View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21550_high_13 (Length: 298)

Name: NF21550_high_13
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21550_high_13
NF21550_high_13
[»] chr1 (1 HSPs)
chr1 (18-281)||(1717394-1717657)
[»] chr3 (18 HSPs)
chr3 (18-219)||(19812460-19812661)
chr3 (18-287)||(19849173-19849442)
chr3 (18-171)||(20036385-20036538)
chr3 (17-219)||(19818736-19818938)
chr3 (18-163)||(19956267-19956412)
chr3 (18-171)||(26653332-26653485)
chr3 (24-139)||(30914832-30914947)
chr3 (18-287)||(20015873-20016136)
chr3 (18-171)||(19838576-19838729)
chr3 (18-171)||(26647184-26647337)
chr3 (18-219)||(19951304-19951499)
chr3 (18-219)||(19989705-19989900)
chr3 (99-163)||(19832133-19832197)
chr3 (22-219)||(17114900-17115091)
chr3 (18-141)||(20046303-20046426)
chr3 (109-281)||(19858343-19858509)
chr3 (108-156)||(19943987-19944035)
chr3 (108-156)||(24839774-24839822)
[»] chr5 (2 HSPs)
chr5 (17-287)||(9815216-9815480)
chr5 (18-156)||(26354724-26354862)
[»] chr8 (3 HSPs)
chr8 (18-65)||(22651781-22651828)
chr8 (99-156)||(22689473-22689530)
chr8 (20-65)||(22685596-22685641)
[»] chr4 (1 HSPs)
chr4 (18-138)||(6397554-6397674)
[»] chr7 (1 HSPs)
chr7 (19-78)||(12581573-12581632)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 1717394 - 1717657
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717394 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 1717493  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtg 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1717494 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccacgatgaccaaccacggagaccctttttggtttaggtg 1717593  T
Q  218 gcgtatgagtaaagacttgaaaattgaagatgttaggttgacattagactcagctattgatgat 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1717594 gcgtatgagtaaagacttgaaaattgaagatgttaggttgacattagactcagctattgatgat 1717657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 7e-49; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 19812460 - 19812661
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||| ||||||| |||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| |   |||| ||| ||||||||||||||    
T  19812460 tataaagatttaagtttgtttaagaaaacaattgttgatttgtcaaaatatcctgttggtggtgatagatttcccttggagattactcttcaatcaccct 19812559  T
Q  118 tttacttggttcaaatttgggtgttggga-aggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggt 216  Q
    |||||||||||||||||||||| |||||| |||||||||| ||| ||| |||||| | |||| ||| ||| |||||| || |||||||||| ||||||||    
T  19812560 tttacttggttcaaatttgggt-ttgggagaggttcaaaaatttgcaaccacaacaacaaactatgttgatcaaccatggcgacccttttttgtttaggt 19812658  T
Q  217 ggc 219  Q
    |||    
T  19812659 ggc 19812661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 19849173 - 19849442
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||||||||||||||||||||||||||||||   || ||||||||||| || ||||||||| ||||||||| |   |||| ||| |||| |||||||||    
T  19849173 tataaggatttaactttgtttaagaaaacaatcactgatttgtcaaaatgtcatgttggtggtgatagatttcccttggagattactcttaaatcaccct 19849272  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtg 217  Q
    |||| ||||||||||||||||||| ||  |||||||||| ||| ||| |||| | | |||||||| |||||||||| || || ||||| | |||||| ||    
T  19849273 tttatttggttcaaatttgggtgtgggagaggttcaaaaatttgcaaccacagccacaaaccatgttgaccaaccatggggatcctttattgtttagatg 19849372  T
Q  218 gcgtatgagtaaagacttgaaaattgaagatgttaggttgacattagactcagctattgatgatattctt 287  Q
    || || |  | | | ||||||||||||  ||||||||||| |||||||||| ||||| |||||| |||||    
T  19849373 gcataaggttcaggccttgaaaattgacaatgttaggttggcattagactcggctatggatgattttctt 19849442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 20036538 - 20036385
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||| || ||||||||| |||||| || ||   || |||| |||| |||||||||    
T  20036538 tataaggatttaactttgtttaagaaaacaattgttgatttgtcaaaatgtcatgttggtggtgatagacttcctttagaagttactcttgaatcaccct 20036439  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaac 171  Q
    |||||||||||||||||||||||| ||  |||||||||| ||||||| ||||||    
T  20036438 tttacttggttcaaatttgggtgtgggagaggttcaaaaatttacaaccacaac 20036385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 19818736 - 19818938
Alignment:
Q  17 ttataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccc 116  Q
    |||||| ||||||| |||||||||||||| |||||||| ||||||||||||| |||||||||| ||||||||| ||   ||  ||| |||||||||||||    
T  19818736 ttataaagatttaagtttgtttaagaaaaaaatagttgatttgtcaaaatattctgttggtggtgatagatttcctttagaacttactcttcaatcaccc 19818835  T
Q  117 ttttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggt 216  Q
    ||||| ||||||||||| ||||||| ||  |||||||||| | | ||| |||  | | |||||||| |||  ||||| ||||||||||||| ||||||||    
T  19818836 ttttatttggttcaaatatgggtgtgggagaggttcaaaaatatgcaaccactgccacaaaccatgttgataaaccatggagacccttttttgtttaggt 19818935  T
Q  217 ggc 219  Q
    |||    
T  19818936 ggc 19818938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 19956267 - 19956412
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    |||||||||||||||||||| ||||||| || ||||| |||||||||||||||||| ||||| ||||||| | ||   ||  ||| ||||||||||||||    
T  19956267 tataaggatttaactttgttaaagaaaaaaacagttgatttgtcaaaatatcctgtgggtggtgatagatatccttcagaacttactcttcaatcaccct 19956366  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttaca 163  Q
    |||||||||||||||||||||||| || ||||||||||| ||||||    
T  19956367 tttacttggttcaaatttgggtgtgggaaaggttcaaaaatttaca 19956412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 26653332 - 26653485
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    |||||||| || |||||||||||||||||||| ||||||||||||||||||  ||||||||| ||||||||| ||  ||| |||| ||| | ||||||||    
T  26653332 tataaggacttgactttgtttaagaaaacaattgttggtttgtcaaaatattatgttggtggtgatagatttcctttggaagttaatctacgatcaccct 26653431  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaac 171  Q
    |||||||||||||||||||||||| ||  ||||||| || ||| ||| ||||||    
T  26653432 tttacttggttcaaatttgggtgtgggagaggttcacaaatttgcaaccacaac 26653485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 24 - 139
Target Start/End: Original strand, 30914832 - 30914947
Alignment:
Q  24 gatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcacccttttact 123  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||  |||||||| ||||||| | ||| |||||||| |||||| ||||||||| |||    
T  30914832 gatttaagtttgtttaagaaaacaatagttggtttgtcaaaatatcaagttggtggtgatagatgtcctatggaggttactcttcactcaccctttgact 30914931  T
Q  124 tggttcaaatttgggt 139  Q
    |||| |||||||||||    
T  30914932 tggtacaaatttgggt 30914947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 20016136 - 20015873
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||| ||||||| |||||||||||||||||| |||| |||||||||||||| ||| ||||| ||||| | | ||   || ||||  ||||||||||||     
T  20016136 tataaagatttaagtttgtttaagaaaacaattgttgatttgtcaaaatatcatgtgggtggtgataggtatcctttagaagttacacttcaatcaccca 20016037  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtg 217  Q
    |||| ||||||||||||||||||| ||  |||||||||| ||||||| ||||||      ||||| ||| ||| || | ||||||||| | |||||||||    
T  20016036 tttatttggttcaaatttgggtgtgggagaggttcaaaattttacaaccacaac------ccatgttgatcaatcatgaagaccctttattgtttaggtg 20015943  T
Q  218 gcgtatgagtaaagacttgaaaattgaagatgttaggttgacattagactcagctattgatgatattctt 287  Q
    || || |  | | |  |||||||||||  |||||| | || ||||||||||||||||||||||| |||||    
T  20015942 gcataaggttcaggctttgaaaattgacaatgttatggtggcattagactcagctattgatgattttctt 20015873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 19838576 - 19838729
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||| |||||||||||||| ||||||| || ||||| |||||||||| ||||||||||| | |||| || | ||   || |||| ||||||||||||||    
T  19838576 tataatgatttaactttgttaaagaaaaaaacagttgatttgtcaaaacatcctgttggttgtgatacatatcctttagaagttactcttcaatcaccct 19838675  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaac 171  Q
    |||||||||||||||||||||||| ||  |||||||||| ||||||| ||||||    
T  19838676 tttacttggttcaaatttgggtgtgggagaggttcaaaaatttacaaccacaac 19838729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 171
Target Start/End: Original strand, 26647184 - 26647337
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||||||||||| |||||||||||||||| | |||| ||||  ||||  | ||| |||||| ||||||| | ||  ||| |||| ||||||||||||||    
T  26647184 tataaggatttaagtttgtttaagaaaacacttgttgatttgaaaaaaatttctgatggtggtgatagatatcctttggaagttactcttcaatcaccct 26647283  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaac 171  Q
    |||||||||||||||||||||||| || ||||||||||| ||||||| ||||||    
T  26647284 tttacttggttcaaatttgggtgtgggaaaggttcaaaaatttacaaccacaac 26647337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 19951304 - 19951499
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||||||||||||||||||||| ||| |||| |||| |||||||||||||| ||| ||||| ||||||| | ||   ||  ||| ||||||||||||||    
T  19951304 tataaggatttaactttgtttaaaaaagcaattgttgatttgtcaaaatatcatgtgggtggtgatagatatcctttagaacttactcttcaatcaccct 19951403  T
Q  118 tttacttggttcaaatttgggtgttggga-aggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggt 216  Q
    |||||||||||||||||||| | |||||| ||||| |||| ||||||| ||||||      |||||  ||  ||||| ||||||||||||| ||||||||    
T  19951404 tttacttggttcaaatttggat-ttgggagaggtttaaaaatttacaaccacaac------ccatgccgataaaccatggagacccttttttgtttaggt 19951496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 19989705 - 19989900
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||||||||||  |||  ||||||| | | |||||  ||||||||||  |||||||||||| |||||| || | | ||||| || ||||||||||||||    
T  19989705 tataaggatttaggtttacttaagaacatattagttaatttgtcaaaacttcctgttggtggtgatagacttcccatggaggctattcttcaatcaccct 19989804  T
Q  118 tttacttggttcaaatttgggtgttggga-aggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggt 216  Q
    |||||||||||||| ||||||| |||||| |||||||||| ||||||| ||||||      ||||| ||| |||| | | ||||||||||| ||||||||    
T  19989805 tttacttggttcaagtttgggt-ttgggagaggttcaaaaatttacaaccacaac------ccatgctgatcaactatgaagacccttttttgtttaggt 19989897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 19832133 - 19832197
Alignment:
Q  99 gttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaagtttaca 163  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||  |||||||||| ||||||    
T  19832133 gttactcttcaatcacccttttacttggttcaaatttgggtgtgggagaggttcaaaaatttaca 19832197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 17114900 - 17115091
Alignment:
Q  22 aggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccctttta 121  Q
    ||||||| ||||||||||||||||| ||  ||| |||||||||| ||||||||  ||| ||||||||| ||   || |||  || || |   ||||||||    
T  17114900 aggatttgactttgtttaagaaaactattattgatttgtcaaaaaatcctgtttatggtgatagatttcctttagaagttgctcgtcgaatgccctttta 17114999  T
Q  122 cttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggtggc 219  Q
    |||||||||||||||| ||| ||  |||||||||| ||||||| |||      || ||||| ||| |||||| ||||||||||| | |||||||||||    
T  17115000 cttggttcaaatttggatgtgggagaggttcaaaaatttacaaccac------aatccatgttgatcaaccatggagaccctttattgtttaggtggc 17115091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 20046303 - 20046426
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    ||||||||||||| ||| |||||||| |||||  ||| | ||| ||||||||| |||||||| ||||||||| ||   ||  ||| | ||| ||||||||    
T  20046303 tataaggatttaagtttatttaagaacacaattattgatctgttaaaatatccggttggtggtgatagatttcctgttgaatttactattctatcaccct 20046402  T
Q  118 tttacttggttcaaatttgggtgt 141  Q
    |||| ||||||||| |||||||||    
T  20046403 tttatttggttcaagtttgggtgt 20046426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 281
Target Start/End: Original strand, 19858343 - 19858509
Alignment:
Q  109 aatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttg 208  Q
    ||||||||||||||||| ||||| ||||||| | || ||||||||||| |||| |  ||||||      ||||| ||| ||| || ||||| ||||| |     
T  19858343 aatcacccttttacttgcttcaagtttgggtttgggaaaggttcaaaaatttagagccacaac------ccatgttgatcaagcatggagaacctttatt 19858436  T
Q  209 gtttaggtggcgtatgagtaaagacttgaaaattgaagatgttaggttgacattagactcagctattgatgat 281  Q
    ||||||||||| || |  ||| | ||||||| ||||  |||||| |||| |||||||||| ||||||||||||    
T  19858437 gtttaggtggcataaggttaaggccttgaaagttgacaatgttaagttggcattagactcggctattgatgat 19858509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 156
Target Start/End: Original strand, 19943987 - 19944035
Alignment:
Q  108 caatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 156  Q
    ||||||||||||||| |||||||| ||||||| | || |||||||||||    
T  19943987 caatcacccttttacctggttcaagtttgggtttgggaaaggttcaaaa 19944035  T

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Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 24839822 - 24839774
Alignment:
Q  108 caatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 156  Q
    ||||||||||||||| |||||||| ||||||| | || |||||||||||    
T  24839822 caatcacccttttacctggttcaagtttgggtttgggaaaggttcaaaa 24839774  T

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Target: chr5 (Bit Score: 72; Significance: 9e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 9815216 - 9815480
Alignment:
Q  17 ttataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccc 116  Q
    |||||| ||||||| ||||||||||||||||||||||  |||||||||||   |||||||||| ||||||| | ||   || |||| |||||||||||||    
T  9815216 ttataacgatttaagtttgtttaagaaaacaatagttaatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccc 9815315  T
Q  117 ttttacttggttcaaatttgggtgttgggaaggttcaaaagtttacaatcacaactaaaaaccatgatgaccaaccacggagaccctttttggtttaggt 216  Q
    ||||||||||||||||||||||||| ||  |||||| ||| ||||||  || |||      ||||| ||| ||| |||||||||||||| | ||||||||    
T  9815316 ttttacttggttcaaatttgggtgtgggagaggttccaaaatttacagccagaac------ccatgttgatcaatcacggagaccctttattgtttaggt 9815409  T
Q  217 ggcgtatgagtaaagacttgaaaattgaagatgttaggttgacattagactcagctattgatgatattctt 287  Q
    | | || |  | | | ||||||||||||  |||||| | || |||||||||| ||||| |||||| |||||    
T  9815410 gacataaggttcaggccttgaaaattgacaatgttaagctggcattagactcggctatggatgattttctt 9815480  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 26354862 - 26354724
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    |||||||||||||   ||||||||||||| || |||| |||||||||||   |||||||||| ||||||| | ||   || |||| |||||||||||| |    
T  26354862 tataaggatttaagcgtgtttaagaaaaccattgttgatttgtcaaaattatctgttggtggtgatagatatcctttagaagttactcttcaatcaccgt 26354763  T
Q  118 tttacttggttcaaatttgggtgttgggaaggttcaaaa 156  Q
    |||||||||||||||||||||||| ||  ||||||||||    
T  26354762 tttacttggttcaaatttgggtgtgggagaggttcaaaa 26354724  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 22651828 - 22651781
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaa 65  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  22651828 tataaggatttaactttgtttaagaaaacaattgttgatttgtcaaaa 22651781  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 22689530 - 22689473
Alignment:
Q  99 gttagtcttcaatcacccttttacttggttcaaatttgggtgttgggaaggttcaaaa 156  Q
    |||| ||| |||||||||||||||||||||||| ||||||||| ||  ||||||||||    
T  22689530 gttaatctgcaatcacccttttacttggttcaagtttgggtgtgggagaggttcaaaa 22689473  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 22685641 - 22685596
Alignment:
Q  20 taaggatttaactttgtttaagaaaacaatagttggtttgtcaaaa 65  Q
    ||||||||||| ||| |||||||||||||| |||| ||||||||||    
T  22685641 taaggatttaagtttttttaagaaaacaattgttgatttgtcaaaa 22685596  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 6397674 - 6397554
Alignment:
Q  18 tataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtggcgatagattttctaaggaggttagtcttcaatcaccct 117  Q
    |||||||||||| |||| ||||||||||||||  ||| |||||| ||||||| ||||||||  |||| ||||  |   ||  ||| ||||| |||||| |    
T  6397674 tataaggatttatctttatttaagaaaacaattattgatttgtcgaaatatcttgttggtgatgataaatttcatgttgaatttactcttctatcacctt 6397575  T
Q  118 tttacttggttcaaatttggg 138  Q
    |||||||||||||| ||||||    
T  6397574 tttacttggttcaagtttggg 6397554  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 12581573 - 12581632
Alignment:
Q  19 ataaggatttaactttgtttaagaaaacaatagttggtttgtcaaaatatcctgttggtg 78  Q
    |||||||||||||||| ||||||||||||||  ||| | |||||||||||| ||||||||    
T  12581573 ataaggatttaactttatttaagaaaacaattattgatctgtcaaaatatcttgttggtg 12581632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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