View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21549_low_4 (Length: 443)

Name: NF21549_low_4
Description: NF21549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21549_low_4
NF21549_low_4
[»] chr6 (3 HSPs)
chr6 (10-426)||(9975161-9975581)
chr6 (13-75)||(67268-67330)
chr6 (10-76)||(5161233-5161299)
[»] chr2 (2 HSPs)
chr2 (10-74)||(37599768-37599832)
chr2 (20-76)||(10498760-10498816)
[»] chr4 (5 HSPs)
chr4 (10-76)||(20526672-20526738)
chr4 (10-76)||(35765188-35765253)
chr4 (10-76)||(13216466-13216532)
chr4 (10-76)||(24571812-24571878)
chr4 (10-74)||(45538130-45538194)
[»] chr8 (4 HSPs)
chr8 (10-72)||(72540-72602)
chr8 (10-75)||(31235921-31235986)
chr8 (10-76)||(16859668-16859734)
chr8 (10-76)||(37044460-37044526)
[»] chr5 (7 HSPs)
chr5 (10-76)||(22229480-22229546)
chr5 (10-76)||(30335562-30335628)
chr5 (163-213)||(41989976-41990026)
chr5 (10-74)||(30485373-30485437)
chr5 (10-76)||(29456619-29456686)
chr5 (10-69)||(32868301-32868360)
chr5 (10-76)||(41047362-41047429)
[»] chr3 (4 HSPs)
chr3 (10-76)||(43426764-43426830)
chr3 (8-72)||(25203138-25203202)
chr3 (30-76)||(25735160-25735206)
chr3 (170-213)||(1218841-1218884)
[»] scaffold0042 (1 HSPs)
scaffold0042 (10-75)||(93892-93957)
[»] chr7 (1 HSPs)
chr7 (10-76)||(5467371-5467437)
[»] chr1 (4 HSPs)
chr1 (30-74)||(14230180-14230224)
chr1 (12-75)||(47508880-47508943)
chr1 (12-65)||(36430010-36430063)
chr1 (10-75)||(44942611-44942676)


Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 10 - 426
Target Start/End: Complemental strand, 9975581 - 9975161
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaatatttactcaaaatgaaacgaaattacatcagcaa 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9975581 ataatactaaatttcataaaaagttatactaaatatatttgtagaaaccaaaattacagagaaaatatttactcaaaatgaaacgaaattacatcagcaa 9975482  T
Q  110 aaatggtccaaatctcagaacgaaagactaatgaaaataaaaacagatacattaatttttagatgcaatgttttttcgaaaatgaaaatccacatagaac 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||    
T  9975481 aaatggtccaaatctcagaacgaaagactaatgaaaataaaaacagatacataaatttttagatgcaatgttttttctaaaatgaaaattcacatagaac 9975382  T
Q  210 atttctagatgaacatca----aatactagaacaattgtgaatgctcaccgtgtacaagagctgtgaaggagaagtaggtgaacaaagctgaagatgttg 305  Q
    ||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9975381 atttctagatgaacatcaaataaatactagaacaattgtgaatgctcaccgtgtacaagagctgtgaaggagaagtaggtgaacaaagctgaagatgttg 9975282  T
Q  306 tatcgtgttgaaagaaaagagccaagctgaagatgttttaagtagtggttaagttttcctctaagagtttgcaccacccatttaattcaatttaatcttg 405  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9975281 tatcgtgttgaaagaaaagagccaagctgaagatgtattaagtagtggttaagttttcctctaagagtttgcaccacccatttaattcaatttaatcttg 9975182  T
Q  406 aaactctagcaccgtccattt 426  Q
    |||||||||||||||||||||    
T  9975181 aaactctagcaccgtccattt 9975161  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 75
Target Start/End: Complemental strand, 67330 - 67268
Alignment:
Q  13 atactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaat 75  Q
    ||||||||||| |||| || ||||| |||| ||| ||| ||||||||||||||||||||||||    
T  67330 atactaaatttaataagaaattatattaaaaatagttgaagcaaccaaaattacaaagaaaat 67268  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 5161299 - 5161233
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaata 76  Q
    ||||||||| |||| |||| |||||||| |||| ||  |||| ||||| ||||||||||||||||||    
T  5161299 ataatactatatttaataagaagttatattaaaaatggttgtggcaactaaaattacaaagaaaata 5161233  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 37599832 - 37599768
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaa 74  Q
    |||||||||||||| |||| |||||||| |||| ||| |||||||||||||||||||||||||||    
T  37599832 ataatactaaatttaataagaagttatattaaaaataattgtagcaaccaaaattacaaagaaaa 37599768  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 10498816 - 10498760
Alignment:
Q  20 atttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaata 76  Q
    |||| ||||||||||||| |||| ||| |||||||||| ||||||| ||||||||||    
T  10498816 atttaataaaaagttatattaaaaatagttgtagcaacgaaaattataaagaaaata 10498760  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 20526738 - 20526672
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaata 76  Q
    |||||||||||||| |||| |||||||| |||| ||  |||||||||||||||||||||||||||||    
T  20526738 ataatactaaatttaataagaagttatattaaaaatggttgtagcaaccaaaattacaaagaaaata 20526672  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 35765188 - 35765253
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaata 76  Q
    |||||| ||||||| |||| |||||||| |||| ||| |||||||||||||||||||||||||||||    
T  35765188 ataatattaaatttaataagaagttatattaaa-atagttgtagcaaccaaaattacaaagaaaata 35765253  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 13216466 - 13216532
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaata 76  Q
    |||||| ||||||| |||| |||||||| |||| ||| |||||||||||||||||||  ||||||||    
T  13216466 ataatattaaatttaataagaagttatattaaaaatagttgtagcaaccaaaattacttagaaaata 13216532  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 24571812 - 24571878
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaata 76  Q
    |||||| ||||||| |||| |||||||| |||| |||  |||||||| |||||||||||||||||||    
T  24571812 ataatattaaatttaataagaagttatattaaaaatagctgtagcaatcaaaattacaaagaaaata 24571878  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 45538130 - 45538194
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaa 74  Q
    |||||| ||||||  |||| |||||||| |||| ||| ||||||||||||||||| |||||||||    
T  45538130 ataatattaaattcaataagaagttatattaaaaatagttgtagcaaccaaaatttcaaagaaaa 45538194  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 72540 - 72602
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaa 72  Q
    |||||| ||||||| |||| |||||||| |||| ||| |||||||||||||||||||||||||    
T  72540 ataatattaaatttaataagaagttatattaaaaatagttgtagcaaccaaaattacaaagaa 72602  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 31235986 - 31235921
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaat 75  Q
    |||||| ||||| | |||| |||||||| |||| ||| ||||||||||||||||||||||||||||    
T  31235986 ataatagtaaatataataagaagttatattaaaaatagttgtagcaaccaaaattacaaagaaaat 31235921  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 16859668 - 16859734
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaata 76  Q
    |||||||||||||| |||| ||||||||  ||| ||| || || ||| |||||||||||||||||||    
T  16859668 ataatactaaatttaataagaagttatataaaaaatagttataacaagcaaaattacaaagaaaata 16859734  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 37044526 - 37044460
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaata 76  Q
    ||||||||| |||| |||| |||||||| |||| ||| |||||||||||||||  ||||| ||||||    
T  37044526 ataatactatatttaataagaagttatattaaaaatagttgtagcaaccaaaaccacaaataaaata 37044460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 22229546 - 22229480
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaata 76  Q
    |||||| ||||||| |||| |||||||| |||| ||| |||||||||||||||||| ||||||||||    
T  22229546 ataatattaaatttaataagaagttatattaaaaataattgtagcaaccaaaattataaagaaaata 22229480  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 30335628 - 30335562
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaata 76  Q
    |||||| ||||||| |||| ||| |||| |||| ||| ||||||||| |||||||||||||||||||    
T  30335628 ataatattaaatttaataagaagatatattaaaaatagttgtagcaatcaaaattacaaagaaaata 30335562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 41990026 - 41989976
Alignment:
Q  163 aatttttagatgcaatgttttttcgaaaatgaaaatccacatagaacattt 213  Q
    ||||| |||||||| ||||||||| |||||||||||||||| |||||||||    
T  41990026 aatttgtagatgcactgttttttctaaaatgaaaatccacacagaacattt 41989976  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 30485373 - 30485437
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaa 74  Q
    |||||| ||||||| |||| ||| |||| |||| ||| |||| ||||||||||||||||||||||    
T  30485373 ataatattaaatttgataagaagatatattaaaaatagttgttgcaaccaaaattacaaagaaaa 30485437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Complemental strand, 29456686 - 29456619
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaata-tatttgtagcaaccaaaattacaaagaaaata 76  Q
    ||||| |||||||| |||| |||||||| |||| | || ||||||||| |||||||||||||||||||    
T  29456686 ataattctaaatttaataagaagttatattaaaaaatagttgtagcaatcaaaattacaaagaaaata 29456619  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 32868301 - 32868360
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaa 69  Q
    |||| ||||||||| |||| || ||||| |||| ||| ||||||||||||||||||||||    
T  32868301 ataaaactaaatttaataagaaattatattaaaaataattgtagcaaccaaaattacaaa 32868360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 41047362 - 41047429
Alignment:
Q  10 ataatactaaatttcataaaaag-ttatactaaatatatttgtagcaaccaaaattacaaagaaaata 76  Q
    |||||||||||||| |||||||  ||||| | || ||| |||||||||||||||| ||||||||||||    
T  41047362 ataatactaaatttaataaaaaaattatattgaaaatagttgtagcaaccaaaataacaaagaaaata 41047429  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 43426764 - 43426830
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaata 76  Q
    |||||| ||||||| |||| |||||||| |||| ||| |||||| ||||||||||||||||||||||    
T  43426764 ataatattaaatttaataagaagttatattaaaaatagttgtagtaaccaaaattacaaagaaaata 43426830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 25203202 - 25203138
Alignment:
Q  8 agataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaa 72  Q
    |||||||||||||||| |||| |||||||| || | ||| |||||| ||||||||||||||||||    
T  25203202 agataatactaaatttaataagaagttatattagaaatagttgtagtaaccaaaattacaaagaa 25203138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 76
Target Start/End: Original strand, 25735160 - 25735206
Alignment:
Q  30 aagttatactaaatatatttgtagcaaccaaaattacaaagaaaata 76  Q
    |||||||| |||| ||| |||||||||||||||||||||||||||||    
T  25735160 aagttatattaaaaatagttgtagcaaccaaaattacaaagaaaata 25735206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 213
Target Start/End: Original strand, 1218841 - 1218884
Alignment:
Q  170 agatgcaatgttttttcgaaaatgaaaatccacatagaacattt 213  Q
    ||||||| ||||||||| |||||||||||||||| |||||||||    
T  1218841 agatgcactgttttttctaaaatgaaaatccacacagaacattt 1218884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 75
Target Start/End: Original strand, 93892 - 93957
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaat 75  Q
    |||||| ||||||| |||| |||||||| |||| ||| ||||||||||||||| ||||||||||||    
T  93892 ataataataaatttaataagaagttatattaaaaatagttgtagcaaccaaaactacaaagaaaat 93957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 5467371 - 5467437
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaata 76  Q
    |||||| ||||||| ||||||| ||||| |||| ||| || || |||||||||||||||||||||||    
T  5467371 ataatattaaatttaataaaaaattatattaaaaatagttataacaaccaaaattacaaagaaaata 5467437  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 14230224 - 14230180
Alignment:
Q  30 aagttatactaaatatatttgtagcaaccaaaattacaaagaaaa 74  Q
    |||||| |||||| ||| |||||||||||||||||||||||||||    
T  14230224 aagttaaactaaaaatagttgtagcaaccaaaattacaaagaaaa 14230180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 47508880 - 47508943
Alignment:
Q  12 aatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaat 75  Q
    |||| ||||||  |||| |||||| |||||| ||||| ||||||||||||||||| ||||||||    
T  47508880 aatattaaattcaataagaagttacactaaaaatattcgtagcaaccaaaattactaagaaaat 47508943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 65
Target Start/End: Original strand, 36430010 - 36430063
Alignment:
Q  12 aatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaatta 65  Q
    |||||||||||| |||| || ||||| |||| ||| ||||||||||||||||||    
T  36430010 aatactaaatttaataagaaattatattaaaaatagttgtagcaaccaaaatta 36430063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 75
Target Start/End: Complemental strand, 44942676 - 44942611
Alignment:
Q  10 ataatactaaatttcataaaaagttatactaaatatatttgtagcaaccaaaattacaaagaaaat 75  Q
    ||||||| |||||| |||| |||||||| ||||  |  ||||||||||||||||||||||| ||||    
T  44942676 ataatacaaaatttaataagaagttatattaaaagtggttgtagcaaccaaaattacaaagcaaat 44942611  T

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