View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21549_low_3 (Length: 452)
Name: NF21549_low_3
Description: NF21549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21549_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 11 - 434
Target Start/End: Original strand, 38369981 - 38370411
Alignment:
| Q |
11 |
gaagaagtccaacaatgaaagctcaaacacactccacccttaactgcagccagctgttttttcaatttatccttttcaagcaagtaaactttcatcacat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38369981 |
gaagaagtccaacaatgaaagctcaaacacactccacccttaactgcagccagctgttttttcaatttatccttttcaagcaagtaaactttcatcacat |
38370080 |
T |
|
| Q |
111 |
cagcgacaacattatctctagaaagagattgagcctcattaaaagaagcaaatttggtaaatgccctaaattcatccca-------aactgaaatggaat |
203 |
Q |
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| T |
38370081 |
cagcgacaacattatctctagaaagagatcgagcctcattaaaagaagcaaatttggtaaatgccctaaattcatcccactcagcaaactgaaatggaat |
38370180 |
T |
|
| Q |
204 |
gtaactttttatattcatttgagtaaccgaatcacgaaccatcctatgatcaattttgttgagcttgaaatgtttggcaatacgagatttcataatcaaa |
303 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38370181 |
gtaactttttatagtcatttgagtaaccgaatcacgaaccatcctatgatcaattttgttgagcttgaaatgcttggcaatacgagatttcataatcaaa |
38370280 |
T |
|
| Q |
304 |
ggacatttggtaatatgttggacttggtttagatgagatatacctgtccttccagaaataaactgtttcccacaagttttacattcacacagttctttac |
403 |
Q |
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| T |
38370281 |
ggacatttggtaatatgttggacttggtttagatgagatatacctgtccttccagaaataaactgtttcccacaagttttacattcacacagttctttac |
38370380 |
T |
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| Q |
404 |
catctgcttcaattttaacaaagtagttcca |
434 |
Q |
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| T |
38370381 |
catctgcttcaattttaacaaagtagttcca |
38370411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 10 - 434
Target Start/End: Original strand, 38379873 - 38380301
Alignment:
| Q |
10 |
agaagaagtccaacaatgaaagctcaaacacactccacccttaactgcagccagctgttttttcaatttatccttttcaagcaagtaaactttcatcaca |
109 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| || |||||| ||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
38379873 |
agaagaagtccaacaacgaaagctcaaacacactccaccctcaattgcagcaagctgttttttcaatttctctttttcaagcaagtaaactttcatcaca |
38379972 |
T |
|
| Q |
110 |
tcagcgacaacattatctctagaaagagattgagcctcattaaaagaagcaaatttggtaaatgccctaaattcatcc-------caaactgaaatggaa |
202 |
Q |
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||| ||||| || |||||||||| ||||||||||||| || ||| ||||||| || ||| ||||||||||| || || || ||||||||| |
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| T |
38379973 |
tcattagcaacaccatatctagaaagaaattgagcctcattgaacgaaacaaatttagtgaattccctaaattcaccccactcaacagaccgaaatggaa |
38380072 |
T |
|
| Q |
203 |
tgtaactttttatattcatttgagtaaccgaatcacgaaccatcctatgatcaattttgttgagcttgaaatgtttggcaatacgagatttcataatcaa |
302 |
Q |
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| | |||||||| |||||||||||| || ||||||||||||||||||||||| || |||||||||||||| | |||||||||||||||||||| ||| |
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| T |
38380073 |
gatgattttttatagtcatttgagtaattgattcacgaaccatcctatgatcaatctttttgagcttgaaatgctcggcaatacgagatttcataaccaa |
38380172 |
T |
|
| Q |
303 |
aggacatttggtaatatgttggacttggtttagatgagatatacctgtccttc---cagaaataaactgtttcccacaagttttacattcacacagttct |
399 |
Q |
| |
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||||||| || |||||| | ||||||||||||| |||||| ||||| || || ||||| | |||||||||| |||||||||||| |||| |
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| T |
38380173 |
aggacatacgggaatatg------taggtttagatgagagttacctgaccttccatcacaagtaaacactctcccacaagtcatacattcacacatttct |
38380266 |
T |
|
| Q |
400 |
ttaccatctgcttcaattttaacaaagtagttcca |
434 |
Q |
| |
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|| |||||| | || ||| |||||||||||||| |
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| T |
38380267 |
tttccatctttatgaactttgacaaagtagttcca |
38380301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 325
Target Start/End: Original strand, 38374710 - 38375022
Alignment:
| Q |
11 |
gaagaagtccaacaatgaaagctcaaacacactccacccttaactgcagccagctgttttttcaatttatccttttcaagcaagtaaactttcatcacat |
110 |
Q |
| |
|
||||||||||||||| |||| |||||||||| || ||| | | | |||| ||||||||||||| |||||| |||| ||||||||||||||||||||||| |
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| T |
38374710 |
gaagaagtccaacaacgaaaactcaaacacattctaccttctattccagctagctgttttttcagtttatctttttgaagcaagtaaactttcatcacat |
38374809 |
T |
|
| Q |
111 |
cagcgacaacattatctctagaaagagattgagcctcattaaaagaagcaaatttggtaaatgccctaaattcatcc-------caaactgaaatggaat |
203 |
Q |
| |
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|| | ||| | || ||| || ||| |||||||||||||| |||| |||||||||| ||||||||||||| |||| |||| |||||||||| |
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| T |
38374810 |
catcagcaagaccatatctggatagaaattgagcctcattatcagaaacaaatttggtgaatgccctaaatttatcccactcaacaaagtgaaatggaag |
38374909 |
T |
|
| Q |
204 |
gtaactttttatattcatttgagtaaccgaatcacgaaccatcctatgatcaattttgttgagcttgaaatgtttggcaatacgagatttcataatcaaa |
303 |
Q |
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| ||||||| |||||||||| | ||| ||||||||||| ||||| ||||||| ||| | | ||||||| |||||||||||||||| |
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| T |
38374910 |
acgatgttttatagtcatttgagtcatcgattcacgaaccatgttatga---------ttgagctcgaagtactcagcaatacaagatttcataatcaaa |
38375000 |
T |
|
| Q |
304 |
ggacatttggtaatatgttgga |
325 |
Q |
| |
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|||||||||| ||||||||||| |
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|
| T |
38375001 |
ggacatttgggaatatgttgga |
38375022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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