View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21550_high_14 (Length: 289)

Name: NF21550_high_14
Description: NF21550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21550_high_14
NF21550_high_14
[»] chr2 (4 HSPs)
chr2 (18-277)||(31330512-31330771)
chr2 (18-277)||(31337233-31337492)
chr2 (18-214)||(2694672-2694855)
chr2 (191-268)||(31316273-31316352)
[»] chr4 (1 HSPs)
chr4 (157-277)||(31662636-31662756)
[»] chr8 (3 HSPs)
chr8 (18-214)||(5559115-5559297)
chr8 (136-253)||(34149980-34150098)
chr8 (18-114)||(25637223-25637319)
[»] chr5 (2 HSPs)
chr5 (18-214)||(37367646-37367829)
chr5 (18-214)||(41529744-41529926)
[»] chr3 (2 HSPs)
chr3 (18-214)||(19357899-19358081)
chr3 (183-268)||(18112715-18112802)
[»] chr7 (2 HSPs)
chr7 (18-138)||(4342607-4342727)
chr7 (173-214)||(34455281-34455322)
[»] chr6 (1 HSPs)
chr6 (146-253)||(5248687-5248795)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 31330771 - 31330512
Alignment:
Q  18 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31330771 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaataacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 31330672  T
Q  118 actttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctctt 217  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31330671 acttttacctcaatttaagctattaatcacttatacttacattcagtttcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctctt 31330572  T
Q  218 ggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttca 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31330571 ggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttca 31330512  T

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Target: chr2; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 277
Target Start/End: Complemental strand, 31337492 - 31337233
Alignment:
Q  18 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31337492 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaataacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 31337393  T
Q  118 actttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctctt 217  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31337392 acttttacctcaatttaagctattaatcacttatacttacattcagtttcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctctt 31337293  T
Q  218 ggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttca 277  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31337292 ggtgtcttgccttaatcttgctcaagcttgcctctagctcaaaatacaacacaaacttca 31337233  T

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Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 2694855 - 2694672
Alignment:
Q  18 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 117  Q
    |||||||||||||||||||||| ||| |||||| |||||   | | ||| ||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  2694855 actaacagcccaaaaacagagttatcgcagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatttcttctcaaaataatc 2694756  T
Q  118 actttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagct 214  Q
    ||||| ||||||||||||||||||||||||||||||||||||             |||||||||||||| |||||||||||||||||||||||||||    
T  2694755 acttttacctcaatttaagctattaatcacttatacttacat-------------tcagcccctgcctcaatcttcttgccaagccaaaccctagct 2694672  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 191 - 268
Target Start/End: Original strand, 31316273 - 31316352
Alignment:
Q  191 ttcttgccaagccaaa-ccctagctcttggtgtcttgccttaatcttgctcaagcttgcctcta--gctcaaaatacaaca 268  Q
    |||||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||  |||||||| ||||||    
T  31316273 ttcttgccaagccaaaaccctagctcttg-tgtcttgcattaatcttgctcaaacttgcctctaatgctcaaaacacaaca 31316352  T

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Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 157 - 277
Target Start/End: Complemental strand, 31662756 - 31662636
Alignment:
Q  157 cattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagct 256  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31662756 cattcagtttcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaagcttgcctctagct 31662657  T
Q  257 caaaatacaacacaaacttca 277  Q
    |||||||||||||||||||||    
T  31662656 caaaatacaacacaaacttca 31662636  T

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Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 5559115 - 5559297
Alignment:
Q  18 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 117  Q
    ||||||||||||||||||||||||| | ||||| |||||   | | ||| ||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  5559115 actaacagcccaaaaacagagtcat-atagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatttcttctcaaaataatc 5559213  T
Q  118 actttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagct 214  Q
    ||||| ||||||||||||||||||||||||||||||||             |||||||||||||||||| |||||||||||||||||||||||||||    
T  5559214 acttttacctcaatttaagctattaatcacttatactt-------------acattcagcccctgcctcaatcttcttgccaagccaaaccctagct 5559297  T

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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 253
Target Start/End: Complemental strand, 34150098 - 34149980
Alignment:
Q  136 gctattaatcacttatacttaca-ttcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatc 234  Q
    |||||| |||||||||||||||| |||| || ||| | ||| ||| || ||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  34150098 gctatttatcacttatacttacacttcaatttcaatactcatcccttgactcaatcttcttgccaagccaaaccctagctcttggtgtcttgcctcaatc 34149999  T
Q  235 ttgctcaagcttgcctcta 253  Q
    |||||||||||||||||||    
T  34149998 ttgctcaagcttgcctcta 34149980  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 25637319 - 25637223
Alignment:
Q  18 actaacagcccaaaa-acagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaata 114  Q
    ||||| ||||||||| ||||||| ||| |||||| ||||| | ||| ||||||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  25637319 actaagagcccaaaatacagagttatctcagaat-ccaaaggcaataacagcttatgcttataattaatcaacataacttaaatttcttctcaaaata 25637223  T

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Target: chr5 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 37367829 - 37367646
Alignment:
Q  18 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 117  Q
    |||||||||||||||||||| |||||| ||||| |||||   | | ||| ||||||| |||||| |||||||||||||| |||| |||||||||||||||    
T  37367829 actaacagcccaaaaacagattcatcatagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaattgcttctcaaaataatc 37367730  T
Q  118 actttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagct 214  Q
    ||||| ||||||||||||||||||||||||||||||||||||             |||||||||||||| |||||||||||||||||||||||||||    
T  37367729 acttttacctcaatttaagctattaatcacttatacttacat-------------tcagcccctgcctcaatcttcttgccaagccaaaccctagct 37367646  T

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Target: chr5; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 41529744 - 41529926
Alignment:
Q  18 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 117  Q
    ||||||||||||||||||||||||| | ||||| |||||   | | ||| ||||||| |||||| |||||||||||||| ||||||||| ||||||||||    
T  41529744 actaacagcccaaaaacagagtcat-atagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatttcttcccaaaataatc 41529842  T
Q  118 actttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagct 214  Q
    ||||| ||||||||||||||||||||||||||||||||             |||||||||||||||||| |||||||||||||||||||||||||||    
T  41529843 acttttacctcaatttaagctattaatcacttatactt-------------acattcagcccctgcctcaatcttcttgccaagccaaaccctagct 41529926  T

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Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 19358081 - 19357899
Alignment:
Q  18 actaacagcccaaaaacagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataatc 117  Q
    ||||||||||||||||||||||||| | ||||| |||||   | | ||| ||||||| |||||| |||||||||||||| ||||||||||||||||||||    
T  19358081 actaacagcccaaaaacagagtcat-atagaatcccaaagtcagtaacaacttatacatctaatcaatcaacataacttgaatttcttctcaaaataatc 19357983  T
Q  118 actttcacctcaatttaagctattaatcacttatacttacattcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagct 214  Q
    ||||| ||||||||||||||||||||||||||||||||||||             |||||||||||||| |||||||||||||||||||||||||||    
T  19357982 acttttacctcaatttaagctattaatcacttatacttacat-------------tcagcccctgcctcaatcttcttgccaagccaaaccctagct 19357899  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 18112715 - 18112802
Alignment:
Q  183 cctctatcttcttgccaagccaaa-ccctagctcttggtgtcttgccttaatcttgctcaagcttgcctcta--gctcaaaatacaaca 268  Q
    |||| ||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| ||||||||||  |||||||| ||||||    
T  18112715 cctcaatcttcttgccaagccaaaaccctagctcttg-tgtcttgcattaatcttgctcaaacttgcctctaatgctcaaaacacaaca 18112802  T

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Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 4342607 - 4342727
Alignment:
Q  18 actaacagcccaaaa-acagagtcatcacagaatgccaaatgaaattacagcttatacttctaatgaatcaacataacttaaatttcttctcaaaataat 116  Q
    ||||||||||||||| ||||||| ||| |||||| ||||| | ||| ||||||||| ||| |||| |||||||||||||||||||||||||||||||||     
T  4342607 actaacagcccaaaatacagagttatctcagaat-ccaaaggcaataacagcttatgcttataattaatcaacataacttaaatttcttctcaaaataag 4342705  T
Q  117 cactttcacctcaatttaagct 138  Q
    |||||| |||||||||| ||||    
T  4342706 cacttttacctcaattttagct 4342727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 34455322 - 34455281
Alignment:
Q  173 tcagcccctgcctctatcttcttgccaagccaaaccctagct 214  Q
    ||||||| ||| || |||||||||||||||||||||||||||    
T  34455322 tcagcccttgcttcaatcttcttgccaagccaaaccctagct 34455281  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 5248795 - 5248687
Alignment:
Q  146 acttatacttaca-ttcagttgcaacattcagcccctgcctctatcttcttgccaagccaaaccctagctcttggtgtcttgccttaatcttgctcaagc 244  Q
    ||||||||||||| |||| || ||| | ||||||| || ||| || || |||||||||||||||||| |||||||||||||| || ||||||||| ||||    
T  5248795 acttatacttacacttcaatttcaatactcagcccttgtctcgattttattgccaagccaaaccctatctcttggtgtcttgactcaatcttgctaaagc 5248696  T
Q  245 ttgcctcta 253  Q
    |||||||||    
T  5248695 ttgcctcta 5248687  T

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