View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21549_low_5 (Length: 426)
Name: NF21549_low_5
Description: NF21549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21549_low_5 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Original strand, 11983225 - 11983645
Alignment:
| Q |
1 |
gaaggaaagttgaagcttattcatggcaccaggaaaatcaatattccatctcatattttatatgcagatgacatgatgattttttgcaaaggaacgaatt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11983225 |
gaaggaaagttgaagcttattcatggcaccaggaagatcaatattccatctcatattttatatgcagatgacatgatgattttttgcaaaggaacgaatt |
11983324 |
T |
|
| Q |
101 |
ccaacatcaaagctcttaaggatgtctacttgaagtatgtagaatcttctggtcaaatggaaaatcctcagaaatcttcaatttatgcaggctcaatcac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11983325 |
ccaacatcaaagctcttaaggatgtctacttgaagtatgtagaatcttctggtcaaatggaaaatcctcagaaatcttcaatttatgcaggctcaatcac |
11983424 |
T |
|
| Q |
201 |
tagtcatagattgtctcaggtatctcatcaacttggttttagcattggcactctaccatttcaatatctaggagttccaattttcagagaaaaaccaaaa |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
11983425 |
cagtcatagattgtctcaggtatctcatcaacttggttttagcattggcactctaccatttcaatatctaggagttccaattttcagaggcaaaccaaaa |
11983524 |
T |
|
| Q |
301 |
tatgtttattttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtgcaattaatcaaga |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11983525 |
tatgtttattttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtgcaattaatcaaga |
11983624 |
T |
|
| Q |
401 |
gtgttgttcaaagtatgcttc |
421 |
Q |
| |
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||||||||||||||||||||| |
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| T |
11983625 |
gtgttgttcaaagtatgcttc |
11983645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 419
Target Start/End: Original strand, 23496009 - 23496121
Alignment:
| Q |
307 |
tattttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtgcaattaatcaagagtgttg |
406 |
Q |
| |
|
||||||||| |||||| |||||||| ||| ||||| ||||||||||||| || |||||| | ||||| |||||||||||| | || |||||||| | |
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| T |
23496009 |
tattttcaacctattggggataaagtaaaactgaagctcgcagcttggaaagcctctcttctcaccatggcaggtagagtgcaacttataaagagtgtgg |
23496108 |
T |
|
| Q |
407 |
ttcaaagtatgct |
419 |
Q |
| |
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|||| || ||||| |
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|
| T |
23496109 |
ttcagagcatgct |
23496121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 268 - 421
Target Start/End: Complemental strand, 26450225 - 26450072
Alignment:
| Q |
268 |
ctaggagttccaattttcagagaaaaaccaaaatatgtttattttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttc |
367 |
Q |
| |
|
||||| ||||||||||| |||| || |||||||| || |||||||| || |||| || ||||| ||||| ||||| |||||||||||||||||||||| |
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| T |
26450225 |
ctaggtgttccaatttttagaggcaagccaaaatacattcattttcaacctcttgcagacaaagtaaaaagtaagctctcagcttggaaagcatcccttc |
26450126 |
T |
|
| Q |
368 |
tctcaatggctggtagagtgcaattaatcaagagtgttgttcaaagtatgcttc |
421 |
Q |
| |
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|||| || || ||||||||| | ||| | || ||||| |||||||||||||||| |
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|
| T |
26450125 |
tctctattgcaggtagagtgtagttagtgaaaagtgtagttcaaagtatgcttc |
26450072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 307 - 421
Target Start/End: Original strand, 16182269 - 16182383
Alignment:
| Q |
307 |
tattttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtgcaattaatcaagagtgttg |
406 |
Q |
| |
|
||||||||| || ||||||||||||| |||| ||||| || ||||||||||| || ||| | || |||||||||| ||||||||||||||||||||| | |
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|
| T |
16182269 |
tattttcaaccttttgctgataaagtaaaaaataagctatctgcttggaaagcttcacttttatctatggctggtaaagtgcaattaatcaagagtgtgg |
16182368 |
T |
|
| Q |
407 |
ttcaaagtatgcttc |
421 |
Q |
| |
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| |||| ||||||| |
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| T |
16182369 |
tacaaaacatgcttc |
16182383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 296 - 421
Target Start/End: Complemental strand, 5151790 - 5151665
Alignment:
| Q |
296 |
caaaatatgtttattttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtgcaattaat |
395 |
Q |
| |
|
|||| |||| |||||||||| || ||||||||||||| ||||| ||||| ||||||||||||||||| ||||| || || |||||||||||||||| | |
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|
| T |
5151790 |
caaagtatgcttattttcaacctcttgctgataaagttaaaagcaagctctcagcttggaaagcatctcttctatccattattggtagagtgcaattagt |
5151691 |
T |
|
| Q |
396 |
caagagtgttgttcaaagtatgcttc |
421 |
Q |
| |
|
|||||||| ||||||||||||||| |
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| T |
5151690 |
aaagagtgtaattcaaagtatgcttc |
5151665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 307 - 419
Target Start/End: Original strand, 12303393 - 12303505
Alignment:
| Q |
307 |
tattttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtgcaattaatcaagagtgttg |
406 |
Q |
| |
|
||||||||| ||||||| |||||||| ||| |||||| | ||||||||||| || |||||||| ||||| || ||||||||||||||||||||||| | |
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|
| T |
12303393 |
tattttcaacctattgcggataaagtaaaagtaaagctggctgcttggaaagcttcacttctctccatggcaggaagagtgcaattaatcaagagtgtgg |
12303492 |
T |
|
| Q |
407 |
ttcaaagtatgct |
419 |
Q |
| |
|
| ||||| ||||| |
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|
| T |
12303493 |
tgcaaagcatgct |
12303505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 404
Target Start/End: Complemental strand, 25271450 - 25271353
Alignment:
| Q |
307 |
tattttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtgcaattaatcaagagtgt |
404 |
Q |
| |
|
||||||||| | |||||||||||||| ||| |||||| ||||||||||||| || || ||| | ||||| |||||| |||| |||| |||||||| |
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|
| T |
25271450 |
tattttcaaccaattgctgataaagtaaaattgaagcttgcagcttggaaagcctctctcctcaccatggcaggtagattgcagctaattaagagtgt |
25271353 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 307 - 419
Target Start/End: Complemental strand, 36550 - 36438
Alignment:
| Q |
307 |
tattttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtgcaattaatcaagagtgttg |
406 |
Q |
| |
|
||||||||| ||||||| |||||||| ||| |||||| | ||||||||||| || |||||||| ||||| || ||||||||||||||||||||||| | |
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|
| T |
36550 |
tattttcaacctattgcggataaagtaaaagtaaagctggctgcttggaaagcttcacttctctccatggcaggaagagtgcaattaatcaagagtgtgg |
36451 |
T |
|
| Q |
407 |
ttcaaagtatgct |
419 |
Q |
| |
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| ||||| ||||| |
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|
| T |
36450 |
tgcaaagcatgct |
36438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 232 - 387
Target Start/End: Original strand, 38358925 - 38359073
Alignment:
| Q |
232 |
cttggttttagcattggcactctaccatttcaatatctaggagttccaattttcagagaaaaaccaaaatatgtttattttcaagctattgctgataaag |
331 |
Q |
| |
|
|||||||||| ||||||| ||| |||||| ||||| |||||||||||||||| || || || |||||||| ||| |||||||||||||| |
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|
| T |
38358925 |
cttggttttaacattggctttcttccatttacttatcttggagttccaattttcaaaggcaagcccaaatatgt-------caacctattgctgataaaa |
38359017 |
T |
|
| Q |
332 |
tcaaaagaaagctttcagcttggaaagcatcccttctctcaatggctggtagagtg |
387 |
Q |
| |
|
|||| | ||||| |||||||||||||||||||||| ||| | |||||||||||| |
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|
| T |
38359018 |
tcaagaataagctagcagcttggaaagcatcccttctatcagttgctggtagagtg |
38359073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 371
Target Start/End: Original strand, 19572982 - 19573045
Alignment:
| Q |
308 |
attttcaagctattgctgataaagtcaaaagaaagctttcagcttggaaagcatcccttctctc |
371 |
Q |
| |
|
|||||||| || |||| |||||||| ||||| ||||| ||| |||||||| ||||||||||||| |
|
|
| T |
19572982 |
attttcaacctcttgcagataaagtaaaaagtaagctctcatcttggaaaacatcccttctctc |
19573045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 20717788 - 20717668
Alignment:
| Q |
7 |
aagttgaagcttattcatggcaccaggaaaatcaatattccatctcatattttatatgcagatgacatgatgattttttgcaaaggaacgaattccaaca |
106 |
Q |
| |
|
||||||||| | || ||||| || ||| | ||||||||||| || ||||| || |||| ||||| ||||||||||||| || ||| || || || | || |
|
|
| T |
20717788 |
aagttgaagttgatgcatggtactagggacatcaatattccttcacatatcttgtatgttgatgatatgatgatttttttcagaggcacaaactctatca |
20717689 |
T |
|
| Q |
107 |
tcaaagctcttaaggatgtct |
127 |
Q |
| |
|
|||| ||||||||| |||||| |
|
|
| T |
20717688 |
tcaatgctcttaagaatgtct |
20717668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 127
Target Start/End: Complemental strand, 20719835 - 20719715
Alignment:
| Q |
7 |
aagttgaagcttattcatggcaccaggaaaatcaatattccatctcatattttatatgcagatgacatgatgattttttgcaaaggaacgaattccaaca |
106 |
Q |
| |
|
||||||||| | || ||||| || ||| | ||||||||||| || ||||| || |||| ||||| ||||||||||||| || ||| || || || | || |
|
|
| T |
20719835 |
aagttgaagttgatgcatggtactagggacatcaatattccttcacatatcttgtatgttgatgatatgatgatttttttcagaggcacaaactctatca |
20719736 |
T |
|
| Q |
107 |
tcaaagctcttaaggatgtct |
127 |
Q |
| |
|
|||| ||||||||| |||||| |
|
|
| T |
20719735 |
tcaatgctcttaagaatgtct |
20719715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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