View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2154_low_4 (Length: 246)

Name: NF2154_low_4
Description: NF2154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2154_low_4
NF2154_low_4
[»] chr3 (2 HSPs)
chr3 (18-204)||(41097868-41098054)
chr3 (29-61)||(47769454-47769486)
[»] chr4 (2 HSPs)
chr4 (22-61)||(42497811-42497850)
chr4 (28-64)||(51515754-51515790)
[»] chr2 (1 HSPs)
chr2 (40-114)||(37129837-37129911)
[»] chr1 (1 HSPs)
chr1 (23-61)||(25563349-25563387)
[»] chr8 (1 HSPs)
chr8 (168-204)||(8885227-8885263)
[»] chr6 (1 HSPs)
chr6 (22-62)||(236979-237019)


Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 41098054 - 41097868
Alignment:
Q  18 catactaaccctcatcattttattttaggtcattgttagttgtttccgccgtgccccagtcaaaaacttaattttcagactatttgatctgattgcttct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| |||||    
T  41098054 catactaaccctcatcattttattttaggtcattgttagttgtttccgccgtgccccagtcgaaaactcaattttcagactatttgatcagatttcttct 41097955  T
Q  118 aaatctacccaaaagatgaggagaaaaaatcaattcgaaacttcgtaccccaaaatccaaaattgcatcatttaaacccatttttca 204  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  41097954 aaatctgcccaaaagatgaggagaaaaaatcaatttgaaacttcgtaccccaaaatccaaaactgcatcatttaaacccatttttca 41097868  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 47769454 - 47769486
Alignment:
Q  29 tcatcattttattttaggtcattgttagttgtt 61  Q
    |||||||| ||||||||||||||||||||||||    
T  47769454 tcatcattctattttaggtcattgttagttgtt 47769486  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 42497850 - 42497811
Alignment:
Q  22 ctaaccctcatcattttattttaggtcattgttagttgtt 61  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  42497850 ctaactctcatcattttgttttaggtcattgttagttgtt 42497811  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 51515754 - 51515790
Alignment:
Q  28 ctcatcattttattttaggtcattgttagttgtttcc 64  Q
    |||||| |||| |||||||||||||||||||||||||    
T  51515754 ctcatccttttgttttaggtcattgttagttgtttcc 51515790  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 114
Target Start/End: Original strand, 37129837 - 37129911
Alignment:
Q  40 ttttaggtcattgttagttgtttccgccgtgccccagtcaaaaacttaattttcagactatttgatctgattgct 114  Q
    |||||||||||||||||||||| |||  | | || |||||||||   ||||||||| |||||||||| |||||||    
T  37129837 ttttaggtcattgttagttgttcccgtagagtcctagtcaaaaatccaattttcagtctatttgatcggattgct 37129911  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 25563387 - 25563349
Alignment:
Q  23 taaccctcatcattttattttaggtcattgttagttgtt 61  Q
    ||||||||||| |||| ||||||||||||||||||||||    
T  25563387 taaccctcatccttttgttttaggtcattgttagttgtt 25563349  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 8885263 - 8885227
Alignment:
Q  168 caaaatccaaaattgcatcatttaaacccatttttca 204  Q
    |||||||||||||| ||||||||| ||||||||||||    
T  8885263 caaaatccaaaattccatcatttagacccatttttca 8885227  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 236979 - 237019
Alignment:
Q  22 ctaaccctcatcattttattttaggtcattgttagttgttt 62  Q
    ||||| |||||| || |||||||||||||||||||||||||    
T  236979 ctaactctcatcgttctattttaggtcattgttagttgttt 237019  T

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