View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21550_high_1 (Length: 756)

Name: NF21550_high_1
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21550_high_1
NF21550_high_1
[»] chr8 (16 HSPs)
chr8 (1-568)||(2432018-2432585)
chr8 (585-740)||(2431499-2431654)
chr8 (1-131)||(2516409-2516539)
chr8 (1-131)||(2429473-2429603)
chr8 (1-131)||(2435816-2435946)
chr8 (411-556)||(2435465-2435609)
chr8 (585-733)||(2434891-2435044)
chr8 (411-553)||(1459408-1459551)
chr8 (411-553)||(2429115-2429258)
chr8 (1-116)||(2496836-2496951)
chr8 (1-116)||(2512138-2512253)
chr8 (460-547)||(2516645-2516732)
chr8 (460-547)||(2505711-2505798)
chr8 (460-547)||(2512369-2512456)
chr8 (461-547)||(2497093-2497179)
chr8 (1-121)||(2505517-2505637)


Alignment Details
Target: chr8 (Bit Score: 536; Significance: 0; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 1 - 568
Target Start/End: Complemental strand, 2432585 - 2432018
Alignment:
Q  1 cattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2432585 cattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttct 2432486  T
Q  101 ggaaagtacctaatttacatacattgatatcaatatcaactactcattagtgtgtctcatgtttctaagcgtagtaagtagtaactatgaagcaccgaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2432485 ggaaagtacctaatttacatacattgatatcaatatcaactactcattagtgtgtctcatgtttctaagcgtagtaagtagtaactatgaagcaccgaca 2432386  T
Q  201 cagattgatactaacactgatgcatagacatggcaataatttggaaaaatagaagtgagtagtgactgtatgtatttgtaagtgactgtgttgtgctggt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2432385 cagattgatactaacactgatgcatagacatggcaataatttggaaaaatagaagtgagtagtgactgtatgtatttgtaagtgactgtgttgtgctggt 2432286  T
Q  301 gtaggacacaccttcaatataacttgtcgatataacatgtcgatgctacagcatgtgtaggacacaccttcaatattacgcgtcgatgttacataggtaa 400  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2432285 gtaggacacaccttcaatataatgtgtcgatataacatgtcgatgctacagcatgtgtaggacacaccttcaatataacgcgtcgatgttacataggtaa 2432186  T
Q  401 ctacaatttgtgtcaataaaaaatttgattcaaaatctggcataaaattgttaataacagacctttttaaagctgcattgaggtcatgttcttctttgta 500  Q
    |||||||||| ||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2432185 ctacaatttgcgtcaataaaaaatttgattaaaattctgccataaaattgttaataacagacctttttaaagctgcattgaggtcaggttcttctttgta 2432086  T
Q  501 gttaaatgcttcatcatatccaaatttattcttcaaaagatccaccttgtgtgccataattcagttca 568  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2432085 gttaaatgcttcatcatatccaaatttattcttcaaaagatccaccttgtgtgccataattcagttca 2432018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 585 - 740
Target Start/End: Complemental strand, 2431654 - 2431499
Alignment:
Q  585 ctcaaacaaaagcatgaaatatgtcaaaaatacacaacaaaatggaagaaaactacgcgactaatatcaatataaattaaaattgttgaacgcatatacc 684  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  2431654 ctcaaacaaaagcatgaaatatgtcaaaaatacacaacaaaatggaagaaaactacgcgattaatatcaatataaattgaaattgttgaacgcatatacc 2431555  T
Q  685 aagaatcccgatgtaataggaaagtgggacatcattgtgctcaattttgtacattc 740  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2431554 aagaatcccgatgtaataggaaagtgggacatcattgtgctcaattttgtacattc 2431499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 2516409 - 2516539
Alignment:
Q  1 cattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttct 100  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2516409 cattccacacacaggtatgcggccatggagtttcatattcaagagtacagcatcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttct 2516508  T
Q  101 ggaaagtacctaatttacatacattgatatc 131  Q
    ||||||||||||||||||||| |||||||||    
T  2516509 ggaaagtacctaatttacataaattgatatc 2516539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 2429603 - 2429473
Alignment:
Q  1 cattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttct 100  Q
    ||||||||  |||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2429603 cattccacacacaggtatccgcccatggagtttcatattcaagagtacagcatcaagtgtctttccccccacattctcaaagtaaatgtcaatgccttct 2429504  T
Q  101 ggaaagtacctaatttacatacattgatatc 131  Q
    |||||||| ||| |||||||| |||||||||    
T  2429503 ggaaagtatctagtttacataaattgatatc 2429473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 2435946 - 2435816
Alignment:
Q  1 cattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttct 100  Q
    ||||||||||||||||||||||||||||| | |||||||||| |||||||| |||||||| || || |||||||||||||||||||||||||||||||||    
T  2435946 cattccacttacaggtatgcggccatggactctcatattcaaaagtacagcatcaagtgttttcccaccaacattctcaaagtaaatgtcaatgccttct 2435847  T
Q  101 ggaaagtacctaatttacatacattgatatc 131  Q
    |||||||||||||| |||||| |||||||||    
T  2435846 ggaaagtacctaatatacataaattgatatc 2435816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 411 - 556
Target Start/End: Complemental strand, 2435609 - 2435465
Alignment:
Q  411 tgtcaataaaaaatttgattcaaaatctggcataaaattgttaataacagacctttttaaagctgcattgaggtcatgttcttctttgtagttaaatgct 510  Q
    |||||||||| || |||||| |||||||| ||||||| |||||| ||||||||||||||||| ||||||||||||  ||||||||||||||||||| |||    
T  2435609 tgtcaataaacaaattgatt-aaaatctgccataaaaatgttaaaaacagacctttttaaagttgcattgaggtctggttcttctttgtagttaaaggct 2435511  T
Q  511 tcatcatatccaaatttattcttcaaaagatccaccttgtgtgcca 556  Q
    |||||||||||||||||||||||||| ||||| |||| ||||||||    
T  2435510 tcatcatatccaaatttattcttcaacagatctacctagtgtgcca 2435465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 585 - 733
Target Start/End: Complemental strand, 2435044 - 2434891
Alignment:
Q  585 ctcaaacaaaagcatgaaa-tatgtcaaaaatacacaacaaaatggaagaaaactacgcgactaatatcaatataaattaaaattgttgaacgca----- 678  Q
    ||||||||||||| | ||| ||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||| |         
T  2435044 ctcaaacaaaagcgtaaaaatatgtcaaaaa-acacaacaaaatggaagaaaattgcgcgactaatatcaatataaattgaaattgttgaacggaacgcg 2434946  T
Q  679 tataccaagaatcccgatgtaataggaaagtgggacatcattgtgctcaattttg 733  Q
    | |||||||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  2434945 tgtaccaagaattccggtataataggaaagtgggacatcattgtgctcaattttg 2434891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 411 - 553
Target Start/End: Complemental strand, 1459551 - 1459408
Alignment:
Q  411 tgtcaataaa-aaatttgattcaaaatctggcataaaattgttaataacagacctttttaaagctgcattgaggtcatgttcttctttgtagttaaatgc 509  Q
    |||||||||| |||||  ||| |||||||  ||||||| |||||| |||||||||||| |||||||||||||||||  ||||||||||||||||||| ||    
T  1459551 tgtcaataaacaaattaaattaaaaatctaccataaaaatgttaaaaacagaccttttcaaagctgcattgaggtctggttcttctttgtagttaaaggc 1459452  T
Q  510 ttcatcatatccaaatttattcttcaaaagatccaccttgtgtg 553  Q
    ||||||||||||||||||||| ||||| | |||||||| |||||    
T  1459451 ttcatcatatccaaatttatttttcaacaaatccacctggtgtg 1459408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 411 - 553
Target Start/End: Complemental strand, 2429258 - 2429115
Alignment:
Q  411 tgtcaataaa-aaatttgattcaaaatctggcataaaattgttaataacagacctttttaaagctgcattgaggtcatgttcttctttgtagttaaatgc 509  Q
    |||||||||| |||||  ||| |||||||  ||||||| |||||| |||||||||||| |||||||||||||||||  ||||||||||||||||||| ||    
T  2429258 tgtcaataaacaaattaaattaaaaatctaccataaaaatgttaaaaacagaccttttcaaagctgcattgaggtctggttcttctttgtagttaaaggc 2429159  T
Q  510 ttcatcatatccaaatttattcttcaaaagatccaccttgtgtg 553  Q
    ||||||||||||||||||||| ||||| | |||||||| |||||    
T  2429158 ttcatcatatccaaatttatttttcaacaaatccacctggtgtg 2429115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 2496836 - 2496951
Alignment:
Q  1 cattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttct 100  Q
    |||||||| | ||||||||||||| |||| | |||| |||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||||||     
T  2496836 cattccacatgcaggtatgcggccgtggactctcatgttcaagagtacagcatcaagtgtcttgcctccaacattctcaaagtaaatatcaatgccttca 2496935  T
Q  101 ggaaagtacctaattt 116  Q
    || |||| ||| ||||    
T  2496936 gggaagtgcctgattt 2496951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 2512138 - 2512253
Alignment:
Q  1 cattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttct 100  Q
    ||||||||  ||||||||||| ||||| |||||||| ||||||||||| || ||||||||||| || ||||| ||||||||||||| |||||| ||||||    
T  2512138 cattccacacacaggtatgcgaccatgtagtttcatgttcaagagtacggcatcaagtgtcttgcctccaacgttctcaaagtaaacgtcaattccttct 2512237  T
Q  101 ggaaagtacctaattt 116  Q
    ||||||| ||| ||||    
T  2512238 ggaaagtgcctgattt 2512253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 460 - 547
Target Start/End: Original strand, 2516645 - 2516732
Alignment:
Q  460 gacctttttaaagctgcattgaggtcatgttcttctttgtagttaaatgcttcatcatatccaaatttattcttcaaaagatccacct 547  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||| || || | ||||||||    
T  2516645 gacctttttaatgctgcattgaggtcatgttcttctttgtagttaatggcttcatcgtatccaaatttattttttaacatatccacct 2516732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 460 - 547
Target Start/End: Original strand, 2505711 - 2505798
Alignment:
Q  460 gacctttttaaagctgcattgaggtcatgttcttctttgtagttaaatgcttcatcatatccaaatttattcttcaaaagatccacct 547  Q
    |||||||| || | |||||||||||| || ||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||||    
T  2505711 gaccttttcaatgttgcattgaggtcttgctcttctttgtagttaatggcttcatcgtatccaaatttattcttcaacagatccacct 2505798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 460 - 547
Target Start/End: Original strand, 2512369 - 2512456
Alignment:
Q  460 gacctttttaaagctgcattgaggtcatgttcttctttgtagttaaatgcttcatcatatccaaatttattcttcaaaagatccacct 547  Q
    |||||||| || |||||||  ||||| |||||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||||    
T  2512369 gaccttttcaatgctgcatccaggtcttgttcttctttgtagttaatggcttcatcgtatccaaatttattcttcaacagatccacct 2512456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 461 - 547
Target Start/End: Original strand, 2497093 - 2497179
Alignment:
Q  461 acctttttaaagctgcattgaggtcatgttcttctttgtagttaaatgcttcatcatatccaaatttattcttcaaaagatccacct 547  Q
    ||||||| |||||||||| ||||||| | ||||| |||||||| ||  || ||||| ||||||||||||||||||||||||||||||    
T  2497093 accttttcaaagctgcatcgaggtcaggctcttccttgtagttgaaacctccatcaaatccaaatttattcttcaaaagatccacct 2497179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 2505517 - 2505637
Alignment:
Q  1 cattccacttacaggtatgcggccatggagtttcatattcaagagtacagcgtcaagtgtctttcccccaacattctcaaagtaaatgtcaatgccttct 100  Q
    ||||||||  ||||||||||| || || | | |||| ||||||||||| || ||||||||||| || || || |||||||||||||  ||||||||||||    
T  2505517 cattccacacacaggtatgcgaccttgtaatctcatgttcaagagtacggcatcaagtgtcttgccaccgacgttctcaaagtaaacatcaatgccttct 2505616  T
Q  101 ggaaagtacctaatttacata 121  Q
    ||||||| ||| ||| |||||    
T  2505617 ggaaagtgcctgattcacata 2505637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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