View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21549_low_1 (Length: 749)

Name: NF21549_low_1
Description: NF21549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21549_low_1
NF21549_low_1
[»] chr2 (8 HSPs)
chr2 (189-684)||(12324589-12325084)
chr2 (334-669)||(33789780-33790095)
chr2 (1-143)||(12324454-12324600)
chr2 (18-127)||(38554255-38554364)
chr2 (335-393)||(39814374-39814432)
chr2 (486-591)||(18955399-18955505)
chr2 (61-107)||(31380585-31380631)
chr2 (1-66)||(8485881-8485946)
[»] chr1 (18 HSPs)
chr1 (335-670)||(8788532-8788864)
chr1 (344-695)||(10582611-10582939)
chr1 (344-669)||(8089719-8090021)
chr1 (451-695)||(49122130-49122367)
chr1 (344-671)||(10583817-10584121)
chr1 (332-622)||(49121838-49122108)
chr1 (344-670)||(49123173-49123476)
chr1 (167-322)||(12900881-12901036)
chr1 (130-304)||(4520674-4520844)
chr1 (123-299)||(46502748-46502922)
chr1 (460-621)||(23541015-23541176)
chr1 (548-669)||(3815217-3815336)
chr1 (336-393)||(5721695-5721752)
chr1 (548-613)||(36346593-36346658)
chr1 (344-417)||(5177304-5177379)
chr1 (339-417)||(11359599-11359673)
chr1 (548-613)||(19950390-19950455)
chr1 (114-146)||(49138199-49138231)
[»] scaffold0026 (2 HSPs)
scaffold0026 (336-669)||(80600-80930)
scaffold0026 (336-662)||(79404-79727)
[»] chr3 (14 HSPs)
chr3 (336-662)||(592384-592707)
chr3 (336-669)||(48637538-48637868)
chr3 (330-669)||(40976659-40977002)
chr3 (344-669)||(7197623-7197929)
chr3 (335-669)||(54994511-54994822)
chr3 (489-669)||(45826152-45826329)
chr3 (363-669)||(2386292-2386583)
chr3 (336-432)||(45826357-45826453)
chr3 (503-622)||(51274436-51274555)
chr3 (336-417)||(35389152-35389229)
chr3 (335-393)||(25184579-25184637)
chr3 (547-606)||(8638949-8639008)
chr3 (570-613)||(42510646-42510688)
chr3 (554-613)||(49987229-49987286)
[»] chr5 (16 HSPs)
chr5 (344-671)||(41050923-41051245)
chr5 (450-694)||(39702793-39703034)
chr5 (450-669)||(39701588-39701804)
chr5 (344-669)||(22950174-22950476)
chr5 (344-669)||(29526038-29526346)
chr5 (450-695)||(29527225-29527464)
chr5 (452-670)||(19934559-19934770)
chr5 (556-669)||(19139374-19139484)
chr5 (548-608)||(35144558-35144618)
chr5 (339-417)||(41108823-41108897)
chr5 (339-417)||(18690882-18690956)
chr5 (364-433)||(19934487-19934556)
chr5 (4-99)||(15027009-15027103)
chr5 (344-415)||(29527481-29527552)
chr5 (336-393)||(33215362-33215419)
chr5 (4-70)||(34272271-34272337)
[»] chr8 (7 HSPs)
chr8 (344-670)||(40254297-40254617)
chr8 (346-669)||(2411061-2411378)
chr8 (554-662)||(21661182-21661287)
chr8 (547-613)||(5176600-5176665)
chr8 (335-393)||(36241366-36241424)
chr8 (188-297)||(37263988-37264096)
chr8 (591-669)||(26246968-26247043)
[»] chr4 (8 HSPs)
chr4 (335-581)||(45638746-45638997)
chr4 (158-319)||(49272656-49272817)
chr4 (344-670)||(11961941-11962244)
chr4 (113-335)||(52723825-52724053)
chr4 (540-669)||(3567053-3567179)
chr4 (546-615)||(27869367-27869436)
chr4 (554-613)||(32992387-32992445)
chr4 (580-613)||(54291698-54291731)
[»] scaffold0227 (2 HSPs)
scaffold0227 (335-694)||(10971-11314)
scaffold0227 (344-669)||(12136-12437)
[»] chr7 (8 HSPs)
chr7 (344-695)||(6081112-6081440)
chr7 (344-669)||(6082319-6082621)
chr7 (114-299)||(39773311-39773496)
chr7 (548-669)||(17901154-17901274)
chr7 (140-205)||(29346786-29346851)
chr7 (344-417)||(27021157-27021233)
chr7 (337-393)||(17166131-17166187)
chr7 (167-205)||(42863781-42863819)
[»] chr6 (10 HSPs)
chr6 (344-691)||(18132967-18133290)
chr6 (334-669)||(21535609-21535921)
chr6 (344-669)||(18131782-18132084)
chr6 (489-669)||(21395591-21395768)
chr6 (560-667)||(7033339-7033443)
chr6 (548-669)||(4303035-4303153)
chr6 (451-537)||(7033443-7033525)
chr6 (559-669)||(16189671-16189780)
chr6 (377-439)||(7033521-7033583)
chr6 (184-256)||(6033315-6033388)
[»] scaffold0011 (2 HSPs)
scaffold0011 (334-669)||(205589-205901)
scaffold0011 (489-669)||(211666-211843)
[»] scaffold0018 (2 HSPs)
scaffold0018 (344-622)||(177907-178165)
scaffold0018 (344-403)||(177784-177843)
[»] scaffold0274 (1 HSPs)
scaffold0274 (113-299)||(5230-5416)
[»] scaffold0271 (1 HSPs)
scaffold0271 (113-299)||(3874-4060)


Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 189 - 684
Target Start/End: Original strand, 12324589 - 12325084
Alignment:
Q  189 aagtcttcttctatcttcctactggtttcttaagtttacaatttacattgtattcaatcaatttctcttgtattgtgtttttcattaaattcaatacaaa 288  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  12324589 aagtcttcttctatattcctactagtttcttaagtttacaatttacattgtattcagtcaatttatcttgtattgtgtttttcattaaattcaatacaaa 12324688  T
Q  289 gttatttcatctatttcactgcattcatcaattataaagggctaaactgttagatataggactcctaagggaagaagttatataatactagttgtttatt 388  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12324689 gttatttcatctatttcactgcattcatcaattacaaagggctaaactgttggatataggactcctaagggcagaagttatataatactagttgtttatt 12324788  T
Q  389 taatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcagtagtgtctgtctactaaacttctatgtaactactatatgagagag 488  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| | ||||||||||||| |||||||    
T  12324789 taatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcagtagtggttgtctactaaacttatgtgtaactactataggagagag 12324888  T
Q  489 ttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggag 588  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||    
T  12324889 ttagtattataaataagatgcaaaggaaaagaaagctattcagggattgcgataaaggattggtagggagagaccaaactctcgaatttttggaggggag 12324988  T
Q  589 agaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatcaaccggtatcagagca 684  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12324989 agaaccaagactctcgaattccttgggattatatattgtaataattactataaatttatattttgatatcagtttctatcaaccggtatcagagca 12325084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 334 - 669
Target Start/End: Original strand, 33789780 - 33790095
Alignment:
Q  334 actgttagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 433  Q
    ||||||||  |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  33789780 actgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 33789879  T
Q  434 ttgtctgcagtagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcaggg 533  Q
                    ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| || |||||||||||||||||||    
T  33789880 ----------------ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcaggg 33789959  T
Q  534 attgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataat 633  Q
    |||| |||||| ||| |||||||||||||||| || || |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  33789960 attgggataaaggataggtagggagagaccaagctctcaaattcttggaggggagagaaccaagactctcgaatttcttgggattatatattgtaataat 33790059  T
Q  634 tactataaatttatattttgatgtcagtttctatca 669  Q
    |||||||||||||||||||||| |||||||||||||    
T  33790060 tactataaatttatattttgatatcagtttctatca 33790095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 12324454 - 12324600
Alignment:
Q  1 aggaaatacatttgacgtaacataattagttgaggtaaatggacacctgacgtgtgatcttaaaatcaagtaaccttgagttgtgcataaacagtgaaat 100  Q
    |||||||||||||||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12324454 aggaaatacatttgacctaacataattagttgaggtaaatggagacgtggcgtgtgatcttaaaatcaagtaaccttgagttgtgcataaacggtgaaat 12324553  T
Q  101 gaggatc----gtggacatgaagaaaattgaagaaaagtctccttct 143  Q
    |||||||    |||||||||||||||||||||||||||||| |||||    
T  12324554 gaggatcaatagtggacatgaagaaaattgaagaaaagtcttcttct 12324600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 127
Target Start/End: Original strand, 38554255 - 38554364
Alignment:
Q  18 taacataattagttgaggtaaatggacacctgacgtgtgatcttaaaatcaagtaaccttgagttgtgcataaacagtgaaatgaggatc----gtggac 113  Q
    ||||||||||||| | ||||||||||||  || ||||||||| | |||| ||| ||||||||||||||||||   |||||||||||||||    ||||||    
T  38554255 taacataattagtaggggtaaatggacaagtggcgtgtgatcct-aaattaaggaaccttgagttgtgcata---agtgaaatgaggatcaatagtggac 38554350  T
Q  114 atgaagaaaattga 127  Q
    ||||||||||||||    
T  38554351 atgaagaaaattga 38554364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 335 - 393
Target Start/End: Original strand, 39814374 - 39814432
Alignment:
Q  335 ctgttagatataggactcctaagggaagaagttatataatactagttgtttatttaata 393  Q
    ||||||||||||||||||||||||| | |||||||| |||| |||||||||||||||||    
T  39814374 ctgttagatataggactcctaagggcataagttataaaatattagttgtttatttaata 39814432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 486 - 591
Target Start/End: Original strand, 18955399 - 18955505
Alignment:
Q  486 gagttagtattataaataa-gatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttcgaattcttggagg 584  Q
    |||||||| |||||||||| |||||| || |||||||  | |||| |  |||  |||||| |||||||||||||||||||| || || |||||||||| |    
T  18955399 gagttagtgttataaataaagatgcagaggaaaagaagagaattcggttatttggataaaggattggtagggagagaccaatctctctaattcttggaag 18955498  T
Q  585 ggagaga 591  Q
    |||||||    
T  18955499 ggagaga 18955505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 31380585 - 31380631
Alignment:
Q  61 taaaatcaagtaaccttgagttgtgcataaacagtgaaatgaggatc 107  Q
    |||||||||  |||||||||||||||||||| |||||||||||||||    
T  31380585 taaaatcaatgaaccttgagttgtgcataaatagtgaaatgaggatc 31380631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 8485946 - 8485881
Alignment:
Q  1 aggaaatacatttgacgtaacataattagttgaggtaaatggacacctgacgtgtgatcttaaaat 66  Q
    |||| ||||||||| | ||||||||||  ||||||||||||||||| ||||  ||| |||||||||    
T  8485946 aggatatacatttggcataacataattgattgaggtaaatggacacatgactagtggtcttaaaat 8485881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 335 - 670
Target Start/End: Complemental strand, 8788864 - 8788532
Alignment:
Q  335 ctgttagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgt 434  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  8788864 ctgttagatataggactcctaagggaagaagttatagaatactagttgtttatttaatagtattataaattagtaactgttacttatgtgcagtaattgc 8788765  T
Q  435 tgtctgcagtagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcaggga 534  Q
    ||||||||||||||| |||||||||||||  ||||||||| ||||| ||| ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  8788764 tgtctgcagtagtgtttgtctactaaactaatatgtaactgctataggagtgagttagtattataaataagatgcagaggaaaagaaaggtattcaggga 8788665  T
Q  535 ttgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataatt 634  Q
    ||| |||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||| |||  ||||||||||| |||    
T  8788664 ttgggataaaggataggtagggagagaccaagctttcgaattcttggaggggagagaaccaagactctctaatttcttgggat--tatattgtaat-att 8788568  T
Q  635 actataaatttatattttgatgtcagtttctatcaa 670  Q
    ||||| | ||||||||||||| |||||| |||||||    
T  8788567 actattagtttatattttgatatcagttcctatcaa 8788532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 344 - 695
Target Start/End: Original strand, 10582611 - 10582939
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 443  Q
    |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||              
T  10582611 ataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg---------- 10582700  T
Q  444 tagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataa 543  Q
          ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| |  ||||||||||||||||||||||| |||||    
T  10582701 ------ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaagaaaagaaaggtattcagggattgggataa 10582790  T
Q  544 atgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaat 643  Q
    | |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  | |||||||||  ||||||| | |    
T  10582791 aggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tgtattgtaat-cttactattagt 10582887  T
Q  644 ttatattttgatgtcagtttctatcaaccggtatcagagcaattctgatcca 695  Q
    |||||||||||| |||||| |||||||| |||||||||||| ||||||||||    
T  10582888 ttatattttgatatcagttcctatcaactggtatcagagcagttctgatcca 10582939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 344 - 669
Target Start/End: Complemental strand, 8090021 - 8089719
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 443  Q
    |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||              
T  8090021 ataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg---------- 8089932  T
Q  444 tagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataa 543  Q
          ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| |  ||||||||||||||||||||||| |||||    
T  8089931 ------ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaagaaaagaaaggtattcagggattgggataa 8089842  T
Q  544 atgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaat 643  Q
    | |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |    
T  8089841 aggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagt 8089745  T
Q  644 ttatattttgatgtcagtttctatca 669  Q
    |||||||||||| |||||| ||||||    
T  8089744 ttatattttgatatcagttcctatca 8089719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 451 - 695
Target Start/End: Original strand, 49122130 - 49122367
Alignment:
Q  451 tgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattg 550  Q
    ||||| |||||||||||||||||  ||||| ||     |||||||||||||||||||||| || ||||||||||||||||||||||| |||||| |||||    
T  49122130 tgtctgctaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggattg 49122225  T
Q  551 gtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatatt 650  Q
    ||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | ||||||||    
T  49122226 gtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatatt 49122322  T
Q  651 ttgatgtcagtttctatcaaccggtatcagagcaattctgatcca 695  Q
    || || |||||| |||||||| |||||||||||| ||||||||||    
T  49122323 ttcatatcagttcctatcaactggtatcagagcagttctgatcca 49122367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 344 - 671
Target Start/End: Original strand, 10583817 - 10584121
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 443  Q
    |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||              
T  10583817 ataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg---------- 10583906  T
Q  444 tagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataa 543  Q
          ||||||||||||||||||||||||  ||||    | || |||||||||||||||||||||| |  ||||||||||||||||||||||| |||||    
T  10583907 ------ctgtctactaaacttctatgtaacagctat----gggacttagtattataaataagatgcagaagaaaagaaaggtattcagggattgggataa 10583996  T
Q  544 atgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaat 643  Q
    | |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  | |||||||||  ||||||| | |    
T  10583997 aggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tgtattgtaat-cttactattagt 10584093  T
Q  644 ttatattttgatgtcagtttctatcaac 671  Q
    |||||||||||| |||||| ||||||||    
T  10584094 ttatattttgatatcagttcctatcaac 10584121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 332 - 622
Target Start/End: Original strand, 49121838 - 49122108
Alignment:
Q  332 aaactgttagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaat 431  Q
    ||||||||||  |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||    
T  49121838 aaactgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgaagtaat 49121937  T
Q  432 tgttgtctgcagtagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcag 531  Q
    ||||||||                ||||||||||||||||||  ||||| ||     |||||||||||||||||||||| || |||||||||||||||||    
T  49121938 tgttgtct----------------actaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcag 49122017  T
Q  532 ggattgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatat 622  Q
    |||||| |||||| |||||||||||||||| ||| || |||||| ||||||||||||||||||||||||||| |||| |||| ||||||||    
T  49122018 ggattgggataaaggattggtagggagagatcaagctctcgaatacttggaggggagagaaccaagactctcaaatttcttgggattatat 49122108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 344 - 670
Target Start/End: Original strand, 49123173 - 49123476
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 443  Q
    |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||              
T  49123173 ataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg---------- 49123262  T
Q  444 tagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataa 543  Q
          ||||||||||||||||||||||||  |||||     || |||||||||||||||||||||| |  ||||||||||||||||||||||| | |||    
T  49123263 ------ctgtctactaaacttctatgtaacagctata----ggacttagtattataaataagatgcagaagaaaagaaaggtattcagggattggggtaa 49123352  T
Q  544 atgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaat 643  Q
    | ||||||||||||||||     |  |||||| |||||||||||||||||||||||||||||||| |||| |||  |||||| ||||  ||||||| | |    
T  49123353 aggattggtagggagagattgggcactcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tatattctaat-cttactattagt 49123449  T
Q  644 ttatattttgatgtcagtttctatcaa 670  Q
    |||||||||||| |||||| |||||||    
T  49123450 ttatattttgatatcagttcctatcaa 49123476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 167 - 322
Target Start/End: Original strand, 12900881 - 12901036
Alignment:
Q  167 taatgacttaagtctttggactaagtcttcttctatcttcctactggtttcttaagtttacaatttacattgtattcaatcaatttctcttgtattgtgt 266  Q
    ||||| |||| ||||||| |||||||||||||||||||| ||||| |||  |||||||  |||||||||||  ||||||||| |||||||||||||||||    
T  12900881 taatggcttaggtctttgaactaagtcttcttctatctttctactagttgattaagttgtcaatttacattccattcaatcactttctcttgtattgtgt 12900980  T
Q  267 ttttcattaaattcaatacaaagttatttcatctatttcactgcattcatcaatta 322  Q
    |||||||| ||||||||||||||| ||||||||||||||| | |||||||||||||    
T  12900981 ttttcattgaattcaatacaaagtcatttcatctatttcatttcattcatcaatta 12901036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 130 - 304
Target Start/End: Original strand, 4520674 - 4520844
Alignment:
Q  130 aaaagtctccttctccccttgatattctctttaagattaatgacttaagtctttggactaagtcttcttctatcttcctactggtttcttaagtttacaa 229  Q
    |||||||||||||| || ||| || |||| || ||| |||||||||||||||||| ||||||||||||| | |||| ||||| | |||| |||||   ||    
T  4520674 aaaagtctccttcttcctttggtactctccttgagaataatgacttaagtctttgaactaagtcttcttttgtctttctactag-ttctaaagttgttaa 4520772  T
Q  230 tttacattgtattcaatcaatttctcttgtattgtgtttttcattaaattcaatacaaagttatttcatctattt 304  Q
    ||||||||||||| |||||||||| | |||||||||||||||| | ||||  ||||| |||||||||||||||||    
T  4520773 tttacattgtatttaatcaatttc-cctgtattgtgtttttcagtgaatt--atacatagttatttcatctattt 4520844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 123 - 299
Target Start/End: Original strand, 46502748 - 46502922
Alignment:
Q  123 attgaagaaaagtctccttctccccttgatattctctttaagattaatgacttaagtctttggactaagtcttcttctatcttcctactggtttcttaag 222  Q
    |||||||||||||||||| ||    ||| || |||| || ||| ||||| |||| |||||| |||||||||||||||||| || |||||  ||  |||||    
T  46502748 attgaagaaaagtctcctccttt--ttggtactctccttgagagtaatggcttaggtctttagactaagtcttcttctatttttctactaattcattaag 46502845  T
Q  223 tttacaatttacattgtattcaatcaatttctcttgtattgtgtttttcattaaattcaatacaaagttatttcatc 299  Q
    ||  ||||||||||| ||||| |||||||||||||||||||||||||| | | ||||||||||| || |||||||||    
T  46502846 ttgtcaatttacattttattcgatcaatttctcttgtattgtgttttttagtgaattcaatacagagctatttcatc 46502922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 460 - 621
Target Start/End: Complemental strand, 23541176 - 23541015
Alignment:
Q  460 aacttctatgtaactactatatgagagagttagtattataaataa-gatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggag 558  Q
    ||||||||||||||| ||||| |   ||||||||||||| ||||| ||||||||| ||||||| |  |||||||||||| |||||  |||||||||||||    
T  23541176 aacttctatgtaactgctatagg---gagttagtattatgaataaagatgcaaaggaaaagaaggacattcagggattgggataatggattggtagggag 23541080  T
Q  559 agaccaaactttcg--aattcttggaggggagagaaccaagactctcgaattccttgagattata 621  Q
    ||||||| || | |  ||| |||||| || ||| |||||||||||| ||||| |||| |||||||    
T  23541079 agaccaagctcttgaaaatacttggaaggaagaaaaccaagactcttgaatttcttgggattata 23541015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 548 - 669
Target Start/End: Original strand, 3815217 - 3815336
Alignment:
Q  548 ttggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttat 647  Q
    |||| ||||||||||||| |  ||||||||||||||||||||||||||||||||||||||| | || ||  || |||||| || |||| ||| ||||| |    
T  3815217 ttggaagggagagaccaagcactcgaattcttggaggggagagaaccaagactctcgaatttcatggga-aatctattgt-attattaatattaatttgt 3815314  T
Q  648 attttgatgtcagtttctatca 669  Q
    |||||||| |||||||||||||    
T  3815315 attttgatatcagtttctatca 3815336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 336 - 393
Target Start/End: Original strand, 5721695 - 5721752
Alignment:
Q  336 tgttagatataggactcctaagggaagaagttatataatactagttgtttatttaata 393  Q
    |||||||||||||||||||||||| | |||||||| |||| |||||||||||||||||    
T  5721695 tgttagatataggactcctaagggcataagttataaaatattagttgtttatttaata 5721752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 548 - 613
Target Start/End: Complemental strand, 36346658 - 36346593
Alignment:
Q  548 ttggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttg 613  Q
    |||| ||||||||| ||| || |||||||| |||||||||||||||||||||||||||||| ||||    
T  36346658 ttggaagggagagatcaagctctcgaattcatggaggggagagaaccaagactctcgaatttcttg 36346593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 344 - 417
Target Start/End: Original strand, 5177304 - 5177379
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactag---ttgtttatttaatagtattataaattagtaattgttac 417  Q
    |||||||||||||||||||||| ||||||||| |||   ||| |||||||||| |||||||||||||||| ||||||    
T  5177304 ataggactcctaagggaagaagctatataatattagtaattgattatttaata-tattataaattagtaactgttac 5177379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 11359673 - 11359599
Alignment:
Q  339 tagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttac 417  Q
    ||||||||||||||||||| | | |||||||| |||| |||||||||||||||||    ||| ||||||||||||||||    
T  11359673 tagatataggactcctaagagcataagttatagaatattagttgtttatttaata----tattaattagtaattgttac 11359599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 548 - 613
Target Start/End: Complemental strand, 19950455 - 19950390
Alignment:
Q  548 ttggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttg 613  Q
    |||| ||||| | ||||| || |||||||||||||||||||||||||||| ||||| |||| ||||    
T  19950455 ttgggagggaaaaaccaagctctcgaattcttggaggggagagaaccaaggctctcaaatttcttg 19950390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 114 - 146
Target Start/End: Original strand, 49138199 - 49138231
Alignment:
Q  114 atgaagaaaattgaagaaaagtctccttctccc 146  Q
    |||||||||||||||||||||||||||||||||    
T  49138199 atgaagaaaattgaagaaaagtctccttctccc 49138231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 336 - 669
Target Start/End: Original strand, 80600 - 80930
Alignment:
Q  336 tgttagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgtt 435  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  80600 tgttagatataggactcctaagggcagaagttatagaatactagttgtttatttaatagtattataaattagtaactgttacttatgtgcagtaattgtt 80699  T
Q  436 gtctgcagtagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggat 535  Q
    ||||||||||||| ||||||||||||||  ||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  80700 gtctgcagtagtgcctgtctactaaactaatatgtaactgctataggagtgagttagtattataaataagatgcagagaaaaagaaaggtattcagggat 80799  T
Q  536 tgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataatta 635  Q
    || |||||| ||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||  ||| |||  ||||||||||| ||||    
T  80800 tgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttattgggat--tatattgtaat-atta 80896  T
Q  636 ctataaatttatattttgatgtcagtttctatca 669  Q
    |||| | ||||||||||||| |||||| ||||||    
T  80897 ctattagtttatattttgatatcagttcctatca 80930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 336 - 662
Target Start/End: Original strand, 79404 - 79727
Alignment:
Q  336 tgttagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgtt 435  Q
    |||||||||||||||||||||||| |||||||||| |||||||||  |||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  79404 tgttagatataggactcctaagggcagaagttatagaatactagtattttatttaatagtattataaattagtaactgttacttatgtgcagtaattgct 79503  T
Q  436 gtctgcagtagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggat 535  Q
    ||||||||||||| ||||||||||||||  ||||||||| || || ||| ||||||||||||||||||||||||| || |||| ||||||||||| ||||    
T  79504 gtctgcagtagtgcctgtctactaaactaatatgtaactgctgtaggagtgagttagtattataaataagatgcagaggaaaataaaggtattcatggat 79603  T
Q  536 tgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataatta 635  Q
    |  |||||| ||| |||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||  ||||||||||| ||||    
T  79604 taggataaaggataggtacggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-atta 79700  T
Q  636 ctataaatttatattttgatgtcagtt 662  Q
    |||| | ||||||||||||| ||||||    
T  79701 ctattagtttatattttgatatcagtt 79727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 220; Significance: 1e-120; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 336 - 662
Target Start/End: Original strand, 592384 - 592707
Alignment:
Q  336 tgttagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgtt 435  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  592384 tgttagatataggactcctaagggaagaagttatagaatactagttgtttatttaatagtattataaattagtaactgttacttatgtgcagtaattgct 592483  T
Q  436 gtctgcagtagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggat 535  Q
    ||||||||||||| ||||||||||||||  ||||||||| ||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  592484 gtctgcagtagtgcctgtctactaaactaatatgtaactgctataggagtgagttagtattataaataagatgcaaaggaaaagaaaggtattcagggat 592583  T
Q  536 tgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataatta 635  Q
    || |||||| ||||||||||||||| |||| || |||||||||||||||||||||||||||||| |||||||| |||| |||  |||||||||||  |||    
T  592584 tgggataaaggattggtagggagagcccaagctctcgaattcttggaggggagagaaccaagaccctcgaatttcttgggat--tatattgtaat-ctta 592680  T
Q  636 ctataaatttatattttgatgtcagtt 662  Q
    |||| | ||||||||||||| ||||||    
T  592681 ctattagtttatattttgatatcagtt 592707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 336 - 669
Target Start/End: Complemental strand, 48637868 - 48637538
Alignment:
Q  336 tgttagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgtt 435  Q
    |||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |    
T  48637868 tgttagatataggactcctaagggcagaggttatagaatactagttgtttatttaatagtattataaattagtaactattacttatgtgcagtaattgct 48637769  T
Q  436 gtctgcagtagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggat 535  Q
    ||||||||||||| ||||||||||||||  ||||||||| ||||| ||| ||||||||||||||||||||||||| || |||||| ||||||| ||||||    
T  48637768 gtctgcagtagtgcctgtctactaaactaatatgtaactgctataggagtgagttagtattataaataagatgcagaggaaaagagaggtattgagggat 48637669  T
Q  536 tgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataatta 635  Q
    || |||||| |||||||||||||||||||| || |||||| ||||||||||||||||||||||||||| |||| |||| |||  |||||||||||  |||    
T  48637668 tgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcaaatttcttgggat--tatattgtaat-ctta 48637572  T
Q  636 ctataaatttatattttgatgtcagtttctatca 669  Q
    |||| | ||||||||||||| |||||| ||||||    
T  48637571 ctattagtttatattttgatatcagttcctatca 48637538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 330 - 669
Target Start/End: Original strand, 40976659 - 40977002
Alignment:
Q  330 ctaaactgttagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagta 429  Q
    ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40976659 ctaaattgttagatataggactcctaagggcagaagttatagaatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagta 40976758  T
Q  430 attgttgtctgcagtagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattc 529  Q
    |||| || ||||||||||  ||| |||||||||||| |||||||| ||||| ||| || ||||| |||||||||||||||| || |||||||||| || |    
T  40976759 attgctggctgcagtagttgctggctactaaacttcaatgtaactgctataggagggaattagtcttataaataagatgcagaggaaaagaaaggcatgc 40976858  T
Q  530 agggattgcgataaatgattgg-------tagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatat 622  Q
    |||||||| |||||| || |||       || ||||||||||| || |||||||||||||||||||||||||||||||||||||||  ||| |||  |||    
T  40976859 agggattgggataaaggactggtatggactatggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaattttttgggat--tat 40976956  T
Q  623 attgtaataattactataaatttatattttgatgtcagtttctatca 669  Q
    |||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  40976957 attgtaat-attactattagtttatattttgatatcagttcctatca 40977002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 344 - 669
Target Start/End: Original strand, 7197623 - 7197929
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 443  Q
    |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||||||| | ||||||||||||||||||||||              
T  7197623 ataggactcctaagggcagtagttatagaataatagtagtttatttaataatattataaattagttactgttacttatgtgcagtaattg---------- 7197712  T
Q  444 tagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataa 543  Q
          |||||||| |||||||||||||||| ||| | ||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |||||    
T  7197713 ------ctgtctacaaaacttctatgtaactgctacaggagagagttagtattataaataagatgcagaggaaaagaaaggcattcagggattgggataa 7197806  T
Q  544 atgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaat 643  Q
    | |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |    
T  7197807 aggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagt 7197903  T
Q  644 ttatattttgatgtcagtttctatca 669  Q
    |||||||||||| |||||| ||||||    
T  7197904 ttatattttgatatcagttcctatca 7197929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 335 - 669
Target Start/End: Original strand, 54994511 - 54994822
Alignment:
Q  335 ctgttagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgt 434  Q
    |||||||  |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||| ||||| ||||||||||||| ||||||||     
T  54994511 ctgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttatgtgtagtaattg- 54994609  T
Q  435 tgtctgcagtagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcaggga 534  Q
                   ||||||||||||||||||||||||| ||||| ||     |||||||||||||||||||||| || ||||||||||||||||||||    
T  54994610 ---------------ctgtctactaaacttctatgtaactgctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcaggga 54994690  T
Q  535 ttgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataatt 634  Q
    ||| |||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||    
T  54994691 ttgggataaaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-ctt 54994787  T
Q  635 actataaatttatattttgatgtcagtttctatca 669  Q
    ||||| | ||||||||||||| |||||| ||||||    
T  54994788 actattagtttatattttgatatcagttcctatca 54994822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 489 - 669
Target Start/End: Complemental strand, 45826329 - 45826152
Alignment:
Q  489 ttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggag 588  Q
    |||||||||||||||||||||| || ||||||||||||||||||||||| |||||| ||| |||||||||||||||| || |||||||||||||||||||    
T  45826329 ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataaaggataggtagggagagaccaagctctcgaattcttggaggggag 45826230  T
Q  589 agaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatca 669  Q
    ||||||||||||||| |||| |||| |||  ||||||||||| |||||||| | ||||||||||||| |||||| ||||||    
T  45826229 agaaccaagactctctaatttcttgggat--tatattgtaat-attactattagtttatattttgatatcagttcctatca 45826152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 363 - 669
Target Start/End: Complemental strand, 2386583 - 2386292
Alignment:
Q  363 aagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcagtagtgtctgtctactaaac 462  Q
    |||||||| |||||||||||||||||||||| |||||||||| ||||| |||| ||| | |||||||||||                |||||||||||||    
T  2386583 aagttatagaatactagttgtttatttaataatattataaataagtaactgttgcttgtctgcagtaattg----------------ctgtctactaaac 2386500  T
Q  463 ttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagac 562  Q
    || |||||||||  |||| ||     |||||||||||||||||||||| || |||||||||| |||||||||||| |||||| ||| |||||||||||||    
T  2386499 ttttatgtaactgttataggac----ttagtattataaataagatgcagaggaaaagaaaggcattcagggattgagataaaggataggtagggagagac 2386404  T
Q  563 caaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaata-------attactataaatttatattttgat 655  Q
    ||| || ||||||||||||||||||||||||| ||||||||||||| |||| |||  ||||||||||||       |||||||| | |||||||||||||    
T  2386403 caagctctcgaattcttggaggggagagaaccgagactctcgaatttcttgggat--tatattgtaatattagtatattactattagtttatattttgat 2386306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 336 - 432
Target Start/End: Complemental strand, 45826453 - 45826357
Alignment:
Q  336 tgttagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaatt 432  Q
    |||||||||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45826453 tgttagatataggactcctaagggcagaagttatagaacactagttgtttatttaatagtattataaattagtaactgttacttatgtgcagtaatt 45826357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 503 - 622
Target Start/End: Original strand, 51274436 - 51274555
Alignment:
Q  503 aagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactct 602  Q
    |||||||| || ||||||| || |||||||||||| |||||| ||| |||||||||||||||| || || |||||||||||||| |||||||||||||||    
T  51274436 aagatgcagaggaaaagaagggcattcagggattgggataaaggataggtagggagagaccaagctctcaaattcttggaggggggagaaccaagactct 51274535  T
Q  603 cgaattccttgagattatat 622  Q
    |||||| |||| ||||||||    
T  51274536 cgaatttcttgggattatat 51274555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 336 - 417
Target Start/End: Original strand, 35389152 - 35389229
Alignment:
Q  336 tgttagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttac 417  Q
    |||||||||||||||||||||| | | |||||||| |||| |||||||||||||||||    ||| ||||||||||||||||    
T  35389152 tgttagatataggactcctaagtgcataagttataaaatattagttgtttatttaata----tatcaattagtaattgttac 35389229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 335 - 393
Target Start/End: Original strand, 25184579 - 25184637
Alignment:
Q  335 ctgttagatataggactcctaagggaagaagttatataatactagttgtttatttaata 393  Q
    |||||||||||||||||| |||||| | |||||||| |||| |||||||||||||||||    
T  25184579 ctgttagatataggactcgtaagggcataagttatagaatattagttgtttatttaata 25184637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 547 - 606
Target Start/End: Original strand, 8638949 - 8639008
Alignment:
Q  547 attggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaa 606  Q
    |||||| |||||||| ||| || || |||||||||| |||||||| ||||||||||||||    
T  8638949 attggttgggagagaacaagctctctaattcttggaagggagagacccaagactctcgaa 8639008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 613
Target Start/End: Original strand, 42510646 - 42510688
Alignment:
Q  570 tcgaattcttggaggggagagaaccaagactctcgaattccttg 613  Q
    |||||||||||||||| ||||| |||||||||||||||||||||    
T  42510646 tcgaattcttggaggg-agagacccaagactctcgaattccttg 42510688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 613
Target Start/End: Complemental strand, 49987286 - 49987229
Alignment:
Q  554 gggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttg 613  Q
    ||||||||||||||| || |||||||||| ||||||| ||||||||||||||||| ||||    
T  49987286 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttg 49987229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 159; Significance: 3e-84; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 344 - 671
Target Start/End: Complemental strand, 41051245 - 41050923
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 443  Q
    |||||||||||||||| | |||||||| ||  |||||||||||||||||| | ||     ||||||| |||||||||||||||||||||| |||||||||    
T  41051245 ataggactcctaagggcataagttatagaaagctagttgtttatttaataatgtt-----ttagtaactgttacttatgtgcagtaattgctgtctgcag 41051151  T
Q  444 tagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataa 543  Q
    ||||  || ||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||| || |||||| || ||||||||||||| |||||    
T  41051150 tagttgctatctactaaacttctatgtaactgatataggagagagttagtattataaataagatgcagaggaaaagacagatattcagggattgggataa 41051051  T
Q  544 atgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctc-gaattccttgagattatatattgtaataattactataaa 642  Q
    | ||| |||||||||||||||| || | |||||||||||||||| ||||||||||||||| ||||| |||| |||  | |||||| ||||||||||||||    
T  41051050 aggataggtagggagagaccaagctcttgaattcttggaggggacagaaccaagactctcggaatttcttgggat--tctattgtgataattactataaa 41050953  T
Q  643 tttat-attttgatgtcagtttctatcaac 671  Q
    ||||| |||||||| |||||||||||||||    
T  41050952 tttataattttgatatcagtttctatcaac 41050923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 450 - 694
Target Start/End: Complemental strand, 39703034 - 39702793
Alignment:
Q  450 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 549  Q
    ||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||| ||||||| |||||||||| |||||||||||| |||||| |||     
T  39703034 ctgtctactaaacttctatgtaactgctataggagagagtttgtattataaataagttgcaaaggaaaagaaaggcattcagggattgggataaaggatc 39702935  T
Q  550 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 649  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |||||||    
T  39702934 ggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatat 39702838  T
Q  650 tttgatgtcagtttctatcaaccggtatcagagcaattctgatcc 694  Q
    |||||| |||||| |||||||| ||||||||||||||||||||||    
T  39702837 tttgatatcagttcctatcaactggtatcagagcaattctgatcc 39702793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 450 - 669
Target Start/End: Complemental strand, 39701804 - 39701588
Alignment:
Q  450 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 549  Q
    ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||| |||||||||||| |||||| ||||    
T  39701804 ctgtctactaaacttctatgtaactgctataggagagagttagtattataaataagatgcagaggaaaagaaaggcattcagggattgggataaaggatt 39701705  T
Q  550 ggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatat 649  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |||||||    
T  39701704 ggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatat 39701608  T
Q  650 tttgatgtcagtttctatca 669  Q
    |||||| |||||| ||||||    
T  39701607 tttgatatcagttcctatca 39701588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 344 - 669
Target Start/End: Original strand, 22950174 - 22950476
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 443  Q
    |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||              
T  22950174 ataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg---------- 22950263  T
Q  444 tagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataa 543  Q
          ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| || |||| |||||||||||||||||| |||||    
T  22950264 ------ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaataaaggtattcagggattgggataa 22950353  T
Q  544 atgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaat 643  Q
    | |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |    
T  22950354 aggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagt 22950450  T
Q  644 ttatattttgatgtcagtttctatca 669  Q
    |||||||||||| |||||| ||||||    
T  22950451 ttatattttgatatcagttcctatca 22950476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 344 - 669
Target Start/End: Complemental strand, 29526346 - 29526038
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 443  Q
    |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||           ||| || ||    
T  29526346 ataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgt-----------tgtgtgtag 29526258  T
Q  444 tagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgat-a 542  Q
    || |  ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| || ||||||||||||||||||||||| ||| |    
T  29526257 taattgctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggatta 29526162  T
Q  543 aatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaa 642  Q
    || |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||| |||  |||||||||||  ||||||| |     
T  29526161 aaggattggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcggatttcttgggat--tatattgtaat-cttactattag 29526065  T
Q  643 tttatattttgatgtcagtttctatca 669  Q
    ||||||||||||| |||||| ||||||    
T  29526064 tttatattttgatatcagttcctatca 29526038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 450 - 695
Target Start/End: Complemental strand, 29527464 - 29527225
Alignment:
Q  450 ctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgatt 549  Q
    ||||||||||||||||||||||||  |||| ||   || |||||||| ||||||||||||| || ||||||||||||||||||||||| |||||| ||||    
T  29527464 ctgtctactaaacttctatgtaacagctat-tg---gacttagtattttaaataagatgcagaggaaaagaaaggtattcagggattgggataaaggatt 29527369  T
Q  550 ggtagggagagaccaaactttcgaattcttgga-ggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttata 648  Q
    |||||||||||||||| || | ||||||||||| |||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | ||||||    
T  29527368 ggtagggagagaccaagctcttgaattcttggagggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttata 29527272  T
Q  649 ttttgatgtcagtttctatcaaccggtatcagagcaattctgatcca 695  Q
    ||||||| || ||| |||||||| ||||||| |||| ||||||||||    
T  29527271 ttttgatatctgttcctatcaactggtatcaaagcagttctgatcca 29527225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 452 - 670
Target Start/End: Original strand, 19934559 - 19934770
Alignment:
Q  452 gtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattgg 551  Q
    |||||||||||||||||||||| ||||||    ||| |||||||||||||||||||||| || |||||||||| ||| |||||||| |||||| ||||||    
T  19934559 gtctactaaacttctatgtaacaactata----agacttagtattataaataagatgcagaggaaaagaaaggcatttagggattgggataaaggattgg 19934654  T
Q  552 tagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattt 651  Q
    |||||||||||||| || |||||| |||||||||||||||||||||||||| ||||| |||| |||  |||||||||||  ||||||| | |||||||||    
T  19934655 tagggagagaccaagctctcgaatacttggaggggagagaaccaagactcttgaatttcttgggat--tatattgtaat-cttactattagtttatattt 19934751  T
Q  652 tgatgtcagtttctatcaa 670  Q
    |||| |||||| |||||||    
T  19934752 tgatatcagttcctatcaa 19934770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 556 - 669
Target Start/End: Original strand, 19139374 - 19139484
Alignment:
Q  556 gagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgat 655  Q
    |||| ||||| || || |||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |||| ||||||||    
T  19139374 gagaaaccaagctctctaattcttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttaaattttgat 19139470  T
Q  656 gtcagtttctatca 669  Q
     |||||||||||||    
T  19139471 atcagtttctatca 19139484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 548 - 608
Target Start/End: Complemental strand, 35144618 - 35144558
Alignment:
Q  548 ttggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaatt 608  Q
    |||| |||||||||||||  | |||||||||||||||||||||||||||||||||||||||    
T  35144618 ttggaagggagagaccaaggtctcgaattcttggaggggagagaaccaagactctcgaatt 35144558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 41108823 - 41108897
Alignment:
Q  339 tagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttac 417  Q
    ||||||||||||||||||||| | |||||||| |||| |||||||||||||||||    ||| ||||||||||||||||    
T  41108823 tagatataggactcctaagggcataagttatagaatattagttgtttatttaata----tattaattagtaattgttac 41108897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 339 - 417
Target Start/End: Original strand, 18690882 - 18690956
Alignment:
Q  339 tagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttac 417  Q
    ||||||||||||||||||| | | |||||||| |||| |||||||||||||||||    ||| ||||||||||||||||    
T  18690882 tagatataggactcctaagagcataagttatagaatattagttgtttatttaata----tattaattagtaattgttac 18690956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 364 - 433
Target Start/End: Original strand, 19934487 - 19934556
Alignment:
Q  364 agttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 433  Q
    ||||||| |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  19934487 agttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 19934556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 15027103 - 15027009
Alignment:
Q  4 aaatacatttgacgtaacataattagttgaggtaaatggacacctgacgtgtgatcttaaaatcaagtaaccttgagttgtgcataaacagtgaaa 99  Q
    ||||||||||| | |||||||||| ||||||||||||| ||||  | |  |||||| |||||||||| |||||| ||||||||||| | |||||||    
T  15027103 aaatacatttggcataacataattggttgaggtaaatg-acactcggctagtgatcctaaaatcaaggaaccttaagttgtgcatatatagtgaaa 15027009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 344 - 415
Target Start/End: Complemental strand, 29527552 - 29527481
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgtt 415  Q
    |||||||||||||||| || ||||||| |||| |||| ||||| |||||| |||||||||| ||||| ||||    
T  29527552 ataggactcctaagggcagcagttatagaataatagtagtttacttaataatattataaataagtaactgtt 29527481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 336 - 393
Target Start/End: Complemental strand, 33215419 - 33215362
Alignment:
Q  336 tgttagatataggactcctaagggaagaagttatataatactagttgtttatttaata 393  Q
    |||||||||||||||||||||||  | ||||| || |||| |||||||||||||||||    
T  33215419 tgttagatataggactcctaaggccataagttttagaatattagttgtttatttaata 33215362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 34272271 - 34272337
Alignment:
Q  4 aaatacatttgacgtaacataattagttgaggtaaatggacacctgacgtgtgatcttaaaatcaag 70  Q
    ||||||||||| | |||||||||| ||| |||||||||||||  ||||  |||||| ||||||||||    
T  34272271 aaatacatttggcataacataattggtttaggtaaatggacatgtgactagtgatcctaaaatcaag 34272337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 157; Significance: 4e-83; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 344 - 670
Target Start/End: Original strand, 40254297 - 40254617
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 443  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||| ||||||||     
T  40254297 ataggactcctaagggaagaagctatagaatactagttgtttatttaataatattataaattagtaactgttacttgtgtgcagtaattgctgtctgcat 40254396  T
Q  444 tagtg--tctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgat 541  Q
     | |   | | |||||||||||||||||||||| ||||| |   |||||  |||||||||||||||||| || |||||||||| |||||||||||| |||    
T  40254397 caattgttatctctactaaacttctatgtaactgctatagg---gagttcatattataaataagatgcagaggaaaagaaagg-attcagggattgggat 40254492  T
Q  542 aaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataa 641  Q
    ||| |||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||| |||| |||  | ||||||||| |||||||| |    
T  40254493 aaaggattggtagggagagaccaagctctc-aattcttggaggggagagaaccaagactctcgaatttcttgggat--tctattgtaat-attactatta 40254588  T
Q  642 atttatattttgatgtcagtttctatcaa 670  Q
    |||||||||||||| || |||||||||||    
T  40254589 atttatattttgatatctgtttctatcaa 40254617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 346 - 669
Target Start/End: Complemental strand, 2411378 - 2411061
Alignment:
Q  346 aggactcctaagggaagaagttatataatactagt----tgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgc 441  Q
    ||||||||||| |||||||||||||||||||||||    ||||||||||||| |||||||||||||||| | ||||  ||||||||||| || | |||||    
T  2411378 aggactcctaaaggaagaagttatataatactagtaaattgtttatttaata-tattataaattagtaactattac--atgtgcagtaactgctatctgc 2411282  T
Q  442 agtag-tgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataa-gatgcaaagaaaaagaaaggtattcagggattgcg 539  Q
    ||||  ||| | ||| | |||||| ||||||||| ||||| |   |||||||||||||||| || | |||| || |||| |  || |||| |  |||  |    
T  2411281 agtaactgt-tatctgcaaaacttttatgtaacttctatagg---gagttagtattataaacaaagttgcagaggaaaataggggcattcggttatttgg 2411186  T
Q  540 ataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactat 639  Q
    ||||| |||||||||||||||||||| ||  ||||||| |||||||||||||| |||||||||| |||| |||| |||  |  |||||||| ||||||||    
T  2411185 ataaaggattggtagggagagaccaagct--cgaattcctggaggggagagaatcaagactctcaaatttcttgggat--tcgattgtaat-attactat 2411091  T
Q  640 aaatttatattttgatgtcagtttctatca 669  Q
     | ||||||||||||| |||||||||||||    
T  2411090 tagtttatattttgatatcagtttctatca 2411061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 554 - 662
Target Start/End: Original strand, 21661182 - 21661287
Alignment:
Q  554 gggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttg 653  Q
    |||||||||||| || ||||||| ||||||||||||||||||||||||||||||| |||| ||  ||||||||||||  ||||||| | |||||||||||    
T  21661182 gggagagaccaagctctcgaattattggaggggagagaaccaagactctcgaatttcttggga--atatattgtaat-cttactattagtttatattttg 21661278  T
Q  654 atgtcagtt 662  Q
    || ||||||    
T  21661279 atatcagtt 21661287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 547 - 613
Target Start/End: Complemental strand, 5176665 - 5176600
Alignment:
Q  547 attggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttg 613  Q
    |||||| |||||||||||| || ||||||||||||| |||||||| |||||||||||||||||||||    
T  5176665 attggttgggagagaccaagctctcgaattcttgga-gggagagacccaagactctcgaattccttg 5176600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 335 - 393
Target Start/End: Complemental strand, 36241424 - 36241366
Alignment:
Q  335 ctgttagatataggactcctaagggaagaagttatataatactagttgtttatttaata 393  Q
    ||||||||||||||||||||||||| | |||||||| |||| |||||||||||||||||    
T  36241424 ctgttagatataggactcctaagggcataagttatagaatattagttgtttatttaata 36241366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 188 - 297
Target Start/End: Original strand, 37263988 - 37264096
Alignment:
Q  188 taagtcttcttctatcttcctactggtttcttaagtttacaatttacattgtattcaatcaatttctcttgtattgtgtttttcattaaattcaatacaa 287  Q
    |||||||||||||||||| ||||  |||||||| |||  | |||| || ||||| | ||||||||||||||||||||||  |||| | || |||||||||    
T  37263988 taagtcttcttctatctttctacaagtttctta-gttgtccatttgcactgtatcccatcaatttctcttgtattgtgtaattcagtgaactcaatacaa 37264086  T
Q  288 agttatttca 297  Q
    ||||||||||    
T  37264087 agttatttca 37264096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 591 - 669
Target Start/End: Complemental strand, 26247043 - 26246968
Alignment:
Q  591 aaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatca 669  Q
    |||||||||||||||||| |||| |||  |||||||||||  ||||||| | ||||||||||||| |||||| ||||||    
T  26247043 aaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatattttgatatcagttcctatca 26246968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 1e-77; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 335 - 581
Target Start/End: Complemental strand, 45638997 - 45638746
Alignment:
Q  335 ctgttagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgt 434  Q
    |||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||     
T  45638997 ctgttagatatatgactcctaagggcagaagttatagaatactagttgtttatttaatagtattataaattagtaactgttacttatgtgcggtaattgc 45638898  T
Q  435 tgtctgcagtagtgtctgtctactaaacttctatgtaactactatatgagagagttagtatt-----ataaataagatgcaaagaaaaagaaaggtattc 529  Q
    |||||||||||||  ||||| ||||||||||||||||||| ||||| ||| |||||||||||     |||||||||||||| || |||||||||| ||||    
T  45638897 tgtctgcagtagttgctgtcaactaaacttctatgtaactgctataggagggagttagtattataatataaataagatgcagaggaaaagaaaggcattc 45638798  T
Q  530 agggattgcgataaatgattggtagggagagaccaaactttcgaattcttgg 581  Q
    |||||||| |||||| | | |||||||||||||||| || ||||||||||||    
T  45638797 agggattgggataaagggtaggtagggagagaccaagctctcgaattcttgg 45638746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 158 - 319
Target Start/End: Original strand, 49272656 - 49272817
Alignment:
Q  158 ctttaagattaatgacttaagtctttggactaagtcttcttctatcttcctactggtttcttaagtttacaatttacattgtattcaatcaatttctctt 257  Q
    |||| ||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||  ||||||||| | ||||| |||||||||||||    
T  49272656 ctttgagagtaatgacttaagtttttggactaagtcttcttctatcttcctactagtttcttaagttgtcaatttacactttattcgatcaatttctctt 49272755  T
Q  258 gtattgtgtttttcattaaattcaatacaaagttatttcatctatttcactgcattcatcaa 319  Q
    ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||    
T  49272756 gtattgtgtttttcattgaattcaatgcaaagctatttcatctatttcactgcattcatcaa 49272817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 344 - 670
Target Start/End: Original strand, 11961941 - 11962244
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 443  Q
    |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||              
T  11961941 ataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg---------- 11962030  T
Q  444 tagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataa 543  Q
          |||||||||||| |||||||||||  ||||| ||     |||||||||||||||||||||| || |||||||||||||||||| |||| | |||    
T  11962031 ------ctgtctactaaatttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcaggcattggggtaa 11962120  T
Q  544 atgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaat 643  Q
    | |||||||||||| ||||||| || |||||  |||||||||||||||||||||||||||||||| |||| |||  |||||||||||  | ||||| | |    
T  11962121 aggattggtagggatagaccaagctctcgaacacttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-ctaactattagt 11962217  T
Q  644 ttatattttgatgtcagtttctatcaa 670  Q
    |||||||||||| |||||| |||||||    
T  11962218 ttatattttgatatcagttcctatcaa 11962244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 113 - 335
Target Start/End: Complemental strand, 52724053 - 52723825
Alignment:
Q  113 catgaagaaaattgaagaaaagtctccttctccccttgatattctctttaagattaatgacttaagtctttggactaagtcttcttctatcttcctactg 212  Q
    |||||||||||||||||||||||||||||||| | ||| || |||||   ||| |||||| ||| ||||||| ||||| ||||||||||||||  ||       
T  52724053 catgaagaaaattgaagaaaagtctccttctctctttggtactctctg--agagtaatgatttaggtctttgaactaaatcttcttctatctttttaa-- 52723958  T
Q  213 gtttcttaagtttacaatttacattgtattcaatcaatttctcttgtattgtgtttttcattaaattcaatacaaagttatttcatc-----------ta 301  Q
    |||  |||||||  ||||||||||| ||||| ||| |||||||||||||| || |||||| | ||||||||||||||||||||||||           ||    
T  52723957 gttcattaagttgtcaatttacattctattcgatcgatttctcttgtattttg-ttttcaatgaattcaatacaaagttatttcatccaattgttttgta 52723859  T
Q  302 tttcactgcattcatcaattataaagggctaaac 335  Q
    ||||||| ||||||||||||| ||||||||||||    
T  52723858 tttcactacattcatcaattacaaagggctaaac 52723825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 540 - 669
Target Start/End: Original strand, 3567053 - 3567179
Alignment:
Q  540 ataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactat 639  Q
    ||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||  | ||||| ||||||||  | ||||||||| ||||||||    
T  3567053 ataaaggataggtagggagagaccaaactatcgaattcttggaggggagagaaccaagacaattgaatttcttgagat--tgtattgtaat-attactat 3567149  T
Q  640 aaatttatattttgatgtcagtttctatca 669  Q
     |  |||||||||||| |||||||||||||    
T  3567150 taggttatattttgatctcagtttctatca 3567179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 546 - 615
Target Start/End: Original strand, 27869367 - 27869436
Alignment:
Q  546 gattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgag 615  Q
    |||||||||||||||||||| || | ||||||||||| ||||||||  ||||||||||||||| ||||||    
T  27869367 gattggtagggagagaccaagctcttgaattcttggaagggagagatgcaagactctcgaatttcttgag 27869436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 613
Target Start/End: Original strand, 32992387 - 32992445
Alignment:
Q  554 gggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttg 613  Q
    ||||||||| || || |||| ||||||||||| ||||| |||||||||||||||||||||    
T  32992387 gggagagacaaagctctcgagttcttggaggg-agagacccaagactctcgaattccttg 32992445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 613
Target Start/End: Original strand, 54291698 - 54291731
Alignment:
Q  580 ggaggggagagaaccaagactctcgaattccttg 613  Q
    ||||||||||||||||||||||||||||| ||||    
T  54291698 ggaggggagagaaccaagactctcgaatttcttg 54291731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 135; Significance: 6e-70; HSPs: 2)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 335 - 694
Target Start/End: Original strand, 10971 - 11314
Alignment:
Q  335 ctgttagatataggactcctaagggaagaagttatataatactagt----tgtttatttaatagtattataaattagtaattgttacttatgtgcagtaa 430  Q
    |||||||  |||||||||||||||| || ||||||| |||| ||||    ||||||||||||| ||||||||| |||||| ||||| |||||||||||||    
T  10971 ctgttagtaataggactcctaagggcagcagttatagaatattagtagattgtttatttaata-tattataaagtagtaactgttagttatgtgcagtaa 11069  T
Q  431 ttgttgtctgcagtagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattca 530  Q
    |||                ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |  ||||||||| ||||||    
T  11070 ttg----------------ctgtctactaaacttctatgtaactgctataggagagagttagtattataaataagatgcagaagaaaagaaagatattca 11153  T
Q  531 gggattgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaat 630  Q
    ||||||| |||||| |||||||||||||||||||| || |||||  |||||| ||||||||||||||||||||||||| |||| |||  |||||||||||    
T  11154 gggattgggataaaggattggtagggagagaccaagctctcgaaaacttggaagggagagaaccaagactctcgaatttcttgggat--tatattgtaat 11251  T
Q  631 aattactataaatttatattttgatgtcagtttctatcaaccggtatcagagcaattctgatcc 694  Q
      ||||||| | ||||||||||||| |||||| ||||||||  |||||| |||| |||||||||    
T  11252 -cttactattagtttatattttgatatcagttcctatcaactcgtatcaaagcagttctgatcc 11314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 344 - 669
Target Start/End: Original strand, 12136 - 12437
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 443  Q
    |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||||||||        
T  12136 ataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgttgtct---- 12231  T
Q  444 tagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataa 543  Q
                ||||| ||||||||||||  ||||| ||     || ||||||||||||||||||| || ||||||||| ||||||||||||| |||||    
T  12232 ------------actaa-cttctatgtaacagctataggac----ttggtattataaataagatgcagaggaaaagaaagttattcagggattgggataa 12314  T
Q  544 atgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaat 643  Q
    | ||| |||||||||||||||| || | ||| |||||||||||||||||||||||||||| |||| |||| |||  ||||||||||| |||||||| | |    
T  12315 aggataggtagggagagaccaagctcttgaactcttggaggggagagaaccaagactctctaatttcttgggat--tatattgtaat-attactattagt 12411  T
Q  644 ttatattttgatgtcagtttctatca 669  Q
    |||||||||||| | |||| ||||||    
T  12412 ttatattttgatataagttcctatca 12437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 131; Significance: 1e-67; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 344 - 695
Target Start/End: Original strand, 6081112 - 6081440
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 443  Q
    |||||||||||||||| || ||||||  |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||              
T  6081112 ataggactcctaagggcagcagttatggaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg---------- 6081201  T
Q  444 tagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataa 543  Q
          ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| |  ||||||||||||||||||||||| |||||    
T  6081202 ------ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaagaaaagaaaggtattcagggattgggataa 6081291  T
Q  544 atgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaat 643  Q
    | |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  | |||||||||  ||||||| | |    
T  6081292 aggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tgtattgtaat-cttactattagt 6081388  T
Q  644 ttatattttgatgtcagtttctatcaaccggtatcagagcaattctgatcca 695  Q
    |||||||||||| |||||| |||||||| |||||||||||| ||||||||||    
T  6081389 ttatattttgatatcagttcctatcaactggtatcagagcagttctgatcca 6081440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 344 - 669
Target Start/End: Original strand, 6082319 - 6082621
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 443  Q
    |||||||||||||||| || ||||||  |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||              
T  6082319 ataggactcctaagggcagcagttatggaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg---------- 6082408  T
Q  444 tagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataa 543  Q
          ||||||||||||||||||||||||  ||||| ||     ||| |||||||||||||||||| |  ||||||||||||||||||||||| |||||    
T  6082409 ------ctgtctactaaacttctatgtaacagctataggac----ttattattataaataagatgcagaagaaaagaaaggtattcagggattgggataa 6082498  T
Q  544 atgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaat 643  Q
    | |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  | |||||||||  ||||||| | |    
T  6082499 aggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tgtattgtaat-cttactattagt 6082595  T
Q  644 ttatattttgatgtcagtttctatca 669  Q
    |||||||||||| |||||| ||||||    
T  6082596 ttatattttgatatcagttcctatca 6082621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 114 - 299
Target Start/End: Original strand, 39773311 - 39773496
Alignment:
Q  114 atgaagaaaattgaagaaaagtctccttctccccttgatattctctttaagattaatgacttaagtctttggactaagtcttcttctatcttcctactgg 213  Q
    |||||||| |||||||||||||||| ||||||| ||| || |||| || ||| ||||| |||| |||||| ||||||||||||||||||||| ||||| |    
T  39773311 atgaagaatattgaagaaaagtctctttctccctttggtactctccttgagagtaatggcttaggtctttagactaagtcttcttctatctttctactag 39773410  T
Q  214 tttcttaagtttacaatttacattgtattcaatcaatttctcttgtattgtgtttttcattaaattcaatacaaagttatttcatc 299  Q
    ||  |||| ||  ||||||||||| |||||||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||    
T  39773411 ttcattaaattgtcaatttacattctattcaatcaatttctcttgtattgtattttttagtgaattcaatacaaagttatttcatc 39773496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 548 - 669
Target Start/End: Original strand, 17901154 - 17901274
Alignment:
Q  548 ttggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttat 647  Q
    |||| ||||||||||||| || ||||||||||||||||||||| ||||||||||||||||| |||| ||  || ||||||||| |||||||| |||||||    
T  17901154 ttgggagggagagaccaagctctcgaattcttggaggggagagtaccaagactctcgaatttcttggga--atctattgtaat-attactattaatttat 17901250  T
Q  648 a--ttttgatgtcagtttctatca 669  Q
    |  ||||||| |||||||||||||    
T  17901251 atgttttgatatcagtttctatca 17901274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 29346851 - 29346786
Alignment:
Q  140 ttctccccttgatattctctttaagattaatgacttaagtctttggactaagtcttcttctatctt 205  Q
    ||||||| ||| || ||||||| ||  |||||||||||||||||||||||||||||||||||||||    
T  29346851 ttctccctttggtactctctttgagggtaatgacttaagtctttggactaagtcttcttctatctt 29346786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 344 - 417
Target Start/End: Original strand, 27021157 - 27021233
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactag----ttgtttatttaatagtattataaattagtaattgttac 417  Q
    |||||||||||||||| ||||||||||||||| |||    |||||||||||||| || ||||||||||||||||||||    
T  27021157 ataggactcctaagggcagaagttatataatattagtaaattgtttatttaata-tactataaattagtaattgttac 27021233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 337 - 393
Target Start/End: Complemental strand, 17166187 - 17166131
Alignment:
Q  337 gttagatataggactcctaagggaagaagttatataatactagttgtttatttaata 393  Q
    ||||||||||||||||||||||  | |||||||| |||| |||||||||||||||||    
T  17166187 gttagatataggactcctaaggccataagttatagaatattagttgtttatttaata 17166131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 42863781 - 42863819
Alignment:
Q  167 taatgacttaagtctttggactaagtcttcttctatctt 205  Q
    |||||||||||||||| |||||| |||||||||||||||    
T  42863781 taatgacttaagtcttaggactaggtcttcttctatctt 42863819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 344 - 691
Target Start/End: Complemental strand, 18133290 - 18132967
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 443  Q
    |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||              
T  18133290 ataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg---------- 18133201  T
Q  444 tagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataa 543  Q
          ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| || ||||||||||||||||||||||| |||||    
T  18133200 ------ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataa 18133111  T
Q  544 atgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaat 643  Q
    | ||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |    
T  18133110 aggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagt 18133014  T
Q  644 ttatattttgatgtcagtttctatcaaccggtatcagagcaattctga 691  Q
    |||||||||||| |||||| ||||| || |||||||||||| ||||||    
T  18133013 ttatattttgatatcagttcctatc-actggtatcagagcagttctga 18132967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 334 - 669
Target Start/End: Original strand, 21535609 - 21535921
Alignment:
Q  334 actgttagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 433  Q
    ||||||||  |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||| ||||| |||||||| | || ||||||||    
T  21535609 actgttagtaataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtatgtagtaattg 21535708  T
Q  434 ttgtctgcagtagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcaggg 533  Q
                    ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| || |||||||||||||||||||    
T  21535709 ----------------ctgtctactaaacttctatgtaacagctataggaa----ttagtattataaataagatgcagaggaaaagaaaggtattcaggg 21535788  T
Q  534 attgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataat 633  Q
    |||| |||||| ||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||  |    
T  21535789 attgggataaaggataggtagggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-ct 21535885  T
Q  634 tactataaatttatattttgatgtcagtttctatca 669  Q
    |||||| | ||||||||||||| |||||| ||||||    
T  21535886 tactattagtttatattttgatatcagttcctatca 21535921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 344 - 669
Target Start/End: Complemental strand, 18132084 - 18131782
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 443  Q
    |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||              
T  18132084 ataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg---------- 18131995  T
Q  444 tagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataa 543  Q
          ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| || ||||||||||||||||||||||| |||||    
T  18131994 ------ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattgggataa 18131905  T
Q  544 atgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaat 643  Q
    | |||||||||||||||||||| || |||||| |||||| ||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | |    
T  18131904 aggattggtagggagagaccaagctctcgaatacttggaagggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagt 18131808  T
Q  644 ttatattttgatgtcagtttctatca 669  Q
    |||||||||||| |||||| ||||||    
T  18131807 ttatattttgatatcagttcctatca 18131782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 489 - 669
Target Start/End: Complemental strand, 21395768 - 21395591
Alignment:
Q  489 ttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggag 588  Q
    |||||||||||||||||||||| || |||||||||| |||||||||||| |||||| |||||||||||||||||||| || |||||||||||||||||||    
T  21395768 ttagtattataaataagatgcagaggaaaagaaaggcattcagggattgggataaaggattggtagggagagaccaagctctcgaattcttggaggggag 21395669  T
Q  589 agaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatca 669  Q
    | |||||||||||| ||||| |||| ||||||||  | ||||  ||||| | | ||||||||||||| |||||||||||||    
T  21395668 acaaccaagactcttgaatttcttgggattatat--tataatc-ttactgttagtttatattttgatatcagtttctatca 21395591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 560 - 667
Target Start/End: Complemental strand, 7033443 - 7033339
Alignment:
Q  560 gaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtca 659  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||  |||||||||||  ||||||| | ||||||||||||| |||    
T  7033443 gaccaagctttcgaattcttggaggggagagaaccaagactctcgaatttcttgggat--tatattgtaat-cttactattagtttatattttgatatca 7033347  T
Q  660 gtttctat 667  Q
    ||| ||||    
T  7033346 gttcctat 7033339  T

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Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 548 - 669
Target Start/End: Original strand, 4303035 - 4303153
Alignment:
Q  548 ttggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttat 647  Q
    |||| ||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| |||| ||  || |||||| || |||| ||| |||||      
T  4303035 ttggaagggagagaccaagctctcgaattcttggaggggagagaaccaagactctagaatttcttggga--atctattgt-attattaatattaatttgg 4303131  T
Q  648 attttgatgtcagtttctatca 669  Q
    ||||||||  ||||||||||||    
T  4303132 attttgataccagtttctatca 4303153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 451 - 537
Target Start/End: Complemental strand, 7033525 - 7033443
Alignment:
Q  451 tgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattg 537  Q
    |||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| || |||||||||||||||||||||||    
T  7033525 tgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattg 7033443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 559 - 669
Target Start/End: Original strand, 16189671 - 16189780
Alignment:
Q  559 agaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataattactataaatttata--ttttgatg 656  Q
    ||||||| || ||||||||||||||||||||||||||| |||||| | |||| || |||  | ||||||||| |||||||| ||||||||  |||||||     
T  16189671 agaccaagctctcgaattcttggaggggagagaaccaacactctcaatttccatgggat--tctattgtaat-attactattaatttatatgttttgata 16189767  T
Q  657 tcagtttctatca 669  Q
    |||||||||||||    
T  16189768 tcagtttctatca 16189780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 377 - 439
Target Start/End: Complemental strand, 7033583 - 7033521
Alignment:
Q  377 tagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtct 439  Q
    |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||||||||    
T  7033583 tagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattgttgtct 7033521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 256
Target Start/End: Complemental strand, 6033388 - 6033315
Alignment:
Q  184 ggactaagtcttcttctatcttcctactggtttcttaagtttacaa-tttacattgtattcaatcaatttctct 256  Q
    |||||||||||||||||||||| ||||   |||||||||||  ||| ||| |||||||||| ||||||||||||    
T  6033388 ggactaagtcttcttctatctttctacaattttcttaagttgtcaattttgcattgtattccatcaatttctct 6033315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 111; Significance: 1e-55; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 334 - 669
Target Start/End: Complemental strand, 205901 - 205589
Alignment:
Q  334 actgttagatataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattg 433  Q
    ||||||||  |||||||||||| ||| || ||||||| |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||    
T  205901 actgttagtaataggactcctacgggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg 205802  T
Q  434 ttgtctgcagtagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcaggg 533  Q
                    ||||||||||||||||||||||||  ||||| ||     |||||||||||||||||||||| |  ||||||||| |||||||||    
T  205801 ----------------ctgtctactaaacttctatgtaacagctataggac----ttagtattataaataagatgcagaagaaaagaaagatattcaggg 205722  T
Q  534 attgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatatattgtaataat 633  Q
    |||| |||||| |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| |||  | |||||||||  |    
T  205721 attgggataaaggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggat--tgtattgtaat-ct 205625  T
Q  634 tactataaatttatattttgatgtcagtttctatca 669  Q
    |||||| | ||||||||||||| |||||| ||||||    
T  205624 tactattagtttatattttgatatcagttcctatca 205589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 489 - 669
Target Start/End: Complemental strand, 211843 - 211666
Alignment:
Q  489 ttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataaatgattggtagggagagaccaaactttcgaattcttggaggggag 588  Q
    |||||||||||||||||||||| |  ||||||||||||||||||||||| |||||| |||||||||||||||||||| || |||||| ||||||||||||    
T  211843 ttagtattataaataagatgcagaagaaaagaaaggtattcagggattgggataaaggattggtagggagagaccaagctctcgaatacttggaggggag 211744  T
Q  589 agaaccaagactctcgaattccttgagattatatattgtaataattactataaatttatattttgatgtcagtttctatca 669  Q
    |||||||||||||||||||| |||| |||  | |||||||||  ||||||| | ||||||||||||| |||||| ||||||    
T  211743 agaaccaagactctcgaatttcttgggat--tgtattgtaat-cttactattagtttatattttgatatcagttcctatca 211666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 109; Significance: 2e-54; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 344 - 622
Target Start/End: Complemental strand, 178165 - 177907
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaattagtaattgttacttatgtgcagtaattgttgtctgcag 443  Q
    |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||| ||||| |||||||| |||| ||||||||              
T  178165 ataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaataagtaactgttacttgtgtgtagtaattg---------- 178076  T
Q  444 tagtgtctgtctactaaacttctatgtaactactatatgagagagttagtattataaataagatgcaaagaaaaagaaaggtattcagggattgcgataa 543  Q
          |||||||||||| |||||||||||  ||||| ||     |||||||||||||||||||||| || ||||||||||||||||||||||| | |||    
T  178075 ------ctgtctactaaatttctatgtaacagctataggac----ttagtattataaataagatgcagaggaaaagaaaggtattcagggattggggtaa 177986  T
Q  544 atgattggtagggagagaccaaactttcgaattcttggaggggagagaaccaagactctcgaattccttgagattatat 622  Q
    | |||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||||| |||| ||||||||    
T  177985 aggattggtagggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgggattatat 177907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 344 - 403
Target Start/End: Original strand, 177784 - 177843
Alignment:
Q  344 ataggactcctaagggaagaagttatataatactagttgtttatttaatagtattataaa 403  Q
    |||||||||||||||| || ||||||| |||| |||| |||||||||||| |||||||||    
T  177784 ataggactcctaagggcagcagttatagaataatagtagtttatttaataatattataaa 177843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 113 - 299
Target Start/End: Complemental strand, 5416 - 5230
Alignment:
Q  113 catgaagaaaattgaagaaaagtctccttctccccttgatattctctttaagattaatgacttaagtctttggactaa-gtcttcttctatcttcctact 211  Q
    ||||||||  ||||||||||||||||| |||||| ||| || |||| || ||| ||||| |||| |||||| |||||| ||| ||||||||||| |||||    
T  5416 catgaagattattgaagaaaagtctccatctccctttggtactctccttgagagtaatggcttaggtctttagactaaagtcgtcttctatctttctact 5317  T
Q  212 ggtttcttaagtttacaatttacattgtattcaatcaatttctcttgtattgtgtttttcattaaattcaatacaaagttatttcatc 299  Q
     |||  |||||||  ||||||||||| |||| || |||||||||||||||||||||||| | | ||||||||||||||||||||||||    
T  5316 agttcattaagttgtcaatttacattctatttaaacaatttctcttgtattgtgttttt-agtgaattcaatacaaagttatttcatc 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 113 - 299
Target Start/End: Original strand, 3874 - 4060
Alignment:
Q  113 catgaagaaaattgaagaaaagtctccttctccccttgatattctctttaagattaatgacttaagtctttggactaa-gtcttcttctatcttcctact 211  Q
    ||||||||  ||||||||||||||||| |||||| ||| || |||| || ||| ||||| |||| |||||| |||||| ||| ||||||||||| |||||    
T  3874 catgaagattattgaagaaaagtctccatctccctttggtactctccttgagagtaatggcttaggtctttagactaaagtcgtcttctatctttctact 3973  T
Q  212 ggtttcttaagtttacaatttacattgtattcaatcaatttctcttgtattgtgtttttcattaaattcaatacaaagttatttcatc 299  Q
     |||  |||||||  ||||||||||| |||| || |||||||||||||||||||||||| | | ||||||||||||||||||||||||    
T  3974 agttcattaagttgtcaatttacattctatttaaacaatttctcttgtattgtgttttt-agtgaattcaatacaaagttatttcatc 4060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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