View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21549_low_6 (Length: 418)
Name: NF21549_low_6
Description: NF21549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21549_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 182 - 401
Target Start/End: Complemental strand, 37069350 - 37069133
Alignment:
| Q |
182 |
gtttgtttctatttatttcgataaataccgtgtgcaacactcgcaaggcaagtcgttgtattttactttgtatagaaagattaaataaactcacaaaact |
281 |
Q |
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| T |
37069350 |
gtttgtttctatttatttccataaatactgtgtgcaacactcgcaaggcaagtcgttgtattttactttgtatagaaagattaaataaactcacaaaact |
37069251 |
T |
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| Q |
282 |
cttgtccaattttgaggattgaaacttagacagaaccatgaaaacctcagaaacatttgttcttgaattgaggtcatgagcggtacatattttggcaatc |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37069250 |
cttgtccaattttgaggattgaaacttagacagaaccatgaaaacctc--aaacatttgttcttgaattgaggtcatgagcggtacatattttggcaatc |
37069153 |
T |
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| Q |
382 |
tcagccatagaataagtaag |
401 |
Q |
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|||||||||||||||||||| |
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| T |
37069152 |
tcagccatagaataagtaag |
37069133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 37069521 - 37069401
Alignment:
| Q |
11 |
cacagagtaaattggatcctctgcaatggctacagagatatttgattatgtatcataactagatgggtattctacattaaattaaataaaccccacttaa |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37069521 |
cacagagtaaattggatcctctgcaatggctacagagatatttgattatgtatcataactagatgggtattctacattaaattaaataaaccccacttaa |
37069422 |
T |
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| Q |
111 |
atttatgttcctcttgtgacc |
131 |
Q |
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||||||||||||||||||||| |
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| T |
37069421 |
atttatgttcctcttgtgacc |
37069401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 37079256 - 37079154
Alignment:
| Q |
26 |
atcctctgcaatggctacagagatatttgattatgtatcataactagatgggtattctacattaaattaaataaaccccacttaa-atttatgttcctct |
124 |
Q |
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| T |
37079256 |
atcctctgcaatggctacacatatatttgattaagtatcataactaggtggggattctacatcaaattaaataaaccccactaaatatttatgttcctct |
37079157 |
T |
|
| Q |
125 |
tgt |
127 |
Q |
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||| |
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| T |
37079156 |
tgt |
37079154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 37066076 - 37065975
Alignment:
| Q |
15 |
gagtaaattggatcctctgcaatggctacagagatatttgattatgtatcataactagatgggtattctacattaaattaaataaaccccacttaaattt |
114 |
Q |
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||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||| |||| ||||| |||||||||||||||| || ||||||||| |
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| T |
37066076 |
gagtaaattggatcctctgcaatagctacacatatatttgattatgtatcataactaggtggggattctgcattaaattaaataaaaccagcttaaattt |
37065977 |
T |
|
| Q |
115 |
at |
116 |
Q |
| |
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|| |
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|
| T |
37065976 |
at |
37065975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 401
Target Start/End: Complemental strand, 37065070 - 37064956
Alignment:
| Q |
288 |
caattttgaggattgaaacttagacagaaccatgaaaacctc-agaaacatttgttcttgaattgaggtcatgagcggtacatattttggcaatctcagc |
386 |
Q |
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|||| |||||||||||| | | |||| ||||||||||||| | |||||||||||| |||||||||||||||||| | |||| |||||||||||||| | |
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| T |
37065070 |
caatattgaggattgaatcgtggacataaccatgaaaacccccagaaacatttgtccttgaattgaggtcatgatcaacacatcttttggcaatctcatc |
37064971 |
T |
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| Q |
387 |
catagaataagtaag |
401 |
Q |
| |
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||||||||||||||| |
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|
| T |
37064970 |
catagaataagtaag |
37064956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 389
Target Start/End: Complemental strand, 37062762 - 37062659
Alignment:
| Q |
286 |
tccaattttgaggattgaaacttagacagaaccatgaaaacctcagaaacatttgttcttgaattgaggtcatgagcggtacatattttggcaatctcag |
385 |
Q |
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|||||| | |||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| || ||| |||| |||| |||| |||||||||| |
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| T |
37062762 |
tccaatgtagaggattgaatcttagacagaatcatgaaaacctcagaaacatttggtcttgaattaagatcacgagcaacacatcttttagcaatctcag |
37062663 |
T |
|
| Q |
386 |
ccat |
389 |
Q |
| |
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|||| |
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| T |
37062662 |
ccat |
37062659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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