacacaggtgccgatttcttcatcttgcccggatcatatatt |
303 |
Q |
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| T |
54032593 |
tgacaagattattattcatcaatggacatttgattaaaatttcaacacaggtgccgatttcttcatcttgcccggatcatatatt |
54032677 |
T |
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