View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2154_low_3 (Length: 359)
Name: NF2154_low_3
Description: NF2154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2154_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 25 - 258
Target Start/End: Complemental strand, 6801160 - 6800927
Alignment:
| Q |
25 |
caatcctcccattttcaccaccaactccgctccgtcataaacaatgaaagctgctgttaagggaaagtacgacaatgacaaaaacgccgccgccgcagcc |
124 |
Q |
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| T |
6801160 |
caatcctcccattttcacaaccaactccgctccgtcataaacaatgaaagctgctgttaagggaaaatacgacaatgacaaaaacgcggccgccgcagcc |
6801061 |
T |
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| Q |
125 |
tccgtcgccttcaacgccggtgatgtcaaactccgagcatcaataaccgacgctactttcatcaacggcccaagcttaaccggtctagtcctcgccgtag |
224 |
Q |
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| T |
6801060 |
tccgtcgccttcaacgccggtgacgtcaaactccgagcatcaataaccgacgctactttcatcaacggcccaagcttaaccggtctagtcctcgccgtag |
6800961 |
T |
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| Q |
225 |
aaaaacccggttccttcagtatcgactacaacgt |
258 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6800960 |
aaaaacccggttccttcagtatcgactacaacgt |
6800927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 302 - 338
Target Start/End: Complemental strand, 6800890 - 6800854
Alignment:
| Q |
302 |
cgttcaatccattttctaaaccaaaccggttcggttt |
338 |
Q |
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| T |
6800890 |
cgttcaatccattttctaaaccaaaccggttcggttt |
6800854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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